NO05G05280, NO05G05280 (gene) Nannochloropsis oceanica

Overview
NameNO05G05280
Unique NameNO05G05280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr5:1403254..1404447 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1403254..1404447 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G05280 vs. NCBI_GenBank
Match: EWM27875.1 (hypothetical protein Naga_100094g4 [Nannochloropsis gaditana])

HSP 1 Score: 271.6 bits (693), Expect = 4.000e-69
Identity = 187/455 (41.10%), Postives = 242/455 (53.19%), Query Frame = 0 
Query:    1 MPRPRQRPHPCDRV-----LLMSSLLLLAFLRALSQAWTPSHTVSTTRSGAVLNHLAKATTLFGGLLLPRLPVISLDVTQDPSPT--------AVFLLGGYRIPADQYTSYQRRLLADIPSLAPDSVTLLPDRQGEAGEVDDILRRLNK----EKPKKVMLIGHSRGASVAVRVAARLPSFSPRLDLCGLLLLDPVDEQEKI----------------TGSSN-------EWTKSSRNISTP-------SSCLPLLRSLPPSLPIVIVALPFSGVNSYYKSPIRNVCAPPGRDARAFYXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTRANPDEEATA-SHPFPSS---------FSFPLLLTLPFAGHLQLLDARPSLPFAELCGVGKVNTDREVQVFVAAVVVACCEWWVGGKGGKG------EGLRERIRRRVEEGGLSGSMRGSVVWEGGG 393
            M RPR R    DR      L M  ++L  +    + AW        TR  AV N     +T F GLLLP    + + +  D S T        A+ +LGGYRIPA+QY++YQR LL  IPSL  ++V +  DR G+ GE++ I+R+L+       P+K++L+ HSRGA+VAVRVAARL S     ++ GLLL+DPVDEQE                  +G SN          +SS   + P       SSCLPLLR LPP LP+VIV+LPF+G+NSYY+SP RN+CAPP RDARAF+                            G  A      TA S PFP+S          S+PLLLTLPFAGHLQLLD R +LPFAE+CGV K   D+EVQ  ++AV+VACCE W+   GG+       E LR+ +       G+   +  S+ W G G
Sbjct:    1 MRRPRSRRK--DRFHRILGLSMFPVVLFYYPSTSTCAWRIPAASLLTRGKAVTNLFTACSTSF-GLLLPHSLPLDIKIAPDVSSTNEAVDISSAISVLGGYRIPANQYSTYQRDLLTLIPSLRKENVKIFADRAGDDGEIEAIVRQLSNVTPAHSPRKIILVAHSRGAAVAVRVAARLASSPLTHEVRGLLLIDPVDEQETYDAGGSTARLNDMVPSNSGDSNTLQPFISSTLRSSCQSAFPSSFHGPTSSCLPLLRCLPPRLPVVIVSLPFTGLNSYYRSPNRNICAPPERDARAFFKASSYAAAAAVDDHTASTAGSRGAGSDVGRLAIVRTSPTAGSDPFPASSGQSPSSSVISYPLLLTLPFAGHLQLLDDRLALPFAEVCGVSKSIPDKEVQAVISAVIVACCEHWLKEGGGQDKEPTRVEALRQVMDLSARTRGVRQELWNSITWGGEG 452
The following BLAST results are available for this feature:
BLAST of NO05G05280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27875.14.000e-6941.10hypothetical protein Naga_100094g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003314NSK003314Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05280.1NO05G05280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100094g4gene2692Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05280.1NO05G05280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05280 ID=NO05G05280|Name=NO05G05280|organism=Nannochloropsis oceanica|type=gene|length=1194bp
ATGCCACGGCCGCGACAAAGACCACATCCCTGCGACCGTGTTCTCCTTAT
GTCCTCGCTTCTCCTCCTTGCCTTTCTTCGGGCCCTTTCCCAGGCATGGA
CGCCGTCCCATACTGTTTCCACGACACGCTCCGGCGCCGTGCTCAACCAT
CTCGCGAAAGCTACCACCCTCTTTGGCGGCCTCCTGCTTCCCCGTTTGCC
AGTCATCTCTCTGGATGTAACGCAAGACCCATCTCCCACCGCTGTCTTTC
TTCTTGGAGGCTATCGCATACCAGCAGACCAATACACCTCCTACCAACGT
CGCCTCCTCGCCGATATCCCCTCCCTTGCCCCAGACAGCGTCACACTCCT
CCCAGACCGTCAAGGCGAAGCCGGTGAAGTTGATGATATTTTGCGTCGAT
TAAATAAAGAGAAACCGAAAAAAGTCATGCTAATTGGCCATTCGCGCGGG
GCTTCGGTTGCCGTTCGTGTCGCTGCCCGCCTCCCTTCCTTCTCCCCGCG
ATTGGACCTCTGCGGACTTCTCCTTCTCGACCCGGTTGACGAGCAAGAAA
AAATCACTGGCTCCTCTAATGAGTGGACCAAAAGTAGTCGCAACATTAGC
ACGCCTTCGTCCTGCCTCCCCCTCCTTCGCTCCCTCCCTCCCTCTCTCCC
CATCGTTATTGTGGCCTTGCCTTTCAGTGGCGTCAACTCCTACTACAAAA
GTCCCATTCGTAATGTCTGCGCCCCGCCTGGACGAGATGCGCGAGCATTT
TACATTGCTGCAGCAGCTGCTGCTGCTGCAAATGGCCATGGTGGTTTATC
AGGTGCTGCTGCTACAACTACTCCTGCAGGTAGTGCAGGCACCAGAGCAA
ATCCTGATGAGGAAGCTACTGCTTCTCACCCTTTCCCCTCCTCTTTCTCC
TTCCCCCTCCTTCTCACCCTCCCCTTTGCCGGCCACCTTCAACTACTCGA
CGCCCGCCCCTCCCTACCTTTTGCTGAGTTGTGCGGCGTGGGTAAGGTAA
ACACAGACCGGGAGGTACAAGTCTTTGTAGCTGCCGTGGTCGTGGCGTGC
TGTGAGTGGTGGGTGGGGGGGAAGGGGGGAAAGGGGGAGGGATTGAGGGA
GAGGATTCGGAGGAGGGTCGAGGAAGGAGGGCTTAGTGGGAGTATGCGAG
GTTCAGTGGTGTGGGAGGGAGGAGGAGCGGAGGACATGATGTAA
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protein sequence of NO05G05280.1

>NO05G05280.1-protein ID=NO05G05280.1-protein|Name=NO05G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MPRPRQRPHPCDRVLLMSSLLLLAFLRALSQAWTPSHTVSTTRSGAVLNH
LAKATTLFGGLLLPRLPVISLDVTQDPSPTAVFLLGGYRIPADQYTSYQR
RLLADIPSLAPDSVTLLPDRQGEAGEVDDILRRLNKEKPKKVMLIGHSRG
ASVAVRVAARLPSFSPRLDLCGLLLLDPVDEQEKITGSSNEWTKSSRNIS
TPSSCLPLLRSLPPSLPIVIVALPFSGVNSYYKSPIRNVCAPPGRDARAF
YIAAAAAAAANGHGGLSGAAATTTPAGSAGTRANPDEEATASHPFPSSFS
FPLLLTLPFAGHLQLLDARPSLPFAELCGVGKVNTDREVQVFVAAVVVAC
CEWWVGGKGGKGEGLRERIRRRVEEGGLSGSMRGSVVWEGGGAEDMM*
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Synonyms
Publications