NO05G05280.1, NO05G05280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05280.1
Unique NameNO05G05280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr5:1403254..1404447 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1403254..1404447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05280.1 vs.
Match: EWM27875.1 (hypothetical protein Naga_100094g4 [Nannochloropsis gaditana])

HSP 1 Score: 251.5 bits (641), Expect = 4.300e-63
Identity = 186/455 (40.88%), Postives = 245/455 (53.85%), Query Frame = 0 
Query:    1 MPRPRQRPHPCDRV-----LLMSSLLLLAFLRALSQAWTPSHTVSTTRSGAVLNHLAKATTLFGGLLLPRLPVISLDVTQDPSPT--------AVFLLGGYRIPADQYTSYQRRLLADIPSLAPDSVTLLPDRQGEAGEVDDILRRLNK----EKPKKVMLIGHSRGASVAVRVAARLPSFSPRLDLCGLLLLDPVDEQEKI----------------TGSSN-------EWTKSSRNISTPSSCLPLLRSLPPS-------LPIVIVALPFSGVNSYYKSPIRNVCAPPGRDARAFYIAAAAAAAANGHGGLSGAAATTTPAGSAGTRANPDEEATA-SHPFPSS---------FSFPLLLTLPFAGHLQLLDARPSLPFAELCGVGKVNTDREVQVFVAAVVVACCEWWVGGKGGKG------EGLRERIRRRVEEGGLSGSMRGSVVWEGGG 393
            M RPR R    DR      L M  ++L  +    + AW        TR  AV N     +T FG LLLP    + + +  D S T        A+ +LGGYRIPA+QY++YQR LL  IPSL  ++V +  DR G+ GE++ I+R+L+       P+K++L+ HSRGA+VAVRVAARL S     ++ GLLL+DPVDEQE                  +G SN          +SS   + PSS      S  P        LP+VIV+LPF+G+NSYY+SP RN+CAPP RDARAF+ A++ AAAA      +  A +       G  A      TA S PFP+S          S+PLLLTLPFAGHLQLLD R +LPFAE+CGV K   D+EVQ  ++AV+VACCE W+   GG+       E LR+ +       G+   +  S+ W G G
Sbjct:    1 MRRPRSRRK--DRFHRILGLSMFPVVLFYYPSTSTCAWRIPAASLLTRGKAVTNLFTACSTSFG-LLLPHSLPLDIKIAPDVSSTNEAVDISSAISVLGGYRIPANQYSTYQRDLLTLIPSLRKENVKIFADRAGDDGEIEAIVRQLSNVTPAHSPRKIILVAHSRGAAVAVRVAARLASSPLTHEVRGLLLIDPVDEQETYDAGGSTARLNDMVPSNSGDSNTLQPFISSTLRSSCQSAFPSSFHGPTSSCLPLLRCLPPRLPVVIVSLPFTGLNSYYRSPNRNICAPPERDARAFFKASSYAAAAAVDDHTASTAGSRGAGSDVGRLAIVRTSPTAGSDPFPASSGQSPSSSVISYPLLLTLPFAGHLQLLDDRLALPFAEVCGVSKSIPDKEVQAVISAVIVACCEHWLKEGGGQDKEPTRVEALRQVMDLSARTRGVRQELWNSITWGGEG 452
The following BLAST results are available for this feature:
BLAST of NO05G05280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27875.14.300e-6340.88hypothetical protein Naga_100094g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05280NO05G05280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05280.1NO05G05280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05280.1.cds1NO05G05280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05280.1 ID=NO05G05280.1|Name=NO05G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ATGCCACGGCCGCGACAAAGACCACATCCCTGCGACCGTGTTCTCCTTAT
GTCCTCGCTTCTCCTCCTTGCCTTTCTTCGGGCCCTTTCCCAGGCATGGA
CGCCGTCCCATACTGTTTCCACGACACGCTCCGGCGCCGTGCTCAACCAT
CTCGCGAAAGCTACCACCCTCTTTGGCGGCCTCCTGCTTCCCCGTTTGCC
AGTCATCTCTCTGGATGTAACGCAAGACCCATCTCCCACCGCTGTCTTTC
TTCTTGGAGGCTATCGCATACCAGCAGACCAATACACCTCCTACCAACGT
CGCCTCCTCGCCGATATCCCCTCCCTTGCCCCAGACAGCGTCACACTCCT
CCCAGACCGTCAAGGCGAAGCCGGTGAAGTTGATGATATTTTGCGTCGAT
TAAATAAAGAGAAACCGAAAAAAGTCATGCTAATTGGCCATTCGCGCGGG
GCTTCGGTTGCCGTTCGTGTCGCTGCCCGCCTCCCTTCCTTCTCCCCGCG
ATTGGACCTCTGCGGACTTCTCCTTCTCGACCCGGTTGACGAGCAAGAAA
AAATCACTGGCTCCTCTAATGAGTGGACCAAAAGTAGTCGCAACATTAGC
ACGCCTTCGTCCTGCCTCCCCCTCCTTCGCTCCCTCCCTCCCTCTCTCCC
CATCGTTATTGTGGCCTTGCCTTTCAGTGGCGTCAACTCCTACTACAAAA
GTCCCATTCGTAATGTCTGCGCCCCGCCTGGACGAGATGCGCGAGCATTT
TACATTGCTGCAGCAGCTGCTGCTGCTGCAAATGGCCATGGTGGTTTATC
AGGTGCTGCTGCTACAACTACTCCTGCAGGTAGTGCAGGCACCAGAGCAA
ATCCTGATGAGGAAGCTACTGCTTCTCACCCTTTCCCCTCCTCTTTCTCC
TTCCCCCTCCTTCTCACCCTCCCCTTTGCCGGCCACCTTCAACTACTCGA
CGCCCGCCCCTCCCTACCTTTTGCTGAGTTGTGCGGCGTGGGTAAGGTAA
ACACAGACCGGGAGGTACAAGTCTTTGTAGCTGCCGTGGTCGTGGCGTGC
TGTGAGTGGTGGGTGGGGGGGAAGGGGGGAAAGGGGGAGGGATTGAGGGA
GAGGATTCGGAGGAGGGTCGAGGAAGGAGGGCTTAGTGGGAGTATGCGAG
GTTCAGTGGTGTGGGAGGGAGGAGGAGCGGAGGACATGATGTAA
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protein sequence of NO05G05280.1

>NO05G05280.1-protein ID=NO05G05280.1-protein|Name=NO05G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MPRPRQRPHPCDRVLLMSSLLLLAFLRALSQAWTPSHTVSTTRSGAVLNH
LAKATTLFGGLLLPRLPVISLDVTQDPSPTAVFLLGGYRIPADQYTSYQR
RLLADIPSLAPDSVTLLPDRQGEAGEVDDILRRLNKEKPKKVMLIGHSRG
ASVAVRVAARLPSFSPRLDLCGLLLLDPVDEQEKITGSSNEWTKSSRNIS
TPSSCLPLLRSLPPSLPIVIVALPFSGVNSYYKSPIRNVCAPPGRDARAF
YIAAAAAAAANGHGGLSGAAATTTPAGSAGTRANPDEEATASHPFPSSFS
FPLLLTLPFAGHLQLLDARPSLPFAELCGVGKVNTDREVQVFVAAVVVAC
CEWWVGGKGGKGEGLRERIRRRVEEGGLSGSMRGSVVWEGGGAEDMM*
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mRNA from alignment at chr5:1403254..1404447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05280.1 ID=NO05G05280.1|Name=NO05G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp|location=Sequence derived from alignment at chr5:1403254..1404447- (Nannochloropsis oceanica)
ATGCCACGGCCGCGACAAAGACCACATCCCTGCGACCGTGTTCTCCTTAT
GTCCTCGCTTCTCCTCCTTGCCTTTCTTCGGGCCCTTTCCCAGGCATGGA
CGCCGTCCCATACTGTTTCCACGACACGCTCCGGCGCCGTGCTCAACCAT
CTCGCGAAAGCTACCACCCTCTTTGGCGGCCTCCTGCTTCCCCGTTTGCC
AGTCATCTCTCTGGATGTAACGCAAGACCCATCTCCCACCGCTGTCTTTC
TTCTTGGAGGCTATCGCATACCAGCAGACCAATACACCTCCTACCAACGT
CGCCTCCTCGCCGATATCCCCTCCCTTGCCCCAGACAGCGTCACACTCCT
CCCAGACCGTCAAGGCGAAGCCGGTGAAGTTGATGATATTTTGCGTCGAT
TAAATAAAGAGAAACCGAAAAAAGTCATGCTAATTGGCCATTCGCGCGGG
GCTTCGGTTGCCGTTCGTGTCGCTGCCCGCCTCCCTTCCTTCTCCCCGCG
ATTGGACCTCTGCGGACTTCTCCTTCTCGACCCGGTTGACGAGCAAGAAA
AAATCACTGGCTCCTCTAATGAGTGGACCAAAAGTAGTCGCAACATTAGC
ACGCCTTCGTCCTGCCTCCCCCTCCTTCGCTCCCTCCCTCCCTCTCTCCC
CATCGTTATTGTGGCCTTGCCTTTCAGTGGCGTCAACTCCTACTACAAAA
GTCCCATTCGTAATGTCTGCGCCCCGCCTGGACGAGATGCGCGAGCATTT
TACATTGCTGCAGCAGCTGCTGCTGCTGCAAATGGCCATGGTGGTTTATC
AGGTGCTGCTGCTACAACTACTCCTGCAGGTAGTGCAGGCACCAGAGCAA
ATCCTGATGAGGAAGCTACTGCTTCTCACCCTTTCCCCTCCTCTTTCTCC
TTCCCCCTCCTTCTCACCCTCCCCTTTGCCGGCCACCTTCAACTACTCGA
CGCCCGCCCCTCCCTACCTTTTGCTGAGTTGTGCGGCGTGGGTAAGGTAA
ACACAGACCGGGAGGTACAAGTCTTTGTAGCTGCCGTGGTCGTGGCGTGC
TGTGAGTGGTGGGTGGGGGGGAAGGGGGGAAAGGGGGAGGGATTGAGGGA
GAGGATTCGGAGGAGGGTCGAGGAAGGAGGGCTTAGTGGGAGTATGCGAG
GTTCAGTGGTGTGGGAGGGAGGAGGAGCGGAGGACATGATGTAA
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Coding sequence (CDS) from alignment at chr5:1403254..1404447-

>NO05G05280.1 ID=NO05G05280.1|Name=NO05G05280.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr5:1403254..1404447- (Nannochloropsis oceanica)
ATGCCACGGCCGCGACAAAGACCACATCCCTGCGACCGTGTTCTCCTTAT
GTCCTCGCTTCTCCTCCTTGCCTTTCTTCGGGCCCTTTCCCAGGCATGGA
CGCCGTCCCATACTGTTTCCACGACACGCTCCGGCGCCGTGCTCAACCAT
CTCGCGAAAGCTACCACCCTCTTTGGCGGCCTCCTGCTTCCCCGTTTGCC
AGTCATCTCTCTGGATGTAACGCAAGACCCATCTCCCACCGCTGTCTTTC
TTCTTGGAGGCTATCGCATACCAGCAGACCAATACACCTCCTACCAACGT
CGCCTCCTCGCCGATATCCCCTCCCTTGCCCCAGACAGCGTCACACTCCT
CCCAGACCGTCAAGGCGAAGCCGGTGAAGTTGATGATATTTTGCGTCGAT
TAAATAAAGAGAAACCGAAAAAAGTCATGCTAATTGGCCATTCGCGCGGG
GCTTCGGTTGCCGTTCGTGTCGCTGCCCGCCTCCCTTCCTTCTCCCCGCG
ATTGGACCTCTGCGGACTTCTCCTTCTCGACCCGGTTGACGAGCAAGAAA
AAATCACTGGCTCCTCTAATGAGTGGACCAAAAGTAGTCGCAACATTAGC
ACGCCTTCGTCCTGCCTCCCCCTCCTTCGCTCCCTCCCTCCCTCTCTCCC
CATCGTTATTGTGGCCTTGCCTTTCAGTGGCGTCAACTCCTACTACAAAA
GTCCCATTCGTAATGTCTGCGCCCCGCCTGGACGAGATGCGCGAGCATTT
TACATTGCTGCAGCAGCTGCTGCTGCTGCAAATGGCCATGGTGGTTTATC
AGGTGCTGCTGCTACAACTACTCCTGCAGGTAGTGCAGGCACCAGAGCAA
ATCCTGATGAGGAAGCTACTGCTTCTCACCCTTTCCCCTCCTCTTTCTCC
TTCCCCCTCCTTCTCACCCTCCCCTTTGCCGGCCACCTTCAACTACTCGA
CGCCCGCCCCTCCCTACCTTTTGCTGAGTTGTGCGGCGTGGGTAAGGTAA
ACACAGACCGGGAGGTACAAGTCTTTGTAGCTGCCGTGGTCGTGGCGTGC
TGTGAGTGGTGGGTGGGGGGGAAGGGGGGAAAGGGGGAGGGATTGAGGGA
GAGGATTCGGAGGAGGGTCGAGGAAGGAGGGCTTAGTGGGAGTATGCGAG
GTTCAGTGGTGTGGGAGGGAGGAGGAGCGGAGGACATGATGTAA
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Synonyms
Publications