NO05G05260, NO05G05260 (gene) Nannochloropsis oceanica

Overview
NameNO05G05260
Unique NameNO05G05260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2420
Alignment locationchr5:1398237..1400656 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1398237..1400656 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G05260 vs. NCBI_GenBank
Match: XP_005856141.1 (hypothetical protein NGA_0248000 [Nannochloropsis gaditana CCMP526] >EKU20209.1 hypothetical protein NGA_0248000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 143.3 bits (360), Expect = 5.200e-31
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 0 
Query:    1 MRFLSLIVSAVAVLGAVADPEPLRGQGRALYVSTFGGIAYNNNYPINACMYFDRYPKAVFSDCDGHSAADAYCHNQGYARAIDYTLTSFRTLKTPSSFIMGSQKIVEAALMDDASSVLTDVQCDQ 126
            MR  SLI SA  +L A A  E LRG  R+LYV+T+GG A+  NYPI+AC +F+RYP+A F DCDG +AAD +CH +GYAR++ + LT+FR LK  SS ++GS K+VEAAL +    V+T+VQC Q
Sbjct:    1 MRTFSLITSATVLLCASAATENLRGSERSLYVATYGGNAFMGNYPIDACFHFERYPEAKFWDCDGKAAADFFCHKEGYARSVGFDLTNFRGLKLASSLVVGSDKVVEAALHEPEQKVITNVQCAQ 125
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BLAST of NO05G05260 vs. NCBI_GenBank
Match: EWM27869.1 (hypothetical protein Naga_100094g6 [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 5.200e-31
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 0 
Query:    1 MRFLSLIVSAVAVLGAVADPEPLRGQGRALYVSTFGGIAYNNNYPINACMYFDRYPKAVFSDCDGHSAADAYCHNQGYARAIDYTLTSFRTLKTPSSFIMGSQKIVEAALMDDASSVLTDVQCDQ 126
            MR  SLI SA  +L A A  E LRG  R+LYV+T+GG A+  NYPI+AC +F+RYP+A F DCDG +AAD +CH +GYAR++ + LT+FR LK  SS ++GS K+VEAAL +    V+T+VQC Q
Sbjct:   14 MRTFSLITSATVLLCASAATENLRGSERSLYVATYGGNAFMGNYPIDACFHFERYPEAKFWDCDGKAAADFFCHKEGYARSVGFDLTNFRGLKLASSLVVGSDKVVEAALHEPEQKVITNVQCAQ 138
The following BLAST results are available for this feature:
BLAST of NO05G05260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005856141.15.200e-3155.20hypothetical protein NGA_0248000 [Nannochloropsis ... [more]
EWM27869.15.200e-3155.20hypothetical protein Naga_100094g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003316NSK003316Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05260.1NO05G05260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611387gene_10577Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100094g6gene2690Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05260.1NO05G05260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05260 ID=NO05G05260|Name=NO05G05260|organism=Nannochloropsis oceanica|type=gene|length=2420bp
CCTCCTCACACAGAATTTTTCGTTCGCTATTGATTTTCTCTGATTCCTTA
TTGACTGTATTATCTATCATCCCTATGTCTTTACTATCTACCATTGGCAA
GGGGCTTTTTTGATGCCTCCTGCCCAATCATTGGCCATCTTCCTTGCCCC
TCCTGCTCTCCTTGTCCGCCAAGACCGCTTATCCACTGTACTGAGGCCTT
CGCACGCGGAGAGAAAGTTCAGAGAGTTTTAATTTCCCTGCCATTTTCTG
CTGAAGTGTAGCTGCAAGGAAGCAATATGCAAAGACCCCACTTTCCCCCC
CTATACTCTATACAACCAGCCACGGGGTGGGACACGACATGGCACCTCTG
GAACAGTGACCACTCCCTTACCACGCGGCTGCATCGACATTCCTGACGCA
AGGCCTTTGTCCCCTTTGTACAAGCCACTTCCCCCCCAAAAAATATGCCC
ACTTACCATCGGACCCCCGCCCCAGCGGCGACAACATGCCCACTCTCCCA
TGACACCTTACATTCTTCTCCCTTTTCTCCCCCCTCCCCCTTAATTCACA
CATGTACGCCGCCGCCTCTCCCGTCTTTTTCCGTGCTGTTCTTCTGATCA
TCTCAAAACGTCCCCCCGTAGCCTTCCAACGTCACTACCACCCAGCACCT
TAACTATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTCGGT
GCTGTGGCTGATCCCGAGgtacgtattatattcagtgcttgggtgccttc
actgtgggcttttccgacatcgaaaaatctcatttccctcagtaagcttt
tttttccttgaaggaatttcctccccaaggcagctactctcaatttaccc
ctccactcccgtattaaatcctcatgccagaaggtgcaggctcaacagtt
tgggtttgtgtacacacatgtttggtatcttctgcctccctctttctgca
actgctctattacttctccattcacatcctccctttctctcccttccttt
ctccctccctccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctccctccctccctccctcccccccttcctccctcc
ctccctcccacacagCCCCTGCGCGGTCAGGGGCGTGCACTGTACGTGTC
GACCTTCGGTGGCATCGCCTACAACAATAACTATCCCATCAACGCCTGTA
TGTACTTCGACCGGTACCCCAAGGCCGTATTCAGgtaattccagagggag
ggcgggagggagggcgtgagggagggaggccagtgccagacgtaccgcct
aggtcctcattcttcggtggtgtgcatccccggctccctaaaaggcatta
ccggccactgactcaccaccaagcccttccctccctcccttcctccctcc
attccacgtagCGACTGCGACGGACACTCCGCCGCAGATGCTTACTGCCA
CAACCAGGGCTATGCTCGTGCAATCGACTACACGCTCACCTCCTTCAGGA
CACTCAAGACACCCTgtacgtcctcccttctcccttctccctctcctcct
tcaccccctccctccctccctcctcatccacccacggtccctttccctcc
atcccttcttccctccttccctccttccctcggctctgaaccccccttag
CCTCCTTCATCATGGGCAGCCAAAAAATCGTTGAGGCCGCTCTCATGGAT
GACGCCAGCTCGGTCCTGACGGACGTCCAATGCGATCAGGCCTAAGCCAC
TCTCTTCTCGCTACTTGACCCTACCCTCTTTCTCTCGGTGTTGAAGGAGG
GAAGGAAGCAGGAGGAGGGAGGGGGCGCGGTAGGGACAGCAATAGCAGCA
GCAGCAGCAGAATATTTTGTGAAGTCAAATTTTTGGGGGCGGACAGAAGG
AAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGCTTAATGC
GCGTCTACTATTTCCTTTTCTCCCCCTCCTCTTCCCATTGCTTGTGGCCC
CCGTGCATGTGTGATTGAATATATATATATATGTGTGTGTACCGTCGTTG
CCTTGGAGGAACAAGCTTGCTAGAGAAAAAGGGATGAGAAGAAAGCATCA
GCGGCAGTTGAAAGAGGAGGAGAAGGATCTGCAGCAACCATGGCAGCAGT
GATGCCGTAACGAGGAGGGAGGGAGATCGGAAGACGGAGGGTGCAGGCAT
TGCGAGGGTATGTACGTGGTACGTGAGAAAGAATGAATGGACTTCTCCTC
AACGATTGAAGAGTGAGGGAGGTGGGGGAGGGCTACCCCTCCCTCCTCCT
GTAGAAATCTAAATCTTAGTGTAATGTGTATGCGTTGAGGCAAGATAGCG
GGAGAGTGCGTTTGGAAATGGTCTATAACTGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAG
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protein sequence of NO05G05260.1

>NO05G05260.1-protein ID=NO05G05260.1-protein|Name=NO05G05260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MRFLSLIVSAVAVLGAVADPEPLRGQGRALYVSTFGGIAYNNNYPINACM
YFDRYPKAVFSDCDGHSAADAYCHNQGYARAIDYTLTSFRTLKTPSSFIM
GSQKIVEAALMDDASSVLTDVQCDQA*
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Synonyms
Publications