NO05G05260.1, NO05G05260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05260.1
Unique NameNO05G05260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1711
Alignment locationchr5:1398237..1400656 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1398237..1400656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05260.1 vs.
Match: EWM27869.1 (hypothetical protein Naga_100094g6 [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 5.200e-31
Identity = 69/125 (55.20%), Postives = 91/125 (72.80%), Query Frame = 0 
Query:    1 MRFLSLIVSAVAVLGAVADPEPLRGQGRALYVSTFGGIAYNNNYPINACMYFDRYPKAVFSDCDGHSAADAYCHNQGYARAIDYTLTSFRTLKTPSSFIMGSQKIVEAALMDDASSVLTDVQCDQ 126
            MR  SLI SA  +L A A  E LRG  R+LYV+T+GG A+  NYPI+AC +F+RYP+A F DCDG +AAD +CH +GYAR++ + LT+FR LK  SS ++GS K+VEAAL +    V+T+VQC Q
Sbjct:   14 MRTFSLITSATVLLCASAATENLRGSERSLYVATYGGNAFMGNYPIDACFHFERYPEAKFWDCDGKAAADFFCHKEGYARSVGFDLTNFRGLKLASSLVVGSDKVVEAALHEPEQKVITNVQCAQ 138
The following BLAST results are available for this feature:
BLAST of NO05G05260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27869.15.200e-3155.20hypothetical protein Naga_100094g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05260NO05G05260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05260.1NO05G05260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05260.1.cds1NO05G05260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05260.1.cds2NO05G05260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05260.1.cds3NO05G05260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05260.1.cds4NO05G05260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05260.1 ID=NO05G05260.1|Name=NO05G05260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
CCTCCTCACACAGAATTTTTCGTTCGCTATTGATTTTCTCTGATTCCTTA
TTGACTGTATTATCTATCATCCCTATGTCTTTACTATCTACCATTGGCAA
GGGGCTTTTTTGATGCCTCCTGCCCAATCATTGGCCATCTTCCTTGCCCC
TCCTGCTCTCCTTGTCCGCCAAGACCGCTTATCCACTGTACTGAGGCCTT
CGCACGCGGAGAGAAAGTTCAGAGAGTTTTAATTTCCCTGCCATTTTCTG
CTGAAGTGTAGCTGCAAGGAAGCAATATGCAAAGACCCCACTTTCCCCCC
CTATACTCTATACAACCAGCCACGGGGTGGGACACGACATGGCACCTCTG
GAACAGTGACCACTCCCTTACCACGCGGCTGCATCGACATTCCTGACGCA
AGGCCTTTGTCCCCTTTGTACAAGCCACTTCCCCCCCAAAAAATATGCCC
ACTTACCATCGGACCCCCGCCCCAGCGGCGACAACATGCCCACTCTCCCA
TGACACCTTACATTCTTCTCCCTTTTCTCCCCCCTCCCCCTTAATTCACA
CATGTACGCCGCCGCCTCTCCCGTCTTTTTCCGTGCTGTTCTTCTGATCA
TCTCAAAACGTCCCCCCGTAGCCTTCCAACGTCACTACCACCCAGCACCT
TAACTATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTCGGT
GCTGTGGCTGATCCCGAGCCCCTGCGCGGTCAGGGGCGTGCACTGTACGT
GTCGACCTTCGGTGGCATCGCCTACAACAATAACTATCCCATCAACGCCT
GTATGTACTTCGACCGGTACCCCAAGGCCGTATTCAGCGACTGCGACGGA
CACTCCGCCGCAGATGCTTACTGCCACAACCAGGGCTATGCTCGTGCAAT
CGACTACACGCTCACCTCCTTCAGGACACTCAAGACACCCTCCTCCTTCA
TCATGGGCAGCCAAAAAATCGTTGAGGCCGCTCTCATGGATGACGCCAGC
TCGGTCCTGACGGACGTCCAATGCGATCAGGCCTAAGCCACTCTCTTCTC
GCTACTTGACCCTACCCTCTTTCTCTCGGTGTTGAAGGAGGGAAGGAAGC
AGGAGGAGGGAGGGGGCGCGGTAGGGACAGCAATAGCAGCAGCAGCAGCA
GAATATTTTGTGAAGTCAAATTTTTGGGGGCGGACAGAAGGAAAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGCTTAATGCGCGTCTACT
ATTTCCTTTTCTCCCCCTCCTCTTCCCATTGCTTGTGGCCCCCGTGCATG
TGTGATTGAATATATATATATATGTGTGTGTACCGTCGTTGCCTTGGAGG
AACAAGCTTGCTAGAGAAAAAGGGATGAGAAGAAAGCATCAGCGGCAGTT
GAAAGAGGAGGAGAAGGATCTGCAGCAACCATGGCAGCAGTGATGCCGTA
ACGAGGAGGGAGGGAGATCGGAAGACGGAGGGTGCAGGCATTGCGAGGGT
ATGTACGTGGTACGTGAGAAAGAATGAATGGACTTCTCCTCAACGATTGA
AGAGTGAGGGAGGTGGGGGAGGGCTACCCCTCCCTCCTCCTGTAGAAATC
TAAATCTTAGTGTAATGTGTATGCGTTGAGGCAAGATAGCGGGAGAGTGC
GTTTGGAAATGGTCTATAACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAG
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protein sequence of NO05G05260.1

>NO05G05260.1-protein ID=NO05G05260.1-protein|Name=NO05G05260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MRFLSLIVSAVAVLGAVADPEPLRGQGRALYVSTFGGIAYNNNYPINACM
YFDRYPKAVFSDCDGHSAADAYCHNQGYARAIDYTLTSFRTLKTPSSFIM
GSQKIVEAALMDDASSVLTDVQCDQA*
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mRNA from alignment at chr5:1398237..1400656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05260.1 ID=NO05G05260.1|Name=NO05G05260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp|location=Sequence derived from alignment at chr5:1398237..1400656- (Nannochloropsis oceanica)
CCTCCTCACACAGAATTTTTCGTTCGCTATTGATTTTCTCTGATTCCTTA
TTGACTGTATTATCTATCATCCCTATGTCTTTACTATCTACCATTGGCAA
GGGGCTTTTTTGATGCCTCCTGCCCAATCATTGGCCATCTTCCTTGCCCC
TCCTGCTCTCCTTGTCCGCCAAGACCGCTTATCCACTGTACTGAGGCCTT
CGCACGCGGAGAGAAAGTTCAGAGAGTTTTAATTTCCCTGCCATTTTCTG
CTGAAGTGTAGCTGCAAGGAAGCAATATGCAAAGACCCCACTTTCCCCCC
CTATACTCTATACAACCAGCCACGGGGTGGGACACGACATGGCACCTCTG
GAACAGTGACCACTCCCTTACCACGCGGCTGCATCGACATTCCTGACGCA
AGGCCTTTGTCCCCTTTGTACAAGCCACTTCCCCCCCAAAAAATATGCCC
ACTTACCATCGGACCCCCGCCCCAGCGGCGACAACATGCCCACTCTCCCA
TGACACCTTACATTCTTCTCCCTTTTCTCCCCCCTCCCCCTTAATTCACA
CATGTACGCCGCCGCCTCTCCCGTCTTTTTCCGTGCTGTTCTTCTGATCA
TCTCAAAACGTCCCCCCGTAGCCTTCCAACGTCACTACCACCCAGCACCT
TAACTATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTCGGT
GCTGTGGCTGATCCCGAGGTACGTATTATATTCAGTGCTTGGGTGCCTTC
ACTGTGGGCTTTTCCGACATCGAAAAATCTCATTTCCCTCAGTAAGCTTT
TTTTTCCTTGAAGGAATTTCCTCCCCAAGGCAGCTACTCTCAATTTACCC
CTCCACTCCCGTATTAAATCCTCATGCCAGAAGGTGCAGGCTCAACAGTT
TGGGTTTGTGTACACACATGTTTGGTATCTTCTGCCTCCCTCTTTCTGCA
ACTGCTCTATTACTTCTCCATTCACATCCTCCCTTTCTCTCCCTTCCTTT
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTTCCTCCCTCC
CTCCCTCCCACACAGCCCCTGCGCGGTCAGGGGCGTGCACTGTACGTGTC
GACCTTCGGTGGCATCGCCTACAACAATAACTATCCCATCAACGCCTGTA
TGTACTTCGACCGGTACCCCAAGGCCGTATTCAGGTAATTCCAGAGGGAG
GGCGGGAGGGAGGGCGTGAGGGAGGGAGGCCAGTGCCAGACGTACCGCCT
AGGTCCTCATTCTTCGGTGGTGTGCATCCCCGGCTCCCTAAAAGGCATTA
CCGGCCACTGACTCACCACCAAGCCCTTCCCTCCCTCCCTTCCTCCCTCC
ATTCCACGTAGCGACTGCGACGGACACTCCGCCGCAGATGCTTACTGCCA
CAACCAGGGCTATGCTCGTGCAATCGACTACACGCTCACCTCCTTCAGGA
CACTCAAGACACCCTGTACGTCCTCCCTTCTCCCTTCTCCCTCTCCTCCT
TCACCCCCTCCCTCCCTCCCTCCTCATCCACCCACGGTCCCTTTCCCTCC
ATCCCTTCTTCCCTCCTTCCCTCCTTCCCTCGGCTCTGAACCCCCCTTAG
CCTCCTTCATCATGGGCAGCCAAAAAATCGTTGAGGCCGCTCTCATGGAT
GACGCCAGCTCGGTCCTGACGGACGTCCAATGCGATCAGGCCTAAGCCAC
TCTCTTCTCGCTACTTGACCCTACCCTCTTTCTCTCGGTGTTGAAGGAGG
GAAGGAAGCAGGAGGAGGGAGGGGGCGCGGTAGGGACAGCAATAGCAGCA
GCAGCAGCAGAATATTTTGTGAAGTCAAATTTTTGGGGGCGGACAGAAGG
AAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGCTTAATGC
GCGTCTACTATTTCCTTTTCTCCCCCTCCTCTTCCCATTGCTTGTGGCCC
CCGTGCATGTGTGATTGAATATATATATATATGTGTGTGTACCGTCGTTG
CCTTGGAGGAACAAGCTTGCTAGAGAAAAAGGGATGAGAAGAAAGCATCA
GCGGCAGTTGAAAGAGGAGGAGAAGGATCTGCAGCAACCATGGCAGCAGT
GATGCCGTAACGAGGAGGGAGGGAGATCGGAAGACGGAGGGTGCAGGCAT
TGCGAGGGTATGTACGTGGTACGTGAGAAAGAATGAATGGACTTCTCCTC
AACGATTGAAGAGTGAGGGAGGTGGGGGAGGGCTACCCCTCCCTCCTCCT
GTAGAAATCTAAATCTTAGTGTAATGTGTATGCGTTGAGGCAAGATAGCG
GGAGAGTGCGTTTGGAAATGGTCTATAACTGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at chr5:1398237..1400656-

>NO05G05260.1 ID=NO05G05260.1|Name=NO05G05260.1|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at chr5:1398237..1400656- (Nannochloropsis oceanica)
ATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTCGGTGCTGT
GGCTGATCCCGAGCCCCTGCGCGGTCAGGGGCGTGCACTGTACGTGTCGA
CCTTCGGTGGCATCGCCTACAACAATAACTATCCCATCAACGCCTGTATG
TACTTCGACCGGTACCCCAAGGCCGTATTCAGCGACTGCGACGGACACTC
CGCCGCAGATGCTTACTGCCACAACCAGGGCTATGCTCGTGCAATCGACT
ACACGCTCACCTCCTTCAGGACACTCAAGACACCCTCCTCCTTCATCATG
GGCAGCCAAAAAATCGTTGAGGCCGCTCTCATGGATGACGCCAGCTCGGT
CCTGACGGACGTCCAATGCGATCAGGCCTAA
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Synonyms
Publications