NO05G05190, NO05G05190 (gene) Nannochloropsis oceanica

Overview
NameNO05G05190
Unique NameNO05G05190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length770
Alignment locationchr5:1360194..1360963 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1360194..1360963 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO:0005576extracellular region
Homology
BLAST of NO05G05190 vs. NCBI_GenBank
Match: EWM27881.1 (hypothetical protein Naga_100323g2 [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 6.500e-45
Identity = 107/236 (45.34%), Postives = 135/236 (57.20%), Query Frame = 0
Query:    1 MHQCVLLTTGVLLAAVSATTTSMTHESEPQHQSLRGVRRALQWGWPSIFPDI-IEEGEAEIESGV------TDVPLNKIMGEQVKAESGGAILLEGKSREGVWVLADTMVKEEEHNINIPRTAMLG--GERPAKVVLPDNYP-QKSEHNDK-----KLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGLRCCDFDHQGPDDVAYLTGLIAEAVK 222
            M +  +L  G  LA      TS T  S P H+    +RRAL+    S+ PD  +  GE E           ++  +   + E      G        + E   V  +      EH   +PR   L    ERPA+VVLPDNYP  +SE   +     KLWP+I+MLHGYGSDA YHDHFLGLS R+NQHGGFLAL+PNGT+NS+G+ FWNG+RCCDFDHQGPDDV YLT L+ EA++
Sbjct:   40 MGRLYVLIAGSFLAGFLVACTSSTPTSPPPHR----LRRALEAF--SLIPDAKVRMGELEAPFAAKEHDVGSEGEIKNTVNEHYNPAGGRGAAASQTTEEVYKVTTENSEPTIEHVRLVPRYITLAEESERPARVVLPDNYPADQSEDGSEDQAGAKLWPLIMMLHGYGSDASYHDHFLGLSARINQHGGFLALLPNGTVNSEGKHFWNGIRCCDFDHQGPDDVTYLTSLVKEAIR 269          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: PKN58233.1 (hypothetical protein CVU56_06840 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14])

HSP 1 Score: 94.7 bits (234), Expect = 3.700e-16
Identity = 47/109 (43.12%), Postives = 63/109 (57.80%), Query Frame = 0
Query:  113 PRTAMLGGERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNG--LRCCDFDHQGPDDVAYLTGLIAEA 220
            P    LGG+RPA V LPD Y   +        P++++LHGY +  P  D +LG  ER  +  G +A++PNGT ++ G  FWN     CC+F + G DD  YL GLIAEA
Sbjct:   98 PSLDPLGGDRPALVYLPDGYDAATP------TPLVILLHGYSATGPVQDLYLGFHERATE-AGLIAMVPNGTADAFGVHFWNADPAWCCNFANSGVDDEGYLLGLIAEA 199          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: EWM20751.1 (hypothetical protein Naga_101026g2 [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15
Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 0
Query:  122 RPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVN--QHGGFLALMPNGTLNSQGR-RFWNGLRCCDFDHQGPDDVAYLTG 215
            RPA+VVLP+ Y     +  ++L+P++L+LHG+ S+  YHD +LG+S R +  + GGF+A++PNGT ++  + RFWN   CCD+     DD  YLTG
Sbjct:   76 RPARVVLPNAY-----NETRRLYPLVLVLHGWKSNGDYHDFYLGVSARASDPRLGGFIAVIPNGTWDAMRQSRFWNAGTCCDYSRSNVDDEKYLTG 166          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: AKF09709.1 (Putative LIPOPROTEIN LPQP [Sandaracinus amylolyticus])

HSP 1 Score: 92.4 bits (228), Expect = 1.900e-15
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:  121 ERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNG-LRCCDFDHQGPDDVAYLTGLIAEA 220
            ERPA++V+PD       H+     P++++LHGY + AP  D +   ++      GF  L+PNGT +S+G RFWN    CCDFD  G DDVAYLT L+ EA
Sbjct:   43 ERPARLVVPD------AHDGTTPLPLVVLLHGYSASAPLQDTYWRATQAARSM-GFYLLLPNGTTDSRGNRFWNATTACCDFDMTGVDDVAYLTSLLDEA 135          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: WP_053236735.1 (hypothetical protein [Sandaracinus amylolyticus])

HSP 1 Score: 92.4 bits (228), Expect = 1.900e-15
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:  121 ERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNG-LRCCDFDHQGPDDVAYLTGLIAEA 220
            ERPA++V+PD       H+     P++++LHGY + AP  D +   ++      GF  L+PNGT +S+G RFWN    CCDFD  G DDVAYLT L+ EA
Sbjct:   52 ERPARLVVPD------AHDGTTPLPLVVLLHGYSASAPLQDTYWRATQAARSM-GFYLLLPNGTTDSRGNRFWNATTACCDFDMTGVDDVAYLTSLLDEA 144          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: PKN57482.1 (hypothetical protein CVU56_10805 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14])

HSP 1 Score: 89.7 bits (221), Expect = 1.200e-14
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 0
Query:  116 AMLGGERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNG--LRCCDFDHQGPDDVAYLTGLIAEA 220
            A LGG+RPA V  P +Y         + WP++++LHGYG+     D++LG         G++A++P GT++  G++FWN     CC+F     DD  YL GL+A+A
Sbjct:   79 ATLGGDRPASVYYPADY------GGGRTWPLVILLHGYGASGLIEDYYLGFHAAATA-AGYVAVVPEGTVDGSGKQFWNADPSWCCNFGQSAVDDEGYLLGLVADA 177          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: AIA16207.1 (Phospholipase/Carboxylesterase [uncultured bacterium])

HSP 1 Score: 84.7 bits (208), Expect = 3.900e-13
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0
Query:  121 ERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGL-RCCDFDHQGPDDVAYLTGLIAEAV 221
            ERPA + LP  Y      + KK  P++LMLHG G+     D  LGLS   + H G+L LMP G + S G+ FWN    CCD D+ G DD  YL  L+ E +
Sbjct:   63 ERPATLKLPKQY------DGKKKLPLVLMLHGRGNTPEIADILLGLSRAQDAH-GYLLLMPKGKVRSDGQTFWNATPECCDTDNTGIDDSGYLQNLVRETI 156          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: AIA16541.1 (Phospholipase/Carboxylesterase [uncultured bacterium])

HSP 1 Score: 84.7 bits (208), Expect = 3.900e-13
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0
Query:  121 ERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGL-RCCDFDHQGPDDVAYLTGLIAEAV 221
            ERPA + LP  Y      + KK  P++LMLHG G+     D  LGLS   + H G+L LMP G + S G+ FWN    CCD D+ G DD  YL  L+ E +
Sbjct:   63 ERPATLKLPKQY------DGKKKLPLVLMLHGRGNTPEIADILLGLSRAQDAH-GYLLLMPKGKVRSDGQTFWNATPECCDTDNTGIDDSGYLQNLVRETI 156          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: OUW08007.1 (hypothetical protein CBD23_08435 [Gammaproteobacteria bacterium TMED163])

HSP 1 Score: 84.0 bits (206), Expect = 6.600e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0
Query:  120 GERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGL-RCCDFDHQGPDDVAYLTGLIAEAVK 222
            G  P ++++P NY      N+K   P+I++LHG+ S     D +LG SE  N + GFL + P G++N +G+ FWN    CCDF     DDV Y+  LI +A+K
Sbjct:   29 GRGPVQLIVPQNY------NEKNSTPLIVLLHGFRSTGSIQDSYLGFSEIANDN-GFLFIAPTGSVNPEGKTFWNATPACCDFFGSNVDDVGYIKDLI-DAIK 123          
BLAST of NO05G05190 vs. NCBI_GenBank
Match: EWM21518.1 (hypothetical protein Naga_100679g2 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-12
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 0
Query:  110 INIPRTAMLGGERPAKVVLPDNYPQKSEHNDKKLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGLRCCDFDHQGPDDVAYLTGLIAEA 220
            I +P    L   RPA V+ P +             P++++LH +GS+A  H  +LG+SER+++   F+AL+PNG  NS+G RFWN   CC+ +    DD+ YLT L+ EA
Sbjct:  145 IALPSFIGLESGRPAAVLYPPHAALSPP------LPLVVVLHAWGSNASEHAAYLGVSERLSRF-QFIALLPNGIKNSKGYRFWNAPACCNREGIAVDDLGYLTDLLQEA 247          
The following BLAST results are available for this feature:
BLAST of NO05G05190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27881.16.500e-4545.34hypothetical protein Naga_100323g2 [Nannochloropsi... [more]
PKN58233.13.700e-1643.12hypothetical protein CVU56_06840 [Deltaproteobacte... [more]
EWM20751.11.100e-1544.79hypothetical protein Naga_101026g2 [Nannochloropsi... [more]
AKF09709.11.900e-1545.00Putative LIPOPROTEIN LPQP [Sandaracinus amylolytic... [more]
WP_053236735.11.900e-1545.00hypothetical protein [Sandaracinus amylolyticus][more]
PKN57482.11.200e-1437.74hypothetical protein CVU56_10805 [Deltaproteobacte... [more]
AIA16207.13.900e-1343.56Phospholipase/Carboxylesterase [uncultured bacteri... [more]
AIA16541.13.900e-1343.56Phospholipase/Carboxylesterase [uncultured bacteri... [more]
OUW08007.16.600e-1339.81hypothetical protein CBD23_08435 [Gammaproteobacte... [more]
EWM21518.11.500e-1239.09hypothetical protein Naga_100679g2 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05190.1NO05G05190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05190.1NO05G05190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05190 ID=NO05G05190|Name=NO05G05190|organism=Nannochloropsis oceanica|type=gene|length=770bp
ATGCATCAATGCGTCCTCCTCACCACCGGCGTTCTCTTGGCTGCCGTCAG
TGCCACCACTACCAGCATGACACATGAGTCTGAACCCCAGCACCAGAGCC
TCCGTGGTGTCCGTCGTGCCCTCCAATGGGGATGGCCCTCCATTTTCCCT
GATATTATTGAGGAGGGGGAGGCCGAGATCGAGAGTGGCGTGACGGACGT
GCCGCTCAATAAAATCATGGGAGAGCAGGTCAAGGCAGAAAGTGGAGGGG
CAATATTGCTAGAGGGGAAATCCCGAGAAGGTGTGTGGGTGTTAGCGGAT
ACGATGGTAAAGGAGGAAGAGCACAACATAAACATTCCACGGACGGCGAT
GCTGGGTGGAGAGCGACCGGCCAAGGTGGTGCTACCCGACAACTACCCCC
AGAAGAGCGAGCACAATGATAAGAAGCTGTGGCCTATGATTTTAATGCTC
Cgtaagtcgccaattgccgagagtgtgaaagatcggacctcctcacccag
tatttaactctatgtccacaacacacacactgctcccgcccattctccta
catagACGGTTACGGTTCTGACGCGCCTTACCATGACCACTTCTTGGGTC
TGAGTGAACGGGTGAATCAGCACGGTGGGTTTCTGGCGCTGATGCCGAAT
GGGACGCTCAACAGCCAAGGCCGCCGATTTTGGAATGGACTACGTTGCTG
TGATTTCGATCACCAGGGGCCTGATGACGTAGCTTACTTGACCGGGCTGA
TTGCTGAGGCAGTTAAGTAA
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protein sequence of NO05G05190.1

>NO05G05190.1-protein ID=NO05G05190.1-protein|Name=NO05G05190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MHQCVLLTTGVLLAAVSATTTSMTHESEPQHQSLRGVRRALQWGWPSIFP
DIIEEGEAEIESGVTDVPLNKIMGEQVKAESGGAILLEGKSREGVWVLAD
TMVKEEEHNINIPRTAMLGGERPAKVVLPDNYPQKSEHNDKKLWPMILML
HGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGLRCCD
FDHQGPDDVAYLTGLIAEAVK*
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Synonyms
Publications