NO05G05190.1, NO05G05190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05190.1
Unique NameNO05G05190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr5:1360194..1360963 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1360194..1360963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05190.1 vs.
Match: EWM27881.1 (hypothetical protein Naga_100323g2 [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 6.500e-45
Identity = 107/236 (45.34%), Postives = 135/236 (57.20%), Query Frame = 0 
Query:    1 MHQCVLLTTGVLLAAVSATTTSMTHESEPQHQSLRGVRRALQWGWPSIFPDI-IEEGEAEIESGV------TDVPLNKIMGEQVKAESGGAILLEGKSREGVWVLADTMVKEEEHNINIPRTAMLG--GERPAKVVLPDNYP-QKSEHNDK-----KLWPMILMLHGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGLRCCDFDHQGPDDVAYLTGLIAEAVK 222
            M +  +L  G  LA      TS T  S P H+    +RRAL+    S+ PD  +  GE E           ++  +   + E      G        + E   V  +      EH   +PR   L    ERPA+VVLPDNYP  +SE   +     KLWP+I+MLHGYGSDA YHDHFLGLS R+NQHGGFLAL+PNGT+NS+G+ FWNG+RCCDFDHQGPDDV YLT L+ EA++
Sbjct:   40 MGRLYVLIAGSFLAGFLVACTSSTPTSPPPHR----LRRALEAF--SLIPDAKVRMGELEAPFAAKEHDVGSEGEIKNTVNEHYNPAGGRGAAASQTTEEVYKVTTENSEPTIEHVRLVPRYITLAEESERPARVVLPDNYPADQSEDGSEDQAGAKLWPLIMMLHGYGSDASYHDHFLGLSARINQHGGFLALLPNGTVNSEGKHFWNGIRCCDFDHQGPDDVTYLTSLVKEAIR 269
The following BLAST results are available for this feature:
BLAST of NO05G05190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27881.16.500e-4545.34hypothetical protein Naga_100323g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05190NO05G05190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05190.1NO05G05190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05190.1.cds1NO05G05190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05190.1.cds2NO05G05190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05190.1 ID=NO05G05190.1|Name=NO05G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
ATGCATCAATGCGTCCTCCTCACCACCGGCGTTCTCTTGGCTGCCGTCAG
TGCCACCACTACCAGCATGACACATGAGTCTGAACCCCAGCACCAGAGCC
TCCGTGGTGTCCGTCGTGCCCTCCAATGGGGATGGCCCTCCATTTTCCCT
GATATTATTGAGGAGGGGGAGGCCGAGATCGAGAGTGGCGTGACGGACGT
GCCGCTCAATAAAATCATGGGAGAGCAGGTCAAGGCAGAAAGTGGAGGGG
CAATATTGCTAGAGGGGAAATCCCGAGAAGGTGTGTGGGTGTTAGCGGAT
ACGATGGTAAAGGAGGAAGAGCACAACATAAACATTCCACGGACGGCGAT
GCTGGGTGGAGAGCGACCGGCCAAGGTGGTGCTACCCGACAACTACCCCC
AGAAGAGCGAGCACAATGATAAGAAGCTGTGGCCTATGATTTTAATGCTC
CACGGTTACGGTTCTGACGCGCCTTACCATGACCACTTCTTGGGTCTGAG
TGAACGGGTGAATCAGCACGGTGGGTTTCTGGCGCTGATGCCGAATGGGA
CGCTCAACAGCCAAGGCCGCCGATTTTGGAATGGACTACGTTGCTGTGAT
TTCGATCACCAGGGGCCTGATGACGTAGCTTACTTGACCGGGCTGATTGC
TGAGGCAGTTAAGTAA
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protein sequence of NO05G05190.1

>NO05G05190.1-protein ID=NO05G05190.1-protein|Name=NO05G05190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MHQCVLLTTGVLLAAVSATTTSMTHESEPQHQSLRGVRRALQWGWPSIFP
DIIEEGEAEIESGVTDVPLNKIMGEQVKAESGGAILLEGKSREGVWVLAD
TMVKEEEHNINIPRTAMLGGERPAKVVLPDNYPQKSEHNDKKLWPMILML
HGYGSDAPYHDHFLGLSERVNQHGGFLALMPNGTLNSQGRRFWNGLRCCD
FDHQGPDDVAYLTGLIAEAVK*
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mRNA from alignment at chr5:1360194..1360963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05190.1 ID=NO05G05190.1|Name=NO05G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=770bp|location=Sequence derived from alignment at chr5:1360194..1360963- (Nannochloropsis oceanica)
ATGCATCAATGCGTCCTCCTCACCACCGGCGTTCTCTTGGCTGCCGTCAG
TGCCACCACTACCAGCATGACACATGAGTCTGAACCCCAGCACCAGAGCC
TCCGTGGTGTCCGTCGTGCCCTCCAATGGGGATGGCCCTCCATTTTCCCT
GATATTATTGAGGAGGGGGAGGCCGAGATCGAGAGTGGCGTGACGGACGT
GCCGCTCAATAAAATCATGGGAGAGCAGGTCAAGGCAGAAAGTGGAGGGG
CAATATTGCTAGAGGGGAAATCCCGAGAAGGTGTGTGGGTGTTAGCGGAT
ACGATGGTAAAGGAGGAAGAGCACAACATAAACATTCCACGGACGGCGAT
GCTGGGTGGAGAGCGACCGGCCAAGGTGGTGCTACCCGACAACTACCCCC
AGAAGAGCGAGCACAATGATAAGAAGCTGTGGCCTATGATTTTAATGCTC
CGTAAGTCGCCAATTGCCGAGAGTGTGAAAGATCGGACCTCCTCACCCAG
TATTTAACTCTATGTCCACAACACACACACTGCTCCCGCCCATTCTCCTA
CATAGACGGTTACGGTTCTGACGCGCCTTACCATGACCACTTCTTGGGTC
TGAGTGAACGGGTGAATCAGCACGGTGGGTTTCTGGCGCTGATGCCGAAT
GGGACGCTCAACAGCCAAGGCCGCCGATTTTGGAATGGACTACGTTGCTG
TGATTTCGATCACCAGGGGCCTGATGACGTAGCTTACTTGACCGGGCTGA
TTGCTGAGGCAGTTAAGTAA
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Coding sequence (CDS) from alignment at chr5:1360194..1360963-

>NO05G05190.1 ID=NO05G05190.1|Name=NO05G05190.1|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at chr5:1360194..1360963- (Nannochloropsis oceanica)
ATGCATCAATGCGTCCTCCTCACCACCGGCGTTCTCTTGGCTGCCGTCAG
TGCCACCACTACCAGCATGACACATGAGTCTGAACCCCAGCACCAGAGCC
TCCGTGGTGTCCGTCGTGCCCTCCAATGGGGATGGCCCTCCATTTTCCCT
GATATTATTGAGGAGGGGGAGGCCGAGATCGAGAGTGGCGTGACGGACGT
GCCGCTCAATAAAATCATGGGAGAGCAGGTCAAGGCAGAAAGTGGAGGGG
CAATATTGCTAGAGGGGAAATCCCGAGAAGGTGTGTGGGTGTTAGCGGAT
ACGATGGTAAAGGAGGAAGAGCACAACATAAACATTCCACGGACGGCGAT
GCTGGGTGGAGAGCGACCGGCCAAGGTGGTGCTACCCGACAACTACCCCC
AGAAGAGCGAGCACAATGATAAGAAGCTGTGGCCTATGATTTTAATGCTC
CACGGTTACGGTTCTGACGCGCCTTACCATGACCACTTCTTGGGTCTGAG
TGAACGGGTGAATCAGCACGGTGGGTTTCTGGCGCTGATGCCGAATGGGA
CGCTCAACAGCCAAGGCCGCCGATTTTGGAATGGACTACGTTGCTGTGAT
TTCGATCACCAGGGGCCTGATGACGTAGCTTACTTGACCGGGCTGATTGC
TGAGGCAGTTAAGTAA
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Synonyms
Publications