NO05G05150, NO05G05150 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G05150
Unique Name	NO05G05150
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2115
Alignment location	chr5:1353270..1355384 -

Link to JBrowse

Properties


Property Name	Value
Description	Srp72

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1353270..1355384 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR026270	SRP72
IPR019734	TPR_repeat

Vocabulary: **Cellular Component**
Term	Definition
GO:0005623	cell

Homology

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: ETK82668.1 (hypothetical protein L915_11985 [Phytophthora parasitica])

HSP 1 Score: 146.0 bits (367), Expect = 4.500e-31
Identity = 161/556 (28.96%), Postives = 260/556 (46.76%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT+    SA +     L AAL    + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L+   L+   + + HL  Q  F++G Y+++  ++  L+S A   G +  EL TNL AA+ +A R QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C    E +G + + + +E + I+ + A+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL P Q+  +  N+AL+L    K ++ ++ LE +K++           +A + + + ++D  +           A  +E+++      D        LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    1 MATAVSADSAVAASFSELNAAL----KRENYTRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYDFLNTEKAYCLYRLKQDDEALKLLEGGDLEALSTAQLHLAAQLHFRQGNYNQSICIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSQELKDR----EIPIDDGFEVAFNKSFVAIQSGDWGAAEELLLTAERLCRDTFEAEGASEAEIEEEVAVIKTQQAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVGAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSPAQQEAILTNRALLLCLLNKTEECRESLEVLKKQFPSSKS-----IADIVVLLAIKDQSA-----------AGAIEQLQ-----GDVSVGGCLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 516

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: ETL89285.1 (hypothetical protein L917_11757 [Phytophthora parasitica])

HSP 1 Score: 146.0 bits (367), Expect = 4.500e-31
Identity = 161/556 (28.96%), Postives = 260/556 (46.76%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT+    SA +     L AAL    + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L+   L+   + + HL  Q  F++G Y+++  ++  L+S A   G +  EL TNL AA+ +A R QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C    E +G + + + +E + I+ + A+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL P Q+  +  N+AL+L    K ++ ++ LE +K++           +A + + + ++D  +           A  +E+++      D        LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    1 MATAVSADSAVAASFSELNAAL----KRENYTRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYDFLNTEKAYCLYRLKQDDEALKLLEGGDLEALSTAQLHLAAQLHFRQGNYNQSICIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSQELKDR----EIHIDDGFEVAFNKSFVAIQSGDWGAAEELLLTAERLCRDTFEAEGASEAEIGEEVAVIKTQQAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVGAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSPAQQEAILTNRALLLCLLNKTEECRESLEVLKKQFPSSKS-----IADIVVLLAIKDQSA-----------AGAIEQLQ-----GDVSVGGRLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 516

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: ETM42551.1 (hypothetical protein L914_11820 [Phytophthora parasitica])

HSP 1 Score: 146.0 bits (367), Expect = 4.500e-31
Identity = 161/556 (28.96%), Postives = 260/556 (46.76%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT+    SA +     L AAL    + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L+   L+   + + HL  Q  F++G Y+++  ++  L+S A   G +  EL TNL AA+ +A R QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C    E +G + + + +E + I+ + A+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL P Q+  +  N+AL+L    K ++ ++ LE +K++           +A + + + ++D  +           A  +E+++      D        LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    1 MATAVSADSAVAASFSELNAAL----KRENYTRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYDFLNTEKAYCLYRLKQDDEALKLLEGGDLEALSTAQLHLAAQLHFRQGNYNQSICIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSQELKDR----EIPIDDGFEVAFNKSFVAIQSGDWGAAEELLLTAERLCRDTFEAEGASEAEIGEEVAVIKTQQAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVGAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSPAQQEAILTNRALLLCLLNKTEECRESLEVLKKQFPSSKS-----IADIVVLLAIKDQSA-----------AGAIEQLQ-----GDVSVGGRLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 516

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: ETP40495.1 (hypothetical protein F442_12181 [Phytophthora parasitica P10297])

HSP 1 Score: 146.0 bits (367), Expect = 4.500e-31
Identity = 161/556 (28.96%), Postives = 260/556 (46.76%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT+    SA +     L AAL    + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L+   L+   + + HL  Q  F++G Y+++  ++  L+S A   G +  EL TNL AA+ +A R QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C    E +G + + + +E + I+ + A+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL P Q+  +  N+AL+L    K ++ ++ LE +K++           +A + + + ++D  +           A  +E+++      D        LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    1 MATAVSADSAVAASFSELNAAL----KRENYTRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYDFLNTEKAYCLYRLKQDDEALKLLEGGDLEALSTAQLHLAAQLHFRQGNYNQSICIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSQELKDR----EIPIDDGFEVAFNKSFVAIQSGDWGAAEELLLTAERLCRDTFEAEGASEAEIEEEVAVIKTQQAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVDAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSPAQQEAILTNRALLLCLLNKTEECRESLEVLKKQFPSSKS-----IADIVVLLAIKDQSA-----------AGAIEQLQ-----GDVSVGGCLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 516

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: XP_002998715.1 (signal recognition particle, putative [Phytophthora infestans T30-4] >EEY70068.1 signal recognition particle, putative [Phytophthora infestans T30-4])

HSP 1 Score: 145.6 bits (366), Expect = 5.900e-31
Identity = 157/544 (28.86%), Postives = 251/544 (46.14%), Query Frame = 0

Query:   19 YAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSA----DAEKTVG--TALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            ++ L+ A + E++  A+    K+    PD+++A   K VA   L   D AL L+       +E+AY LYRL +  +AL +L+   L+ + + + HL  Q  F++G YD++  ++  L+S  G  G +  EL TNL AA+ +A + QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C      +G T + + +E + I+ +LA+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL  +QR  +  N+AL+L    K +D +  LE +K++                             S    AD+  LL      A  A      + +VG    LA V + +G + ++A  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    9 FSELNAAVKRENYSRAVDICNKIRSKFPDDIDAVKVKCVALIRLEKLDKALELAVKYDFLSMEKAYCLYRLKQDDDALKLLEGGDLETQNTPQLHLAAQLHFRKGNYDQSIRIYELLLSR-GQEGDDLLELQTNLLAAYASAGKSQELKDR----EIPIDDGFEVAFNKSFVAIQSGDWEAAEELLLTAERLCRDTFGAEGATEAEIEEEVAVIKTQLAFVKQMRGDLDGALSDYRDVLK--LKLRNRAVGAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSSVQREAILTNRALLLCLLNKTEDCRDSLETLKKQ---------------------------FPSSKSIADIVVLLAIKNQSATGAIEQLQGDMSVGGRLGLAHVYLTEGQVVKSAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGTLDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 510

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: OWZ06160.1 (Signal recognition particle [Phytophthora megakarya])

HSP 1 Score: 145.6 bits (366), Expect = 5.900e-31
Identity = 162/556 (29.14%), Postives = 264/556 (47.48%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT A VA++ SE        L+ A + E++   +    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L    L+ + + + HL  Q  F++G YD++  ++  L S A   G +  EL TNL AA+ +A R QE   R    E  ++  +E+AFN     I +GD   AE  L+ A   C      +G + + + +E + I+ +LA+V   +G    A      ++    KL +  V V+A NN   +R+     +D+  +LK++K       S KL P Q+  +  N+ L+L    K+++ ++ L+ ++++  +        +A + + + ++D        SP    AA ++++R      D     G  LA V + +G + +AA  + SI  L   P   ATL +LY + G    +  V + ALA        S + +K+ +G    +  +  +  AAN    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LP V  E G+D   LE
Sbjct:    1 MATDAAVAASFSE--------LNAALKRENYARVVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYEFLSTEKAYCLYRLKKDDEALNVLVGGDLEMQSTAQLHLAAQMHFRKGDYDQSIRIYELLFSRA-QEGDDLLELQTNLLAAYASAGRSQELKER----EIPIEDGFEVAFNKSFVAIQSGDWKMAEELLQTAERLCRDTFVSEGASEAEIDEEVAVIKTQLAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVGVVASNNIVTIRK----DRDVLDSLKRLKSIDAAVLSDKLNPEQQEAILTNRTLLLCLVNKVEECRENLQVLRKQFPESKS-----IADIVVLLAIKDQ-------SP----AAAIDQLR-----GDMSVGGGLGLAHVYLTEGLVVKAAECIRSIEQLAHSPGTVATLVALYEQAGDSGTAEIVLETALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAANAYLELLEG--ETAGALDRDLRLRSMASLVVALSFFDAEAAEARCAM-LPTVK-ESGVDPSELE 512

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: XP_008908569.1 (hypothetical protein PPTG_13874 [Phytophthora parasitica INRA-310] >ETN06067.1 hypothetical protein PPTG_13874 [Phytophthora parasitica INRA-310])

HSP 1 Score: 145.2 bits (365), Expect = 7.700e-31
Identity = 161/556 (28.96%), Postives = 260/556 (46.76%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT+    SA +     L AAL    + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L+   L+   + + HL  Q  F++G Y+++  ++  L+S A   G +  EL TNL AA+ +A R QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C    E +G + + + +E + I+ + A+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL P Q+  +  N+AL+L    K ++ ++ LE +K++           +A + + + ++D  +           A  +E+++      D        LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    1 MATAVSADSAVAASFSELNAAL----KRENYTRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYDFLNTEKAYCLYRLKQDDEALKLLEGGDLEALSTAQLHLAAQLHFRQGNYNQSICIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSQELKDR----EIPIDDGFEVAFNKSFVAIQSGDWGAAEELLLIAERLCRDTFEAEGASEAEIEEEVAVIKTQQAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVDAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSPAQQEAILTNRALLLCLLNKTEECRESLEVLKKQFPSSKS-----IADIVVLLAIKDQSA-----------AGAIEQLQ-----GDVSVGGCLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 516

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: ETL47994.1 (hypothetical protein L916_02336 [Phytophthora parasitica])

HSP 1 Score: 144.8 bits (364), Expect = 1.000e-30
Identity = 161/556 (28.96%), Postives = 260/556 (46.76%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT+    SA +     L AAL    + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L+   L+   + + HL  Q  F++G Y+++  ++  L+S A   G +  EL TNL AA+ +A R QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C    E +G + + + +E + I+ + A+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL P Q+  +  N+AL+L    K ++ ++ LE +K++           +A + + + ++D  +           A  +E+++      D        LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    1 MATAVSADSAVAASFSELNAAL----KRENYTRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYDFLNTEKAYCLYRLKQDDEALKLLEGGDLEALSTAQLHLAAQLHFRQGNYNQSICIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSQELKDR----EIPIDDGFEVAFNKSFVAIQSGDWGAAEELLLIAERLCRDTFEAEGASEAEIGEEVAVIKTQQAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVDAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSPAQQEAILTNRALLLCLLNKTEECRESLEVLKKQFPSSKS-----IADIVVLLAIKDQSA-----------AGAIEQLQ-----GDVSVGGCLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 516

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: ETP12371.1 (hypothetical protein F441_12243 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 144.4 bits (363), Expect = 1.300e-30
Identity = 160/556 (28.78%), Postives = 259/556 (46.58%), Query Frame = 0

Query:    1 MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT+    SA +     L A L    + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  EAL +L+   L+   + + HL  Q  F++G Y+++  ++  L+S A   G +  EL TNL AA+ +A R QE   R    E  +D  +E+AFN     I +GD  AAE  L  A   C    E +G + + + +E + I+ + A+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  + K++K       S KL P Q+  +  N+AL+L    K ++ ++ LE +K++           +A + + + ++D  +           A  +E+++      D        LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV + ALA        S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E G+D   LE
Sbjct:    1 MATAVSADSAVAASFSELNATL----KRENYTRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYDFLNTEKAYCLYRLKQDDEALKLLEGGDLEALSTAQLHLAAQLHFRQGNYNQSICIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSQELKDR----EIPIDDGFEVAFNKSFVAIQSGDWGAAEELLLTAERLCRDTFEAEGASEAEIGEEVAVIKTQQAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVDAVASNNIVTIRK----DRDVLDSFKRLKNIDASVLSDKLSPAQQEAILTNRALLLCLLNKTEECRESLEVLKKQFPSSKS-----IADIVVLLAIKDQSA-----------AGAIEQLQ-----GDVSVGGRLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLVALYEQAGDSASAQAVLESALAHHKAGDYTSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESGVDPSELE 516

[Close]

BLAST of NO05G05150 vs. NCBI_GenBank
Match: POM66078.1 (Signal recognition particle [Phytophthora palmivora var. palmivora])

HSP 1 Score: 144.4 bits (363), Expect = 1.300e-30
Identity = 165/560 (29.46%), Postives = 267/560 (47.68%), Query Frame = 0

Query:    1 MAT--SAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVA--ELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFR-HLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKS-KLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVG--TALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFK-IKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEALE 552
            MAT  SA  A AAS      ++ L+ A + E++  A+    K+    PD+V+A   K VA   L   D AL L+        E+AY LYRL +  +AL +L+   L+ + + + HL  Q  F++G YD++  ++  L+S A   G +  EL TNL AA+ +A R  E   R    E  +D  +E+AFN     I +GD   AE  L  A   C    E +G T + + +E + I+ +LA+V   +G    A      ++    KL +  V  +A NN   +R+     +D+  +LK++K       S KL P Q+  +  N+ L+L    K ++ ++ LEA++++       A   +A + + + ++D        SP    AA +++++        + +VG    LA V + +G + +AA  + SI  L   P   ATL +LY + G    + AV   AL         S + +K+ +G    +  +  +  AA+    LL G  +    L+ D RLR++A+LVVA S+ D   AE      LPAV  E  +D   LE
Sbjct:    1 MATTVSADAAVAAS------FSELNAALKRENYSRAVDICNKIRSKFPDDVDAVKVKCVALIRLEKFDKALELAVKYEFLSTEKAYCLYRLKKDNDALKLLEGEDLETQNTAQLHLAAQLHFRKGNYDQSIRIYELLLSRA-QEGDDLLELQTNLLAAYASAGRSHELKDR----EIPIDDGFEVAFNKSFVAIQSGDWVEAEELLLIAERLCRDTFEAEGATEAEIEEEVAVIKTQLAFVKQMRGDLDGALSDYRNVLK--LKLRNRAVGAVASNNIVTIRK----DRDVLDSLKRLKNIDAAVLSDKLNPAQQEAILTNRTLLLCLMNKTEECRESLEALRKQ-----FPASKSIADIVVLLAIKDQ-------SP----AAAIDQLQN-------DMSVGGRLGLAHVYLTEGQVLKAAECIRSIEQLAHSPGTVATLIALYEQAGDSISAQAVLKSALVHHKTGNYSSEQAMKIREGDCWYKIQKKQYREAADAYLELLEG--ETAGALDRDLRLRSMASLVVALSFCDAEAAEARCAM-LPAVE-ESAIDPSELE 516

The following BLAST results are available for this feature:

BLAST of NO05G05150 vs. NCBI_GenBank

BLAST of NO05G05150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
ETK82668.1	4.500e-31	28.96	hypothetical protein L915_11985 [Phytophthora para...	[more]
ETL89285.1	4.500e-31	28.96	hypothetical protein L917_11757 [Phytophthora para...	[more]
ETM42551.1	4.500e-31	28.96	hypothetical protein L914_11820 [Phytophthora para...	[more]
ETP40495.1	4.500e-31	28.96	hypothetical protein F442_12181 [Phytophthora para...	[more]
XP_002998715.1	5.900e-31	28.86	signal recognition particle, putative [Phytophthor...	[more]
OWZ06160.1	5.900e-31	29.14	Signal recognition particle [Phytophthora megakary...	[more]
XP_008908569.1	7.700e-31	28.96	hypothetical protein PPTG_13874 [Phytophthora para...	[more]
ETL47994.1	1.000e-30	28.96	hypothetical protein L916_02336 [Phytophthora para...	[more]
ETP12371.1	1.300e-30	28.78	hypothetical protein F441_12243 [Phytophthora para...	[more]
POM66078.1	1.300e-30	29.46	Signal recognition particle [Phytophthora palmivor...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL085	nonsL085	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR078	ncniR078	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR117	ngnoR117	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003328	NSK003328	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G05150.1	NO05G05150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|643322	gene_10590	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100323g4	gene2678	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G05150.1	NO05G05150.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G05150 ID=NO05G05150|Name=NO05G05150|organism=Nannochloropsis oceanica|type=gene|length=2115bp
ATGGCAACATCGGCAGGGGTAGCCAGCGCCGCGTCGGAGAAGCTTCGGCC
TTTATACGCAGCGCTGCACGAGGCCTTTGAGGAAGAAGACCATGAAGCTG
CCTTGGTCGCTGCCACCAAGCTCCTCAAAGTTGCACCTGATGAGGTCGAG
GCACGGGCAGCCAAGGCAGTGGCCGAGCTTTACACGGGTGACTATGCTCT
CGCCTTGTCCACGGCGTTGCCTGCCCAGGAATTGGAGCGAGCTTATGCCC
TTTATCGGTTGGGGCGAGGCGTCGAAGCCTTGGCCATTCTGGATGCTAGT
GTACTGAAGGATGAGGAGTCTTTCCGGCATCTGCGGGGTCAGGCACTATT
TAAGGAGGGGCGATACGACGAGGCAGCGGATGTCTTTGCAGCGTTGGTGT
CCGAGGCGGGCGCGAATGGAGTGGAAGACCCTGAGTTGATGACAAATCTA
TATGCTGCCTTTGTGGCGGCGCGACGGGGCCAGGAAGCCCTGGCACGCTT
TCCTTTTAGCGAAGAACTGATGGATTCGTGCTACGAGCTTGCGTTCAACA
CGGGGGCCGCCATGATCGATGCAGGGGATCTCACAGCGGCGGAAGCGAGG
CTGCGCGAGGCGCGGGCGACGTGTGTGCGTGTGGGGGAGGAGGATGGGAT
GACCCCGTCGGCATTATTGGACGAAGGGAGCGGGATCCAGATTGAGCTGG
CGTATGTCCTGGCGGCGCAGGGGAGGCGAGGAGAGGCGTTTGAGATGGTG
ACGACGTTGATGAACAAGGCAAGCAAGCTTTCGGACCCCGTGGTGCGTGT
CCTGGCGATAAACAATGCAGCGGCCTTGAGGGAGGGGGGAAGGCACCACA
AGGATATGAGCAGCAACCTGAAGAAGATGAAAGGGCCGTGGAGGGAGGCC
AAAAGCAAGCTACTGCCCATGCAACGCGTGCTCTTGACGTTGAACAAGGC
GCTGATGCTCATGCACTCTGGCAAGATCGACGATGCCAAGCAGGTCCTAG
AGGCGGTCAAGGAGGAGGGTGGGAAGGAGGGAGGGCAGGCTTGGTGGCGG
GTGGCCATGCTGGAAATCGCCATCAAAATGCAAGACGATAAATCGCGTAC
TTCGTCCTACTCCCCCAACGCAGATTTGGCGGCTTTGCTGGAACGCGTGC
GTACTGAAGCCCCCTCTGCCGATGCGGAGAAGACCGTTGGGACGGCCCTC
GCTCAAGTTCTCGTCTACCAAGGCGACCTCCACGAAGCGGCTTCTGTCCT
GGAATCGATCGCTTCTCTTCAGGGCTACCCTGCCCATGCTGCCACTTTGG
CATCGCTGTACGCCAGACTCGGCCAAAAGGATAAGAGTGCCGCTGTCTTT
GACAAAGCTCTGGCCTCCTTCCCTCCCTTTCTCCCTCCCTCTTTTAAAAT
CAAACTTCTACAAGGAGCGGCGGCGGTGCGAACGGCGCAAGGGGATCATG
CAGGAGCAGCCAATGTGTTGAAGCGCTTATTGTCGGGAGGGGAGGACGTC
AAGGAGGAACTGGAGAGTGACGCACGCCTCCGGGCAGTGGCTGCACTGGT
GGTGGCTACCTCGTGGGTGGATGTCGGAGAAGCCGAATTTCTCGCACAGA
AGGAGCTACCGGCTGTTCACCTGGAAGAAGGGCTTGATGCCGAGGCCTTG
GAGGCCCACGGCTTGCCCAGAAGGCGGTCGTCGCTGGCGGGGCTGCGGCG
GACCTCCCTCCCTACCTCTGCAGCAGGAGCAGCAGCAGGGGGAGGGGGAG
GAGGAGCACCTCAAGAGCAAGAGCAAGAGCAACGGCAGCCAAAGAAGAAG
AACCCAGAGGCCATCAAGCGGAGACGCGCCCGGGCCCGTGCCGCCTATCT
TGCCGAACTGGCAGCCGCAGGGAAATACGACGCTGCCCGCCCAGGACCCC
CCCGGACCCTGAGCGGTGGATCGCCAAAAGCCAGAGGTCGTACAACAAGA
GGGGAAAGAAGGGCAGGAGCCGGTTTGTGGGCGCGCAGGGATCCGGGGAT
GGTGCGCAGAAGGATACAGCGAGATTGGACGTGGCATCGCGGGTGGCAGC
GGAGAAGAAAAAGGGAGGGGGGGAGTTGGAGAAGGGGGGCGCGACGGGGG
GAGCTGGTGGGGTGA

protein sequence of NO05G05150.1

>NO05G05150.1-protein ID=NO05G05150.1-protein|Name=NO05G05150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp
MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVE
ARAAKAVAELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDAS
VLKDEESFRHLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNL
YAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEAR
LREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMV
TTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREA
KSKLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWR
VAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTAL
AQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVF
DKALASFPPFLPPSFKIKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDV
KEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEAL
EAHGLPRRRSSLAGLRRTSLPTSAAGAAAGGGGGGAPQEQEQEQRQPKKK
NPEAIKRRRARARAAYLAELAAAGKYDAARPGPPRTLSGGSPKARGRTTR
GERRAGAGLWARRDPGMVRRRIQRDWTWHRGWQRRRKREGGSWRRGARRG
ELVG*

Synonyms

Publications