NO05G05150.1, NO05G05150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05150.1
Unique NameNO05G05150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2115
Alignment locationchr5:1353270..1355384 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1353270..1355384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05150.1 vs.
Match: XP_005854352.1 (signal recognition particle subunit SRP72 [Nannochloropsis gaditana CCMP526]; XP_005856139.1 signal recognition particle subunit SRP72 [Nannochloropsis gaditana CCMP526]; EKU20207.1 signal recognition particle subunit SRP72 [Nannochloropsis gaditana CCMP526]; EKU22005.1 signal recognition particle subunit SRP72 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 594.7 bits (1532), Expect = 3.700e-166
Identity = 378/685 (55.18%), Postives = 469/685 (68.47%), Query Frame = 0 
Query:   10 AASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVEARAAKAVAELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDASVLKDEESFRHLRGQALFKEGRYDEAADVFAALVSEAGANG-VEDPELMTNLYAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEARLREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMVTTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREAKSKLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGG----KEGGQA--WWRVAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEA------PSADAEKTVGTALAQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVFDKALASFPPFLPPSFKIKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDVKEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEG-----LDAEALEAHGLPRRRSSLAGLRRTSLPTSAAGAAAGGGGGGAPQEQEQEQRQPKKKNPEAIKRRRARARAAYLAELAAAGKYDAARPGPPR------TLSGGSPKARGRTTRGE--RRAGAGLWARRDPGMV 669
            A S +L+ LYA L+ A EEE  E  L AA  +LK APDE+EARAAKA A L+TGDYALAL+TALPAQ+ ERAYALYRLGRG EALA+LD S  ++E SFRHLRGQ LFKEGRYDEA +VF+ALV E    G  ED EL+TNLYAAFVAARRGQEAL+RFP   EL ++ YELAFN+GAA++D GDL+AAEARLREA   C R+G E+ M+P  +L+EGSGI+ ELAYVLA+QGRR E  EMV+TL  KA+KLSDPVVR  A+  AAAL+ GGR        L K++    EA  K++P Q +LL +N+ALML+HSG++DDA++ + A+K+E      K GGQA   WRVA++E+AIKMQ      ++  P  DL  L + V+  A       S DAE+ VGTA AQ LVYQG L EAA VLESI SLQGYPA  AT+AS+YA+LG +++  A FD+A++SFPP LPP F  KLL+G AA+R A+GD AGAA  L+ LL   + +K EL+SD RLR +A LV+A SWVD  EA  +A+ ELPAV  E G     +DA  LE  GLPRR+    G RRT  P    GAA GG      +E+E+E++    K  E  +R+RARAR  YLA+L A GKYDA+RPGPP         +  S   RG+  RG+     G+G  A RD  M+
Sbjct:    7 APSAELQDLYATLYHALEEEAFEEVLSAADAVLKSAPDELEARAAKAAAALHTGDYALALTTALPAQDFERAYALYRLGRGSEALAVLDGSPEQNEISFRHLRGQVLFKEGRYDEAIEVFSALVEEGRKAGDEEDVELLTNLYAAFVAARRGQEALSRFPLEAELRETSYELAFNSGAALVDTGDLSAAEARLREALNVCERLGLEEEMSPVDILNEGSGIRQELAYVLASQGRRREGLEMVSTLTKKANKLSDPVVRASAMITAAALK-GGRGQTKAQGGLNKLQAALEEAGPKMIPGQSILLRVNEALMLVHSGRLDDAEKAVAALKKEAASATAKGGGQAPGTWRVALVEVAIKMQ-----RAATDPAGDLQTLFQTVQAMARGSPSQDSVDAEQQVGTAWAQCLVYQGKLREAAQVLESIPSLQGYPAVVATVASIYAKLGLEEEVLATFDRAVSSFPPSLPPPFLAKLLRGTAALRRAKGDQAGAATALRALLDS-DKLKGELDSDVRLRTLADLVMAMSWVDGEEAGKIAEAELPAVEGEGGNEDEEVDASILEEAGLPRRQGG--GERRTLPP----GAAPGG-----QKEKEEEEQAKAAKKAEVRRRQRARARTVYLAKLTAEGKYDASRPGPPPDPERWIAKNQRSYNKRGKKGRGKFVGAQGSGNGAARDAAML 673
The following BLAST results are available for this feature:
BLAST of NO05G05150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854352.13.700e-16655.18signal recognition particle subunit SRP72 [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05150NO05G05150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05150.1NO05G05150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05150.1.cds1NO05G05150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05150.1 ID=NO05G05150.1|Name=NO05G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2115bp
ATGGCAACATCGGCAGGGGTAGCCAGCGCCGCGTCGGAGAAGCTTCGGCC
TTTATACGCAGCGCTGCACGAGGCCTTTGAGGAAGAAGACCATGAAGCTG
CCTTGGTCGCTGCCACCAAGCTCCTCAAAGTTGCACCTGATGAGGTCGAG
GCACGGGCAGCCAAGGCAGTGGCCGAGCTTTACACGGGTGACTATGCTCT
CGCCTTGTCCACGGCGTTGCCTGCCCAGGAATTGGAGCGAGCTTATGCCC
TTTATCGGTTGGGGCGAGGCGTCGAAGCCTTGGCCATTCTGGATGCTAGT
GTACTGAAGGATGAGGAGTCTTTCCGGCATCTGCGGGGTCAGGCACTATT
TAAGGAGGGGCGATACGACGAGGCAGCGGATGTCTTTGCAGCGTTGGTGT
CCGAGGCGGGCGCGAATGGAGTGGAAGACCCTGAGTTGATGACAAATCTA
TATGCTGCCTTTGTGGCGGCGCGACGGGGCCAGGAAGCCCTGGCACGCTT
TCCTTTTAGCGAAGAACTGATGGATTCGTGCTACGAGCTTGCGTTCAACA
CGGGGGCCGCCATGATCGATGCAGGGGATCTCACAGCGGCGGAAGCGAGG
CTGCGCGAGGCGCGGGCGACGTGTGTGCGTGTGGGGGAGGAGGATGGGAT
GACCCCGTCGGCATTATTGGACGAAGGGAGCGGGATCCAGATTGAGCTGG
CGTATGTCCTGGCGGCGCAGGGGAGGCGAGGAGAGGCGTTTGAGATGGTG
ACGACGTTGATGAACAAGGCAAGCAAGCTTTCGGACCCCGTGGTGCGTGT
CCTGGCGATAAACAATGCAGCGGCCTTGAGGGAGGGGGGAAGGCACCACA
AGGATATGAGCAGCAACCTGAAGAAGATGAAAGGGCCGTGGAGGGAGGCC
AAAAGCAAGCTACTGCCCATGCAACGCGTGCTCTTGACGTTGAACAAGGC
GCTGATGCTCATGCACTCTGGCAAGATCGACGATGCCAAGCAGGTCCTAG
AGGCGGTCAAGGAGGAGGGTGGGAAGGAGGGAGGGCAGGCTTGGTGGCGG
GTGGCCATGCTGGAAATCGCCATCAAAATGCAAGACGATAAATCGCGTAC
TTCGTCCTACTCCCCCAACGCAGATTTGGCGGCTTTGCTGGAACGCGTGC
GTACTGAAGCCCCCTCTGCCGATGCGGAGAAGACCGTTGGGACGGCCCTC
GCTCAAGTTCTCGTCTACCAAGGCGACCTCCACGAAGCGGCTTCTGTCCT
GGAATCGATCGCTTCTCTTCAGGGCTACCCTGCCCATGCTGCCACTTTGG
CATCGCTGTACGCCAGACTCGGCCAAAAGGATAAGAGTGCCGCTGTCTTT
GACAAAGCTCTGGCCTCCTTCCCTCCCTTTCTCCCTCCCTCTTTTAAAAT
CAAACTTCTACAAGGAGCGGCGGCGGTGCGAACGGCGCAAGGGGATCATG
CAGGAGCAGCCAATGTGTTGAAGCGCTTATTGTCGGGAGGGGAGGACGTC
AAGGAGGAACTGGAGAGTGACGCACGCCTCCGGGCAGTGGCTGCACTGGT
GGTGGCTACCTCGTGGGTGGATGTCGGAGAAGCCGAATTTCTCGCACAGA
AGGAGCTACCGGCTGTTCACCTGGAAGAAGGGCTTGATGCCGAGGCCTTG
GAGGCCCACGGCTTGCCCAGAAGGCGGTCGTCGCTGGCGGGGCTGCGGCG
GACCTCCCTCCCTACCTCTGCAGCAGGAGCAGCAGCAGGGGGAGGGGGAG
GAGGAGCACCTCAAGAGCAAGAGCAAGAGCAACGGCAGCCAAAGAAGAAG
AACCCAGAGGCCATCAAGCGGAGACGCGCCCGGGCCCGTGCCGCCTATCT
TGCCGAACTGGCAGCCGCAGGGAAATACGACGCTGCCCGCCCAGGACCCC
CCCGGACCCTGAGCGGTGGATCGCCAAAAGCCAGAGGTCGTACAACAAGA
GGGGAAAGAAGGGCAGGAGCCGGTTTGTGGGCGCGCAGGGATCCGGGGAT
GGTGCGCAGAAGGATACAGCGAGATTGGACGTGGCATCGCGGGTGGCAGC
GGAGAAGAAAAAGGGAGGGGGGGAGTTGGAGAAGGGGGGCGCGACGGGGG
GAGCTGGTGGGGTGA
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protein sequence of NO05G05150.1

>NO05G05150.1-protein ID=NO05G05150.1-protein|Name=NO05G05150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp
MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVE
ARAAKAVAELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDAS
VLKDEESFRHLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNL
YAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEAR
LREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMV
TTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREA
KSKLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWR
VAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTAL
AQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVF
DKALASFPPFLPPSFKIKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDV
KEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEAL
EAHGLPRRRSSLAGLRRTSLPTSAAGAAAGGGGGGAPQEQEQEQRQPKKK
NPEAIKRRRARARAAYLAELAAAGKYDAARPGPPRTLSGGSPKARGRTTR
GERRAGAGLWARRDPGMVRRRIQRDWTWHRGWQRRRKREGGSWRRGARRG
ELVG*
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mRNA from alignment at chr5:1353270..1355384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05150.1 ID=NO05G05150.1|Name=NO05G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2115bp|location=Sequence derived from alignment at chr5:1353270..1355384- (Nannochloropsis oceanica)
ATGGCAACATCGGCAGGGGTAGCCAGCGCCGCGTCGGAGAAGCTTCGGCC
TTTATACGCAGCGCTGCACGAGGCCTTTGAGGAAGAAGACCATGAAGCTG
CCTTGGTCGCTGCCACCAAGCTCCTCAAAGTTGCACCTGATGAGGTCGAG
GCACGGGCAGCCAAGGCAGTGGCCGAGCTTTACACGGGTGACTATGCTCT
CGCCTTGTCCACGGCGTTGCCTGCCCAGGAATTGGAGCGAGCTTATGCCC
TTTATCGGTTGGGGCGAGGCGTCGAAGCCTTGGCCATTCTGGATGCTAGT
GTACTGAAGGATGAGGAGTCTTTCCGGCATCTGCGGGGTCAGGCACTATT
TAAGGAGGGGCGATACGACGAGGCAGCGGATGTCTTTGCAGCGTTGGTGT
CCGAGGCGGGCGCGAATGGAGTGGAAGACCCTGAGTTGATGACAAATCTA
TATGCTGCCTTTGTGGCGGCGCGACGGGGCCAGGAAGCCCTGGCACGCTT
TCCTTTTAGCGAAGAACTGATGGATTCGTGCTACGAGCTTGCGTTCAACA
CGGGGGCCGCCATGATCGATGCAGGGGATCTCACAGCGGCGGAAGCGAGG
CTGCGCGAGGCGCGGGCGACGTGTGTGCGTGTGGGGGAGGAGGATGGGAT
GACCCCGTCGGCATTATTGGACGAAGGGAGCGGGATCCAGATTGAGCTGG
CGTATGTCCTGGCGGCGCAGGGGAGGCGAGGAGAGGCGTTTGAGATGGTG
ACGACGTTGATGAACAAGGCAAGCAAGCTTTCGGACCCCGTGGTGCGTGT
CCTGGCGATAAACAATGCAGCGGCCTTGAGGGAGGGGGGAAGGCACCACA
AGGATATGAGCAGCAACCTGAAGAAGATGAAAGGGCCGTGGAGGGAGGCC
AAAAGCAAGCTACTGCCCATGCAACGCGTGCTCTTGACGTTGAACAAGGC
GCTGATGCTCATGCACTCTGGCAAGATCGACGATGCCAAGCAGGTCCTAG
AGGCGGTCAAGGAGGAGGGTGGGAAGGAGGGAGGGCAGGCTTGGTGGCGG
GTGGCCATGCTGGAAATCGCCATCAAAATGCAAGACGATAAATCGCGTAC
TTCGTCCTACTCCCCCAACGCAGATTTGGCGGCTTTGCTGGAACGCGTGC
GTACTGAAGCCCCCTCTGCCGATGCGGAGAAGACCGTTGGGACGGCCCTC
GCTCAAGTTCTCGTCTACCAAGGCGACCTCCACGAAGCGGCTTCTGTCCT
GGAATCGATCGCTTCTCTTCAGGGCTACCCTGCCCATGCTGCCACTTTGG
CATCGCTGTACGCCAGACTCGGCCAAAAGGATAAGAGTGCCGCTGTCTTT
GACAAAGCTCTGGCCTCCTTCCCTCCCTTTCTCCCTCCCTCTTTTAAAAT
CAAACTTCTACAAGGAGCGGCGGCGGTGCGAACGGCGCAAGGGGATCATG
CAGGAGCAGCCAATGTGTTGAAGCGCTTATTGTCGGGAGGGGAGGACGTC
AAGGAGGAACTGGAGAGTGACGCACGCCTCCGGGCAGTGGCTGCACTGGT
GGTGGCTACCTCGTGGGTGGATGTCGGAGAAGCCGAATTTCTCGCACAGA
AGGAGCTACCGGCTGTTCACCTGGAAGAAGGGCTTGATGCCGAGGCCTTG
GAGGCCCACGGCTTGCCCAGAAGGCGGTCGTCGCTGGCGGGGCTGCGGCG
GACCTCCCTCCCTACCTCTGCAGCAGGAGCAGCAGCAGGGGGAGGGGGAG
GAGGAGCACCTCAAGAGCAAGAGCAAGAGCAACGGCAGCCAAAGAAGAAG
AACCCAGAGGCCATCAAGCGGAGACGCGCCCGGGCCCGTGCCGCCTATCT
TGCCGAACTGGCAGCCGCAGGGAAATACGACGCTGCCCGCCCAGGACCCC
CCCGGACCCTGAGCGGTGGATCGCCAAAAGCCAGAGGTCGTACAACAAGA
GGGGAAAGAAGGGCAGGAGCCGGTTTGTGGGCGCGCAGGGATCCGGGGAT
GGTGCGCAGAAGGATACAGCGAGATTGGACGTGGCATCGCGGGTGGCAGC
GGAGAAGAAAAAGGGAGGGGGGGAGTTGGAGAAGGGGGGCGCGACGGGGG
GAGCTGGTGGGGTGA
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Coding sequence (CDS) from alignment at chr5:1353270..1355384-

>NO05G05150.1 ID=NO05G05150.1|Name=NO05G05150.1|organism=Nannochloropsis oceanica|type=CDS|length=2115bp|location=Sequence derived from alignment at chr5:1353270..1355384- (Nannochloropsis oceanica)
ATGGCAACATCGGCAGGGGTAGCCAGCGCCGCGTCGGAGAAGCTTCGGCC
TTTATACGCAGCGCTGCACGAGGCCTTTGAGGAAGAAGACCATGAAGCTG
CCTTGGTCGCTGCCACCAAGCTCCTCAAAGTTGCACCTGATGAGGTCGAG
GCACGGGCAGCCAAGGCAGTGGCCGAGCTTTACACGGGTGACTATGCTCT
CGCCTTGTCCACGGCGTTGCCTGCCCAGGAATTGGAGCGAGCTTATGCCC
TTTATCGGTTGGGGCGAGGCGTCGAAGCCTTGGCCATTCTGGATGCTAGT
GTACTGAAGGATGAGGAGTCTTTCCGGCATCTGCGGGGTCAGGCACTATT
TAAGGAGGGGCGATACGACGAGGCAGCGGATGTCTTTGCAGCGTTGGTGT
CCGAGGCGGGCGCGAATGGAGTGGAAGACCCTGAGTTGATGACAAATCTA
TATGCTGCCTTTGTGGCGGCGCGACGGGGCCAGGAAGCCCTGGCACGCTT
TCCTTTTAGCGAAGAACTGATGGATTCGTGCTACGAGCTTGCGTTCAACA
CGGGGGCCGCCATGATCGATGCAGGGGATCTCACAGCGGCGGAAGCGAGG
CTGCGCGAGGCGCGGGCGACGTGTGTGCGTGTGGGGGAGGAGGATGGGAT
GACCCCGTCGGCATTATTGGACGAAGGGAGCGGGATCCAGATTGAGCTGG
CGTATGTCCTGGCGGCGCAGGGGAGGCGAGGAGAGGCGTTTGAGATGGTG
ACGACGTTGATGAACAAGGCAAGCAAGCTTTCGGACCCCGTGGTGCGTGT
CCTGGCGATAAACAATGCAGCGGCCTTGAGGGAGGGGGGAAGGCACCACA
AGGATATGAGCAGCAACCTGAAGAAGATGAAAGGGCCGTGGAGGGAGGCC
AAAAGCAAGCTACTGCCCATGCAACGCGTGCTCTTGACGTTGAACAAGGC
GCTGATGCTCATGCACTCTGGCAAGATCGACGATGCCAAGCAGGTCCTAG
AGGCGGTCAAGGAGGAGGGTGGGAAGGAGGGAGGGCAGGCTTGGTGGCGG
GTGGCCATGCTGGAAATCGCCATCAAAATGCAAGACGATAAATCGCGTAC
TTCGTCCTACTCCCCCAACGCAGATTTGGCGGCTTTGCTGGAACGCGTGC
GTACTGAAGCCCCCTCTGCCGATGCGGAGAAGACCGTTGGGACGGCCCTC
GCTCAAGTTCTCGTCTACCAAGGCGACCTCCACGAAGCGGCTTCTGTCCT
GGAATCGATCGCTTCTCTTCAGGGCTACCCTGCCCATGCTGCCACTTTGG
CATCGCTGTACGCCAGACTCGGCCAAAAGGATAAGAGTGCCGCTGTCTTT
GACAAAGCTCTGGCCTCCTTCCCTCCCTTTCTCCCTCCCTCTTTTAAAAT
CAAACTTCTACAAGGAGCGGCGGCGGTGCGAACGGCGCAAGGGGATCATG
CAGGAGCAGCCAATGTGTTGAAGCGCTTATTGTCGGGAGGGGAGGACGTC
AAGGAGGAACTGGAGAGTGACGCACGCCTCCGGGCAGTGGCTGCACTGGT
GGTGGCTACCTCGTGGGTGGATGTCGGAGAAGCCGAATTTCTCGCACAGA
AGGAGCTACCGGCTGTTCACCTGGAAGAAGGGCTTGATGCCGAGGCCTTG
GAGGCCCACGGCTTGCCCAGAAGGCGGTCGTCGCTGGCGGGGCTGCGGCG
GACCTCCCTCCCTACCTCTGCAGCAGGAGCAGCAGCAGGGGGAGGGGGAG
GAGGAGCACCTCAAGAGCAAGAGCAAGAGCAACGGCAGCCAAAGAAGAAG
AACCCAGAGGCCATCAAGCGGAGACGCGCCCGGGCCCGTGCCGCCTATCT
TGCCGAACTGGCAGCCGCAGGGAAATACGACGCTGCCCGCCCAGGACCCC
CCCGGACCCTGAGCGGTGGATCGCCAAAAGCCAGAGGTCGTACAACAAGA
GGGGAAAGAAGGGCAGGAGCCGGTTTGTGGGCGCGCAGGGATCCGGGGAT
GGTGCGCAGAAGGATACAGCGAGATTGGACGTGGCATCGCGGGTGGCAGC
GGAGAAGAAAAAGGGAGGGGGGGAGTTGGAGAAGGGGGGCGCGACGGGGG
GAGCTGGTGGGGTGA
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Synonyms
Publications