NO05G05100, NO05G05100 (gene) Nannochloropsis oceanica

Overview
NameNO05G05100
Unique NameNO05G05100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr5:1335375..1336043 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1335375..1336043 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G05100 vs. NCBI_GenBank
Match: EWM27889.1 (hypothetical protein Naga_100288g2 [Nannochloropsis gaditana])

HSP 1 Score: 121.7 bits (304), Expect = 2.900e-24
Identity = 128/234 (54.70%), Postives = 145/234 (61.97%), Query Frame = 0 
Query:    1 MAIVDDNPTGPTPTNPKKGKKKSP-----RTSAAPEKMPKPLSSVDSAVMEKXXXXXXXXXXXXXXXXXXXXXXAGLPYVAQMAADTTSMVLAESYLLTQRGYETLKSIDARVGVSSRLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYKYVDSGAKLVGK-------WGRSTLAKTRQKIVTRSTKGGKDAKTVSPVPLTGEEDVPIDLSKK 223
            MAIV D+ T P PTN KKG+KKS       T+   E  P  +S+ D                              LPYVA++A+DTTS VLAESYLLTQRG ETLK+ID+RVGV+ R   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           L+Y YV SGA+  GK       W RSTLAK R K+ TR  K G   KT SPVPLTGEE+VPIDL++K
Sbjct:    1 MAIV-DSTTNPAPTNTKKGQKKSAPAIPVETAPVGETAPDVVSNADK------QEETTSTVEATIAPEEDADLTMELPYVAKVASDTTSAVLAESYLLTQRGLETLKAIDSRVGVTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDTAESVSEKALEYPYVASGAEKTGKAVKFVERWSRSTLAKARSKVETRKNKKG---KTASPVPLTGEEEVPIDLARK 224
The following BLAST results are available for this feature:
BLAST of NO05G05100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27889.12.900e-2454.70hypothetical protein Naga_100288g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003334NSK003334Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05100.1NO05G05100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611468gene_10596Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100288g2gene2671Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05100.1NO05G05100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05100 ID=NO05G05100|Name=NO05G05100|organism=Nannochloropsis oceanica|type=gene|length=669bp
ATGGCCATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAA
GAAGGGCAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGC
CCAAACCCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAA
GAGACTTCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGA
TACGGATGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCT
CAATGGTATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACG
CTCAAATCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTT
GGACCAGAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCT
TGACTACGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAG
ATCAAGGACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGATTATAAGTA
CGTGGACTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTG
CCAAGACCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGAC
GCGAAGACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCAT
CGATCTGTCAAAGAAGTAA
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protein sequence of NO05G05100.1

>NO05G05100.1-protein ID=NO05G05100.1-protein|Name=NO05G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MAIVDDNPTGPTPTNPKKGKKKSPRTSAAPEKMPKPLSSVDSAVMEKEEE
ETSAQAEATIAPEEETDTDAGLPYVAQMAADTTSMVLAESYLLTQRGYET
LKSIDARVGVSSRLLALDQSVGVSKRVVSTAEALTTRAQALDTKYKVVSK
IKDTAEAVSERALDYKYVDSGAKLVGKWGRSTLAKTRQKIVTRSTKGGKD
AKTVSPVPLTGEEDVPIDLSKK*
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Synonyms
Publications