NO05G05100.1, NO05G05100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05100.1
Unique NameNO05G05100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr5:1335375..1336043 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1335375..1336043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05100.1 vs.
Match: EWM27889.1 (hypothetical protein Naga_100288g2 [Nannochloropsis gaditana])

HSP 1 Score: 222.2 bits (565), Expect = 1.600e-54
Identity = 138/234 (58.97%), Postives = 167/234 (71.37%), Query Frame = 0 
Query:    1 MAIVDDNPTGPTPTNPKKGKKKSP-----RTSAAPEKMPKPLSSVDSAVMEKEEEETSAQAEATIAPEEETDTDAGLPYVAQMAADTTSMVLAESYLLTQRGYETLKSIDARVGVSSRLLALDQSVGVSKRVVSTAEALTTRAQALDTKYKVVSKIKDTAEAVSERALDYKYVDSGAKLVGK-------WGRSTLAKTRQKIVTRSTKGGKDAKTVSPVPLTGEEDVPIDLSKK 223
            MAIVD   T P PTN KKG+KKS       T+   E  P  +S+ D      ++EET++  EATIAPEE+ D    LPYVA++A+DTTS VLAESYLLTQRG ETLK+ID+RVGV+ RL+ LD+S+GVSKRV++TAE L  R QALD KY V +KIKDTAE+VSE+AL+Y YV SGA+  GK       W RSTLAK R K+ TR  K G   KT SPVPLTGEE+VPIDL++K
Sbjct:    1 MAIVDST-TNPAPTNTKKGQKKSAPAIPVETAPVGETAPDVVSNAD------KQEETTSTVEATIAPEEDADLTMELPYVAKVASDTTSAVLAESYLLTQRGLETLKAIDSRVGVTKRLMDLDESMGVSKRVLATAEHLGARTQALDAKYHVTAKIKDTAESVSEKALEYPYVASGAEKTGKAVKFVERWSRSTLAKARSKVETRKNKKG---KTASPVPLTGEEEVPIDLARK 224
The following BLAST results are available for this feature:
BLAST of NO05G05100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27889.11.600e-5458.97hypothetical protein Naga_100288g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05100NO05G05100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05100.1NO05G05100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05100.1.cds1NO05G05100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05100.1 ID=NO05G05100.1|Name=NO05G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
ATGGCCATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAA
GAAGGGCAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGC
CCAAACCCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAA
GAGACTTCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGA
TACGGATGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCT
CAATGGTATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACG
CTCAAATCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTT
GGACCAGAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCT
TGACTACGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAG
ATCAAGGACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGATTATAAGTA
CGTGGACTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTG
CCAAGACCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGAC
GCGAAGACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCAT
CGATCTGTCAAAGAAGTAA
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protein sequence of NO05G05100.1

>NO05G05100.1-protein ID=NO05G05100.1-protein|Name=NO05G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MAIVDDNPTGPTPTNPKKGKKKSPRTSAAPEKMPKPLSSVDSAVMEKEEE
ETSAQAEATIAPEEETDTDAGLPYVAQMAADTTSMVLAESYLLTQRGYET
LKSIDARVGVSSRLLALDQSVGVSKRVVSTAEALTTRAQALDTKYKVVSK
IKDTAEAVSERALDYKYVDSGAKLVGKWGRSTLAKTRQKIVTRSTKGGKD
AKTVSPVPLTGEEDVPIDLSKK*
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mRNA from alignment at chr5:1335375..1336043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05100.1 ID=NO05G05100.1|Name=NO05G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=669bp|location=Sequence derived from alignment at chr5:1335375..1336043- (Nannochloropsis oceanica)
ATGGCCATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAA
GAAGGGCAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGC
CCAAACCCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAA
GAGACTTCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGA
TACGGATGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCT
CAATGGTATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACG
CTCAAATCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTT
GGACCAGAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCT
TGACTACGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAG
ATCAAGGACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGATTATAAGTA
CGTGGACTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTG
CCAAGACCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGAC
GCGAAGACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCAT
CGATCTGTCAAAGAAGTAA
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Coding sequence (CDS) from alignment at chr5:1335375..1336043-

>NO05G05100.1 ID=NO05G05100.1|Name=NO05G05100.1|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr5:1335375..1336043- (Nannochloropsis oceanica)
ATGGCCATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAA
GAAGGGCAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGC
CCAAACCCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAA
GAGACTTCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGA
TACGGATGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCT
CAATGGTATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACG
CTCAAATCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTT
GGACCAGAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCT
TGACTACGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAG
ATCAAGGACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGATTATAAGTA
CGTGGACTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTG
CCAAGACCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGAC
GCGAAGACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCAT
CGATCTGTCAAAGAAGTAA
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Synonyms
Publications