NO05G05030, NO05G05030 (gene) Nannochloropsis oceanica

Overview
NameNO05G05030
Unique NameNO05G05030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2054
Alignment locationchr5:1312176..1314229 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1312176..1314229 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
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BLAST of NO05G05030 vs. NCBI_GenBank
Match: XP_005854078.1 (hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526] >XP_005854487.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526] >EKU21875.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526] >EKU22282.1 hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.2 bits (243), Expect = 5.100e-17
Identity = 134/293 (45.73%), Postives = 155/293 (52.90%), Query Frame = 0 
Query:   54 MNMAASLDQSLGIFDYLPKAETSSLSNSMTDMGSGTSSVRGHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRKRIASSRAQGASDDKRQKKLELNRLASRESRXXXXXRLEELQRSVLILTHENHTLREQNELLRQMLITRLPSSELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAMGG------MGFVAAKGEMNEEESHRLGQELG-GEGGHDLGSSISSAAVDFFLPHPNMILGGLKESGDAVEGG--ERLRMVGAA 338
            MNMAASLDQSL IFDYLPKAE  SL+NSM+++ S  SSVRG+         XXXXXXXXXX                    XXXXXXXXXXXXXXXXX                      LELNRLA     XXXXX   ELQRSVL LTHENH LREQNELLRQMLI RLP+  +                              AAA+G        G +A +G    E+   L  + G GE  + LG S+SSAAVD F P+ N+++  +KE+   VEGG  E   +VGAA
Sbjct:    1 MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGN---------XXXXXXXXXXGTYVNSYGSSFPASASGTSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLELNRLAXXXXXXXXXXXXXELQRSVLYLTHENHQLREQNELLRQMLIGRLPTGTV------------------------------AAALGNGGEGNEKGLLAMRGPGEMEKEEVLATDHGEGESLNVLG-SMSSAAVDMFFPNTNLLM--MKEN---VEGGKEEEPSIVGAA 248
The following BLAST results are available for this feature:
BLAST of NO05G05030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854078.15.100e-1745.73hypothetical protein NGA_0219602 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003345NSK003345Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05030.1NO05G05030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585336gene_3320Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|352955gene_10604Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100197g4gene2666Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05030.1NO05G05030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05030 ID=NO05G05030|Name=NO05G05030|organism=Nannochloropsis oceanica|type=gene|length=2054bp
AGTATATCGATCATTCGCTTTTTAAGCACGTAAAATTGAGCAAATTTCAC
ACAAGAGTACTTGGTACAGTCCATGGCATTCAAAAAGTTCGACGTTGGGC
CGGCTCGCCCCAGCCGTTGGCTCAACGTCTCCCTGCGTCTTTCCGTGTCC
CCAAAAATACAACGTCCACCCACTGGAGCCTGTGTACTCCCGAATCATGT
GTCCCGAGCCTATAATGCCTTTGTAAAACAAGAAATCTATATCTAGAAGA
GTTAATGGTCTATCTGCTGGCTTATCAAGCAAGACAAGCGGTCTCCTTCC
TCTTCTAATTTTACTTTCAGAGCGAGGAGACTTTCTCTCCTGCCTTGGAC
CAGTAGATGCCTCTCGCTTTGGTAGCTCGCCTTACGGCCGCAGAATGGAT
CGATCGACAGACGTAGGGAAATAAAGGCATATTCAATCGTATATATCTTT
GCCTGCCTCAGCCATCACGCCTTTACAGGCGCTGACCAAGCCTTACGGAC
ATAAAAACTCTAAAAAATGCACCGGCTCGGACATCTCCCCTCGTACATTT
CCCTTCCGCTCTACTTCCGCTTGCTAACTATGGCTTGCTCTCCCATTCTT
ATGTCACAACCTGTAGGCCTCCTCACTCTCGACACATGCCCTTCCCCCCA
ACACACGCACACAGAGCCCTTCCCAATGAACATGGCTGCGTCGCTCGATC
AGAGCTTAGGGATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTG
TCGAATAGCATGACCGACATGGGGTCTGGGACCTCGTCGGTACGGGGCCA
CGAAGAGGAAGACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGT
CCTACAGCTCCTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACC
GCTGGCACCACGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGT
GTCAGTTGGTGCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCG
CCCAGGGAGCATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGT
TTAGCTTCGAGGgtacgtagacgtgtgcatgcagtttccgtacgcagtgt
ttggtggaggaagaaaaggaggcaggcatacttataagccgccccccaca
ctcaagcacgcattgcgctctctactttatttctcgtgtctcagtctttt
tcccctccctccctccctccctccctcccctttcttctccacagGAATCC
CGCAAGCGCAAAAAGCGACGTTTGGAAGAGCTGCAGCGATCTGTCCTCAT
CTTGACCCATGAAAATCACACCCTGCGTGAACAGAACGAGTTGCTGCGGC
AGATGCTCATCACCCGTTTGCCTTCGTCCGAGTTGGCAAGTGCCTTGGGT
GGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAGCGGTGACAGCAGCGAC
AGCAGGAGCAGCACCAATGGTTACAGCGGCAGCCATGGGAGGGATGGGGT
TTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGAGTCGCATAGGCTGGGG
CAAGAGCTGGGAGGGGAGGGAGGACATGACCTAGGGAGCTCAATATCCTC
GGCGGCAGTGGACTTCTTTTTGCCGCACCCGAACATGATTTTGGGGGGGC
TAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGAGAGGCTGCGGATGGTG
GGGGCGGCATAAGGAGGATAGGAGGGGTCGAAAGAGGATGGTTATGTGGT
GGAGGAGGAGGGAGATGAGAACGGGTAACTGACGTGGTGGAGGGGAAGGC
GAGTCGAGGTCGAAATGGCGCGAAGAGGGCAGGGTGGTCGAAAGAGGGAG
AGAGTAACCGAGGAAAGATGCACCACCTGAGCTCAAGGACAGGTGAACTG
TCCCTCTTCTTCTGCCTCCTGTATTGTGTTTTCCCCCGGCGTGTTTACGT
TACAATCAAAAGTATGGGCAGAAATATAAACCAAAAACGGAACGGGGCCT
TGACTCTCGGGAAGAAAGAAAGGCAAAGAAAGAGGCGGGAAACGGGAGGG
AGAG
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protein sequence of NO05G05030.1

>NO05G05030.1-protein ID=NO05G05030.1-protein|Name=NO05G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MHRLGHLPSYISLPLYFRLLTMACSPILMSQPVGLLTLDTCPSPQHTHTE
PFPMNMAASLDQSLGIFDYLPKAETSSLSNSMTDMGSGTSSVRGHEEEDD
EESGEGQGFSQSYSSSFPACSSSTTTDTAGTTATTTTTGTAAVNVSVGAV
AGTRKRIASSRAQGASDDKRQKKLELNRLASRESRKRKKRRLEELQRSVL
ILTHENHTLREQNELLRQMLITRLPSSELASALGGAAGGVGGGAGAVTAA
TAGAAPMVTAAAMGGMGFVAAKGEMNEEESHRLGQELGGEGGHDLGSSIS
SAAVDFFLPHPNMILGGLKESGDAVEGGERLRMVGAA*
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Synonyms
Publications