NO05G05030.1, NO05G05030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05030.1
Unique NameNO05G05030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1872
Alignment locationchr5:1312176..1314229 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1312176..1314229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05030.1 vs.
Match: XP_005854078.1 (hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526]; XP_005854487.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526]; EKU21875.1 hypothetical protein NGA_0219601 [Nannochloropsis gaditana CCMP526]; EKU22282.1 hypothetical protein NGA_0219602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 191.8 bits (486), Expect = 3.400e-45
Identity = 156/287 (54.36%), Postives = 191/287 (66.55%), Query Frame = 0 
Query:   54 MNMAASLDQSLGIFDYLPKAETSSLSNSMTDMGSGTSSVRGHEEEDDEESGEGQGFSQSYSSSFPACSSSTTTDTAGTTATTTTTGTAAVNVSVGAVAGTRKRIASSRAQGASDDKRQKKLELNRLASRESRKRKKRRLEELQRSVLILTHENHTLREQNELLRQMLITRLPSSELASALGGAAGGVGGGAGAVTAATAGAAPMVTAAAMGGMGFVAAKGEMNEEESHRLGQELG-GEGGHDLGSSISSAAVDFFLPHPNMILGGLKESGDAVEGG--ERLRMVGAA 338
            MNMAASLDQSL IFDYLPKAE  SL+NSM+++ S  SSVRG+E++DDE    G  +  SY SSFPA +S T+  TA + A+ ++T       +V +   TRKR +++ A G+SDDKRQKKLELNRLASRESRKRKKRRLEELQRSVL LTHENH LREQNELLRQMLI RLP+  +A+ALG   GG G   G +              AM G       GEM +EE   L  + G GE  + LG S+SSAAVD F P+ N+++  +KE+   VEGG  E   +VGAA
Sbjct:    1 MNMAASLDQSLTIFDYLPKAEPPSLNNSMSELASAVSSVRGNEDDDDEREENGT-YVNSYGSSFPASASGTSNLTATSAASKSST-------TVASSGATRKR-STANAHGSSDDKRQKKLELNRLASRESRKRKKRRLEELQRSVLYLTHENHQLREQNELLRQMLIGRLPTGTVAAALGN--GGEGNEKGLL--------------AMRG------PGEMEKEEV--LATDHGEGESLNVLG-SMSSAAVDMFFPNTNLLM--MKEN---VEGGKEEEPSIVGAA 248
The following BLAST results are available for this feature:
BLAST of NO05G05030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854078.13.400e-4554.36hypothetical protein NGA_0219602 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05030NO05G05030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05030.1NO05G05030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05030.1.cds1NO05G05030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05030.1.cds2NO05G05030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05030.1 ID=NO05G05030.1|Name=NO05G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
AGTATATCGATCATTCGCTTTTTAAGCACGTAAAATTGAGCAAATTTCAC
ACAAGAGTACTTGGTACAGTCCATGGCATTCAAAAAGTTCGACGTTGGGC
CGGCTCGCCCCAGCCGTTGGCTCAACGTCTCCCTGCGTCTTTCCGTGTCC
CCAAAAATACAACGTCCACCCACTGGAGCCTGTGTACTCCCGAATCATGT
GTCCCGAGCCTATAATGCCTTTGTAAAACAAGAAATCTATATCTAGAAGA
GTTAATGGTCTATCTGCTGGCTTATCAAGCAAGACAAGCGGTCTCCTTCC
TCTTCTAATTTTACTTTCAGAGCGAGGAGACTTTCTCTCCTGCCTTGGAC
CAGTAGATGCCTCTCGCTTTGGTAGCTCGCCTTACGGCCGCAGAATGGAT
CGATCGACAGACGTAGGGAAATAAAGGCATATTCAATCGTATATATCTTT
GCCTGCCTCAGCCATCACGCCTTTACAGGCGCTGACCAAGCCTTACGGAC
ATAAAAACTCTAAAAAATGCACCGGCTCGGACATCTCCCCTCGTACATTT
CCCTTCCGCTCTACTTCCGCTTGCTAACTATGGCTTGCTCTCCCATTCTT
ATGTCACAACCTGTAGGCCTCCTCACTCTCGACACATGCCCTTCCCCCCA
ACACACGCACACAGAGCCCTTCCCAATGAACATGGCTGCGTCGCTCGATC
AGAGCTTAGGGATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTG
TCGAATAGCATGACCGACATGGGGTCTGGGACCTCGTCGGTACGGGGCCA
CGAAGAGGAAGACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGT
CCTACAGCTCCTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACC
GCTGGCACCACGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGT
GTCAGTTGGTGCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCG
CCCAGGGAGCATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGT
TTAGCTTCGAGGGAATCCCGCAAGCGCAAAAAGCGACGTTTGGAAGAGCT
GCAGCGATCTGTCCTCATCTTGACCCATGAAAATCACACCCTGCGTGAAC
AGAACGAGTTGCTGCGGCAGATGCTCATCACCCGTTTGCCTTCGTCCGAG
TTGGCAAGTGCCTTGGGTGGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGG
AGCGGTGACAGCAGCGACAGCAGGAGCAGCACCAATGGTTACAGCGGCAG
CCATGGGAGGGATGGGGTTTGTGGCGGCGAAGGGAGAGATGAATGAAGAA
GAGTCGCATAGGCTGGGGCAAGAGCTGGGAGGGGAGGGAGGACATGACCT
AGGGAGCTCAATATCCTCGGCGGCAGTGGACTTCTTTTTGCCGCACCCGA
ACATGATTTTGGGGGGGCTAAAGGAAAGTGGTGACGCTGTGGAAGGAGGG
GAGAGGCTGCGGATGGTGGGGGCGGCATAAGGAGGATAGGAGGGGTCGAA
AGAGGATGGTTATGTGGTGGAGGAGGAGGGAGATGAGAACGGGTAACTGA
CGTGGTGGAGGGGAAGGCGAGTCGAGGTCGAAATGGCGCGAAGAGGGCAG
GGTGGTCGAAAGAGGGAGAGAGTAACCGAGGAAAGATGCACCACCTGAGC
TCAAGGACAGGTGAACTGTCCCTCTTCTTCTGCCTCCTGTATTGTGTTTT
CCCCCGGCGTGTTTACGTTACAATCAAAAGTATGGGCAGAAATATAAACC
AAAAACGGAACGGGGCCTTGACTCTCGGGAAGAAAGAAAGGCAAAGAAAG
AGGCGGGAAACGGGAGGGAGAG
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protein sequence of NO05G05030.1

>NO05G05030.1-protein ID=NO05G05030.1-protein|Name=NO05G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MHRLGHLPSYISLPLYFRLLTMACSPILMSQPVGLLTLDTCPSPQHTHTE
PFPMNMAASLDQSLGIFDYLPKAETSSLSNSMTDMGSGTSSVRGHEEEDD
EESGEGQGFSQSYSSSFPACSSSTTTDTAGTTATTTTTGTAAVNVSVGAV
AGTRKRIASSRAQGASDDKRQKKLELNRLASRESRKRKKRRLEELQRSVL
ILTHENHTLREQNELLRQMLITRLPSSELASALGGAAGGVGGGAGAVTAA
TAGAAPMVTAAAMGGMGFVAAKGEMNEEESHRLGQELGGEGGHDLGSSIS
SAAVDFFLPHPNMILGGLKESGDAVEGGERLRMVGAA*
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mRNA from alignment at chr5:1312176..1314229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05030.1 ID=NO05G05030.1|Name=NO05G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2054bp|location=Sequence derived from alignment at chr5:1312176..1314229- (Nannochloropsis oceanica)
AGTATATCGATCATTCGCTTTTTAAGCACGTAAAATTGAGCAAATTTCAC
ACAAGAGTACTTGGTACAGTCCATGGCATTCAAAAAGTTCGACGTTGGGC
CGGCTCGCCCCAGCCGTTGGCTCAACGTCTCCCTGCGTCTTTCCGTGTCC
CCAAAAATACAACGTCCACCCACTGGAGCCTGTGTACTCCCGAATCATGT
GTCCCGAGCCTATAATGCCTTTGTAAAACAAGAAATCTATATCTAGAAGA
GTTAATGGTCTATCTGCTGGCTTATCAAGCAAGACAAGCGGTCTCCTTCC
TCTTCTAATTTTACTTTCAGAGCGAGGAGACTTTCTCTCCTGCCTTGGAC
CAGTAGATGCCTCTCGCTTTGGTAGCTCGCCTTACGGCCGCAGAATGGAT
CGATCGACAGACGTAGGGAAATAAAGGCATATTCAATCGTATATATCTTT
GCCTGCCTCAGCCATCACGCCTTTACAGGCGCTGACCAAGCCTTACGGAC
ATAAAAACTCTAAAAAATGCACCGGCTCGGACATCTCCCCTCGTACATTT
CCCTTCCGCTCTACTTCCGCTTGCTAACTATGGCTTGCTCTCCCATTCTT
ATGTCACAACCTGTAGGCCTCCTCACTCTCGACACATGCCCTTCCCCCCA
ACACACGCACACAGAGCCCTTCCCAATGAACATGGCTGCGTCGCTCGATC
AGAGCTTAGGGATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTG
TCGAATAGCATGACCGACATGGGGTCTGGGACCTCGTCGGTACGGGGCCA
CGAAGAGGAAGACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGT
CCTACAGCTCCTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACC
GCTGGCACCACGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGT
GTCAGTTGGTGCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCG
CCCAGGGAGCATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGT
TTAGCTTCGAGGGTACGTAGACGTGTGCATGCAGTTTCCGTACGCAGTGT
TTGGTGGAGGAAGAAAAGGAGGCAGGCATACTTATAAGCCGCCCCCCACA
CTCAAGCACGCATTGCGCTCTCTACTTTATTTCTCGTGTCTCAGTCTTTT
TCCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTTCTTCTCCACAGGAATCC
CGCAAGCGCAAAAAGCGACGTTTGGAAGAGCTGCAGCGATCTGTCCTCAT
CTTGACCCATGAAAATCACACCCTGCGTGAACAGAACGAGTTGCTGCGGC
AGATGCTCATCACCCGTTTGCCTTCGTCCGAGTTGGCAAGTGCCTTGGGT
GGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAGCGGTGACAGCAGCGAC
AGCAGGAGCAGCACCAATGGTTACAGCGGCAGCCATGGGAGGGATGGGGT
TTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGAGTCGCATAGGCTGGGG
CAAGAGCTGGGAGGGGAGGGAGGACATGACCTAGGGAGCTCAATATCCTC
GGCGGCAGTGGACTTCTTTTTGCCGCACCCGAACATGATTTTGGGGGGGC
TAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGAGAGGCTGCGGATGGTG
GGGGCGGCATAAGGAGGATAGGAGGGGTCGAAAGAGGATGGTTATGTGGT
GGAGGAGGAGGGAGATGAGAACGGGTAACTGACGTGGTGGAGGGGAAGGC
GAGTCGAGGTCGAAATGGCGCGAAGAGGGCAGGGTGGTCGAAAGAGGGAG
AGAGTAACCGAGGAAAGATGCACCACCTGAGCTCAAGGACAGGTGAACTG
TCCCTCTTCTTCTGCCTCCTGTATTGTGTTTTCCCCCGGCGTGTTTACGT
TACAATCAAAAGTATGGGCAGAAATATAAACCAAAAACGGAACGGGGCCT
TGACTCTCGGGAAGAAAGAAAGGCAAAGAAAGAGGCGGGAAACGGGAGGG
AGAG
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Coding sequence (CDS) from alignment at chr5:1312176..1314229-

>NO05G05030.1 ID=NO05G05030.1|Name=NO05G05030.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr5:1312176..1314229- (Nannochloropsis oceanica)
ATGCACCGGCTCGGACATCTCCCCTCGTACATTTCCCTTCCGCTCTACTT
CCGCTTGCTAACTATGGCTTGCTCTCCCATTCTTATGTCACAACCTGTAG
GCCTCCTCACTCTCGACACATGCCCTTCCCCCCAACACACGCACACAGAG
CCCTTCCCAATGAACATGGCTGCGTCGCTCGATCAGAGCTTAGGGATCTT
CGATTATTTGCCCAAGGCGGAGACTTCCTCCCTGTCGAATAGCATGACCG
ACATGGGGTCTGGGACCTCGTCGGTACGGGGCCACGAAGAGGAAGACGAC
GAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGTCCTACAGCTCCTCCTT
TCCGGCCTGCTCTTCGAGCACCACAACCGACACCGCTGGCACCACGGCGA
CGACCACAACGACGGGTACGGCGGCAGTGAATGTGTCAGTTGGTGCCGTT
GCCGGCACACGGAAACGAATTGCCAGCAGTCGCGCCCAGGGAGCATCGGA
CGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGTTTAGCTTCGAGGGAAT
CCCGCAAGCGCAAAAAGCGACGTTTGGAAGAGCTGCAGCGATCTGTCCTC
ATCTTGACCCATGAAAATCACACCCTGCGTGAACAGAACGAGTTGCTGCG
GCAGATGCTCATCACCCGTTTGCCTTCGTCCGAGTTGGCAAGTGCCTTGG
GTGGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAGCGGTGACAGCAGCG
ACAGCAGGAGCAGCACCAATGGTTACAGCGGCAGCCATGGGAGGGATGGG
GTTTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGAGTCGCATAGGCTGG
GGCAAGAGCTGGGAGGGGAGGGAGGACATGACCTAGGGAGCTCAATATCC
TCGGCGGCAGTGGACTTCTTTTTGCCGCACCCGAACATGATTTTGGGGGG
GCTAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGAGAGGCTGCGGATGG
TGGGGGCGGCATAA
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Synonyms
Publications