NO05G05010, NO05G05010 (gene) Nannochloropsis oceanica

Overview
NameNO05G05010
Unique NameNO05G05010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1264
Alignment locationchr5:1307523..1308786 +

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Properties
Property NameValue
DescriptionEukaryotic protein of unknown function (DUF872)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1307523..1308786 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008590DUF872_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: EWM27896.1 (uncharacterized protein Naga_100197g8 [Nannochloropsis gaditana])

HSP 1 Score: 150.6 bits (379), Expect = 3.500e-33
Identity = 94/135 (69.63%), Postives = 104/135 (77.04%), Query Frame = 0 
Query:    1 MYSSFAPSSTNAATSTNAAQQGPQGFSPLVDPANFEID-SNGVRRSXXXXXXXXXXXXXXXXXXXXXXXXXXTILLCIGLSVRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            MYSS  PS    +++ + +QQGPQGFSPL +   FE+D  +  R           XXXXXXXXXXXXXXX  TILLC GL +RWHTDPKEKERGLAMIILGSLLFIPGSYASFQL+GAWAGWPGYSYAYIPSYDD
Sbjct:    1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFN--KFEMDRQSSARTVNPRRRPGRGXXXXXXXXXXXXXXXTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: XP_005854076.1 (hypothetical protein NGA_0219302, partial [Nannochloropsis gaditana CCMP526] >XP_005854484.1 hypothetical protein NGA_0219301, partial [Nannochloropsis gaditana CCMP526] >EKU21872.1 hypothetical protein NGA_0219301, partial [Nannochloropsis gaditana CCMP526] >EKU22280.1 hypothetical protein NGA_0219302, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.1 bits (331), Expect = 1.300e-27
Identity = 88/135 (65.19%), Postives = 93/135 (68.89%), Query Frame = 0 
Query:    1 MYSSFAPSSTNAATSTNAAQQGPQGFSPLVDPANFEID-SNGVRRSXXXXXXXXXXXXXXXXXXXXXXXXXXTILLCIGLSVRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            MYSS                   QGFSPL +   FE+D  +  R           XXXXXXXXXXXXXXX  TILLC GL +RWHTDPKEKERGLAMIILGSLLFIPGSYASFQL+GAWAGWPGYSYAYIPSYDD
Sbjct:   62 MYSSXXXXXXXXXXXXXXXXXXXQGFSPLFN--KFEMDRQSSARTVNPRRRPGRGXXXXXXXXXXXXXXXTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 194
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: XP_008608351.1 (hypothetical protein SDRG_04454 [Saprolegnia diclina VS20] >EQC38024.1 hypothetical protein SDRG_04454 [Saprolegnia diclina VS20])

HSP 1 Score: 69.7 bits (169), Expect = 7.800e-9
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:   90 KERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            + RG++  +LG + FIPGSYA+ QLYGA+ GWPGY YA +PSYDD
Sbjct:  173 ERRGMSFFVLGLITFIPGSYATTQLYGAYKGWPGYDYAQLPSYDD 217
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: XP_012206286.1 (hypothetical protein SPRG_11842 [Saprolegnia parasitica CBS 223.65] >KDO22995.1 hypothetical protein SPRG_11842 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 69.7 bits (169), Expect = 7.800e-9
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:   90 KERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            + RG++  +LG + FIPGSYA+ QLYGA+ GWPGY YA +PSYDD
Sbjct:   71 ERRGMSFFVLGLITFIPGSYATTQLYGAYKGWPGYDYAQLPSYDD 115
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: OQR88226.1 (hypothetical protein ACHHYP_07051 [Achlya hypogyna])

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-8
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0 
Query:   90 KERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            + RGL+  +LG + FIPGSYA+ QLYGA+ GWPGY Y+ +PSYDD
Sbjct:   71 ERRGLSFFVLGLITFIPGSYATTQLYGAYKGWPGYDYSQLPSYDD 115
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: CCA18542.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 68.2 bits (165), Expect = 2.300e-8
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 0 
Query:   89 EKERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            EK RGL++++LG + FIPGSYA+FQLYG++ GW GY Y  + SYDD
Sbjct:   40 EKRRGLSILMLGLIAFIPGSYATFQLYGSFRGWKGYQYDQVASYDD 85
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: GAY04770.1 (Hypothetical protein PINS_012592 [Pythium insidiosum])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:   89 EKERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            ++ RGL+  ILG + FIPGSYA+ QLYG++ GW GY Y+ IPSYDD
Sbjct:   37 DESRGLSFFILGLIAFIPGSYATVQLYGSYKGWKGYDYSQIPSYDD 82
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: GAX96146.1 (Hypothetical protein PINS_004031, partial [Pythium insidiosum])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:   89 EKERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            ++ RGL+  ILG + FIPGSYA+ QLYG++ GW GY Y+ IPSYDD
Sbjct:    1 DESRGLSFFILGLIAFIPGSYATVQLYGSYKGWXGYDYSQIPSYDD 46
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: XP_008875354.1 (hypothetical protein H310_10691 [Aphanomyces invadans] >ETV96043.1 hypothetical protein H310_10691 [Aphanomyces invadans])

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-7
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:   90 KERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            + +GL+  ILG + FIPGSYA+ QLYGA+ GW GY Y+ IPSYDD
Sbjct:   70 ERKGLSFFILGLITFIPGSYATTQLYGAYKGWHGYDYSQIPSYDD 114
[Close]
BLAST of NO05G05010 vs. NCBI_GenBank
Match: CCI46501.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-7
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:   89 EKERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            E+ RGL++ +LG + FIPGSYA+FQLYG++ GW GY Y  + SYDD
Sbjct:   40 EERRGLSIFMLGLIAFIPGSYATFQLYGSFRGWKGYQYDQVASYDD 85
The following BLAST results are available for this feature:
BLAST of NO05G05010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM27896.13.500e-3369.63uncharacterized protein Naga_100197g8 [Nannochloro... [more]
XP_005854076.11.300e-2765.19hypothetical protein NGA_0219302, partial [Nannoch... [more]
XP_008608351.17.800e-962.22hypothetical protein SDRG_04454 [Saprolegnia dicli... [more]
XP_012206286.17.800e-962.22hypothetical protein SPRG_11842 [Saprolegnia paras... [more]
OQR88226.11.000e-862.22hypothetical protein ACHHYP_07051 [Achlya hypogyna... [more]
CCA18542.12.300e-860.87conserved hypothetical protein [Albugo laibachii N... [more]
GAY04770.13.000e-860.87Hypothetical protein PINS_012592 [Pythium insidios... [more]
GAX96146.13.000e-860.87Hypothetical protein PINS_004031, partial [Pythium... [more]
XP_008875354.11.100e-762.22hypothetical protein H310_10691 [Aphanomyces invad... [more]
CCI46501.11.100e-758.70unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003347NSK003347Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05010.1NO05G05010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585329gene_3318Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100197g8gene2664Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05010.1NO05G05010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05010 ID=NO05G05010|Name=NO05G05010|organism=Nannochloropsis oceanica|type=gene|length=1264bp
CAGACAGCTGGCATAGCTACCATTTTCTCGTGAGATTCAAGCTTCCTGAG
CTGCTCCAGCCTCTCAGCCTCCGCTTGCTTCTTTTTGCTTCTTCGTCGCC
GGGTGTAAGTCGCCGCCGACACTCACAGCAGCCACCACCGCATCAAAACC
CGCTCTAAGCCACGTCGTCCCCAGACGATCCACCTGCTACTCCCTCTCCT
CAGCCTCCTAAGCCTGCCCCGCAACCGGAGCACTATCAAGCGACTGACCA
AGAAGACGGAGAGCGCCTCCCACCCGATACAGACCCTGCCGGAACAATGT
ACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGCACAAATGCC
GCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCCAGCCAATTT
TGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGACGACGACCTG
GCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTGCTGATGCTT
GTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCGATGGCACAC
GGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATATTGGGATCCT
TGCgtaagtttggaagaggaggaaggagggagggagggaggaagggagga
aggggtaagtgggcactttaacagacggtccggtttgatgatcgctgcgg
tgcgtttgaattgtatcccttgttttcttgagctcccatgataattcaaa
ttttgattgaaatgttctcaaagcagtgcataattccttcatccactaca
tagtattaaccgtttgaaaacgatacccacacaaacacgcagTGTTCATC
CCGGGGAGTTACGCGTCTTTTCAGTTGTACGGAGCTTGGGCAGGCTGGCC
GGGGTACTCGTATGCCTATATTCCCTCGTACGACGATTGAGTGTGGTAGA
GGACAATGTAGGGGAGTATATAGGAAGGAATGAAGGAAGTAAGGATAGAG
GGAGATGAGGAGTGAGGAAGGGGGGGAATTTTTGCGAGTGTTTCGGGAGG
GACGACGGACCGCCCAGAAAAAGTGTACGAGAGTTTCAACCATTGAAAAA
AGAGAAAACTATTTGGTTCTGATCGGGAGAAGCGATCGAAATTCGGCACG
GTGTATTTTAGGAAGGCAGGCCGAAAAGATGCCCGAAAGGCAAGGCAACA
TCGCTCTGCAAAAAGGAAAAAAGACTAAGGAAATATGGACGCGCGCCGTA
TTAAGGAGATAGGG
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protein sequence of NO05G05010.1

>NO05G05010.1-protein ID=NO05G05010.1-protein|Name=NO05G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MYSSFAPSSTNAATSTNAAQQGPQGFSPLVDPANFEIDSNGVRRSRQRRR
PGRGPPPPKTTLAAVLMLVVGTILLCIGLSVRWHTDPKEKERGLAMIILG
SLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD*
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Synonyms
Publications