NO05G05010.1, NO05G05010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05010.1
Unique NameNO05G05010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1025
Alignment locationchr5:1307523..1308786 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1307523..1308786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05010.1 vs.
Match: EWM27896.1 (uncharacterized protein Naga_100197g8 [Nannochloropsis gaditana])

HSP 1 Score: 204.9 bits (520), Expect = 1.600e-49
Identity = 102/135 (75.56%), Postives = 112/135 (82.96%), Query Frame = 0 
Query:    1 MYSSFAPSSTNAATSTNAAQQGPQGFSPLVDPANFEID-SNGVRRSRQRRRPGRGPPPPKTTLAAVLMLVVGTILLCIGLSVRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD 135
            MYSS  PS    +++ + +QQGPQGFSPL +   FE+D  +  R    RRRPGRGPPPPKTTLAAVLMLV GTILLC GL +RWHTDPKEKERGLAMIILGSLLFIPGSYASFQL+GAWAGWPGYSYAYIPSYDD
Sbjct:    1 MYSSSTPSVPPPSSTPHPSQQGPQGFSPLFN--KFEMDRQSSARTVNPRRRPGRGPPPPKTTLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133
The following BLAST results are available for this feature:
BLAST of NO05G05010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27896.11.600e-4975.56uncharacterized protein Naga_100197g8 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05010NO05G05010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05010.1NO05G05010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05010.1.cds1NO05G05010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05010.1.cds2NO05G05010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05010.1 ID=NO05G05010.1|Name=NO05G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
CAGACAGCTGGCATAGCTACCATTTTCTCGTGAGATTCAAGCTTCCTGAG
CTGCTCCAGCCTCTCAGCCTCCGCTTGCTTCTTTTTGCTTCTTCGTCGCC
GGGTGTAAGTCGCCGCCGACACTCACAGCAGCCACCACCGCATCAAAACC
CGCTCTAAGCCACGTCGTCCCCAGACGATCCACCTGCTACTCCCTCTCCT
CAGCCTCCTAAGCCTGCCCCGCAACCGGAGCACTATCAAGCGACTGACCA
AGAAGACGGAGAGCGCCTCCCACCCGATACAGACCCTGCCGGAACAATGT
ACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGCACAAATGCC
GCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCCAGCCAATTT
TGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGACGACGACCTG
GCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTGCTGATGCTT
GTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCGATGGCACAC
GGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATATTGGGATCCT
TGCTGTTCATCCCGGGGAGTTACGCGTCTTTTCAGTTGTACGGAGCTTGG
GCAGGCTGGCCGGGGTACTCGTATGCCTATATTCCCTCGTACGACGATTG
AGTGTGGTAGAGGACAATGTAGGGGAGTATATAGGAAGGAATGAAGGAAG
TAAGGATAGAGGGAGATGAGGAGTGAGGAAGGGGGGGAATTTTTGCGAGT
GTTTCGGGAGGGACGACGGACCGCCCAGAAAAAGTGTACGAGAGTTTCAA
CCATTGAAAAAAGAGAAAACTATTTGGTTCTGATCGGGAGAAGCGATCGA
AATTCGGCACGGTGTATTTTAGGAAGGCAGGCCGAAAAGATGCCCGAAAG
GCAAGGCAACATCGCTCTGCAAAAAGGAAAAAAGACTAAGGAAATATGGA
CGCGCGCCGTATTAAGGAGATAGGG
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protein sequence of NO05G05010.1

>NO05G05010.1-protein ID=NO05G05010.1-protein|Name=NO05G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MYSSFAPSSTNAATSTNAAQQGPQGFSPLVDPANFEIDSNGVRRSRQRRR
PGRGPPPPKTTLAAVLMLVVGTILLCIGLSVRWHTDPKEKERGLAMIILG
SLLFIPGSYASFQLYGAWAGWPGYSYAYIPSYDD*
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mRNA from alignment at chr5:1307523..1308786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05010.1 ID=NO05G05010.1|Name=NO05G05010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp|location=Sequence derived from alignment at chr5:1307523..1308786+ (Nannochloropsis oceanica)
CAGACAGCTGGCATAGCTACCATTTTCTCGTGAGATTCAAGCTTCCTGAG
CTGCTCCAGCCTCTCAGCCTCCGCTTGCTTCTTTTTGCTTCTTCGTCGCC
GGGTGTAAGTCGCCGCCGACACTCACAGCAGCCACCACCGCATCAAAACC
CGCTCTAAGCCACGTCGTCCCCAGACGATCCACCTGCTACTCCCTCTCCT
CAGCCTCCTAAGCCTGCCCCGCAACCGGAGCACTATCAAGCGACTGACCA
AGAAGACGGAGAGCGCCTCCCACCCGATACAGACCCTGCCGGAACAATGT
ACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGCACAAATGCC
GCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCCAGCCAATTT
TGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGACGACGACCTG
GCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTGCTGATGCTT
GTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCGATGGCACAC
GGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATATTGGGATCCT
TGCGTAAGTTTGGAAGAGGAGGAAGGAGGGAGGGAGGGAGGAAGGGAGGA
AGGGGTAAGTGGGCACTTTAACAGACGGTCCGGTTTGATGATCGCTGCGG
TGCGTTTGAATTGTATCCCTTGTTTTCTTGAGCTCCCATGATAATTCAAA
TTTTGATTGAAATGTTCTCAAAGCAGTGCATAATTCCTTCATCCACTACA
TAGTATTAACCGTTTGAAAACGATACCCACACAAACACGCAGTGTTCATC
CCGGGGAGTTACGCGTCTTTTCAGTTGTACGGAGCTTGGGCAGGCTGGCC
GGGGTACTCGTATGCCTATATTCCCTCGTACGACGATTGAGTGTGGTAGA
GGACAATGTAGGGGAGTATATAGGAAGGAATGAAGGAAGTAAGGATAGAG
GGAGATGAGGAGTGAGGAAGGGGGGGAATTTTTGCGAGTGTTTCGGGAGG
GACGACGGACCGCCCAGAAAAAGTGTACGAGAGTTTCAACCATTGAAAAA
AGAGAAAACTATTTGGTTCTGATCGGGAGAAGCGATCGAAATTCGGCACG
GTGTATTTTAGGAAGGCAGGCCGAAAAGATGCCCGAAAGGCAAGGCAACA
TCGCTCTGCAAAAAGGAAAAAAGACTAAGGAAATATGGACGCGCGCCGTA
TTAAGGAGATAGGG
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Coding sequence (CDS) from alignment at chr5:1307523..1308786+

>NO05G05010.1 ID=NO05G05010.1|Name=NO05G05010.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr5:1307523..1308786+ (Nannochloropsis oceanica)
ATGTACTCTTCCTTCGCCCCCTCTTCAACCAACGCCGCCACCAGCACAAA
TGCCGCTCAACAAGGCCCGCAAGGCTTCTCACCTTTGGTCGACCCAGCCA
ATTTTGAGATCGATAGCAATGGGGTGCGTCGGAGCAGGCAACGACGACGA
CCTGGCCGAGGGCCTCCTCCCCCCAAGACAACCCTCGCGGCAGTGCTGAT
GCTTGTGGTAGGCACGATATTATTGTGCATCGGTTTGAGCGTGCGATGGC
ACACGGACCCAAAGGAGAAGGAGCGGGGGCTGGCGATGATCATATTGGGA
TCCTTGCTGTTCATCCCGGGGAGTTACGCGTCTTTTCAGTTGTACGGAGC
TTGGGCAGGCTGGCCGGGGTACTCGTATGCCTATATTCCCTCGTACGACG
ATTGA
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Synonyms
Publications