NO05G04940, NO05G04940 (gene) Nannochloropsis oceanica

Overview
NameNO05G04940
Unique NameNO05G04940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2496
Alignment locationchr5:1281985..1284480 +

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Properties
Property NameValue
DescriptionLeucine-rich repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1281985..1284480 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
BLAST of NO05G04940 vs. NCBI_GenBank
Match: EWM27907.1 (Leucine-rich repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 390.6 bits (1002), Expect = 9.600e-105
Identity = 278/734 (37.87%), Postives = 377/734 (51.36%), Query Frame = 0
Query:    9 LALLPRGTDRLVASFLGAPQGLYCLACSHRHLGRFISFVERLDNLTPERLESLLNYFQC---------------GVVSLPYGDVESDADVEYDDEYDKRAAVDE-------KAPGTQKTNDETED-----------------------------------------------RLPLLRHL----------------------HFDTGQERSARLETIDFARRYG----GAHVV---TRPGDLALFPSRRLLHSLRILRLDGPLQAQAKRWFSDAVAAFRD---EFTREVGQSFQTGAISALEELSLTNCV-PELNAESAMDMANGIAQAPADVTRRLEILRLRGYALGGFESAVALVTAFTGMGSPPDGRWAGLRVLDLSDNLLGDIGLERLAESMAAGVFSPALEEIDLSLNRHIRRSQQSTIGPAGIQALVRALQTRRWDGWRGAGG--IRLKRLRLGGQYIGDDGVAELMAGW--KGELGCWDALEELKLNENRLTDESVRRIITVGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPVLLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARNPLTAEGMTVLVQCLGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSSLSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQIELAVADVRRKRDMAILAEELKQARGPRVVWDILTIN 637
            L  LP+GTD L  SFL   Q LYCLACSHR L +++ +V+RL+NL   RL++L  +F+                G       ++     + +  + +  + +           PGT   N  T +                                                +P +R +                      H   G  + A LE +DFA R G    G + V   T    + L  +R L   LR+LRLD P          D    +RD      +  G  F  GA++ LEEL L N     + A   + M   +A+ P    + +++LRL G+  G F  A+ALVTAFTGM +P DGRW  LR+LDL++NLLGDI LE LAES+  GVF PAL+E+DLSL++ +RR+QQ+TIGPAGI+ALV AL+       RG  G  I LKRL LGGQ IGD+GVAEL  GW  +G   CW ALEE+KLNEN +TDE    ++      V            + M  S +++    ++  K PVL RLVLERN I GG  L  +++   +     A      +KRLNLARNPLTAEG+   + CLG SL+ELKLGGN+N    N+AM R+LW   C +     +L+R         L D+RRLD+R+L +SR VVEE    L  G+   RLCQ+EL++AD+RR+RD+A++  +LK ARGPR+VWD+LTIN
Sbjct:   40 LTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPP--------LDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKA------RGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRG-FCCWKALEEVKLNENGITDEGFWHLMAGVTPCVE-----------EEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEW-KNLAR---------LWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTIN 737          
BLAST of NO05G04940 vs. NCBI_GenBank
Match: XP_005854727.1 (hypothetical protein NGA_0363900 [Nannochloropsis gaditana CCMP526] >EKU21630.1 hypothetical protein NGA_0363900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 390.2 bits (1001), Expect = 1.200e-104
Identity = 278/734 (37.87%), Postives = 377/734 (51.36%), Query Frame = 0
Query:    9 LALLPRGTDRLVASFLGAPQGLYCLACSHRHLGRFISFVERLDNLTPERLESLLNYFQC---------------GVVSLPYGDVESDADVEYDDEYDKRAAVDE-------KAPGTQKTNDETED-----------------------------------------------RLPLLRHL----------------------HFDTGQERSARLETIDFARRYG----GAHVV---TRPGDLALFPSRRLLHSLRILRLDGPLQAQAKRWFSDAVAAFRD---EFTREVGQSFQTGAISALEELSLTNCV-PELNAESAMDMANGIAQAPADVTRRLEILRLRGYALGGFESAVALVTAFTGMGSPPDGRWAGLRVLDLSDNLLGDIGLERLAESMAAGVFSPALEEIDLSLNRHIRRSQQSTIGPAGIQALVRALQTRRWDGWRGAGG--IRLKRLRLGGQYIGDDGVAELMAGW--KGELGCWDALEELKLNENRLTDESVRRIITVGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPVLLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARNPLTAEGMTVLVQCLGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSSLSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQIELAVADVRRKRDMAILAEELKQARGPRVVWDILTIN 637
            L  LP+GTD L  SFL   Q LYCLACSHR L +++ +V+RL+NL   RL++L  +F+                G       ++     + +  + +  + +           PGT   N  T +                                                +P +R +                      H   G  + A LE +DFA R G    G + V   T    + L  +R L   LR+LRLD P          D    +RD      +  G  F  GA++ LEEL L N     + A   + M   +A+ P    + +++LRL G+  G F  A+ALVTAFTGM +P DGRW  LR+LDL++NLLGDI LE LAES+  GVF PAL+E+DLSL++ +RR+QQ+TIGPAGI+ALV AL+       RG  G  I LKRL LGGQ IGD+GVAEL  GW  +G   CW ALEE+KLNEN +TDE    ++      V            + M  S +++    ++  K PVL RLVLERN I GG  L  +++   +     A      +KRLNLARNPLTAEG+   + CLG SL+ELKLGGN+N    N+AM R+LW   C +     +L+R         L D+RRLD+R+L +SR VVEE    L  G+   RLCQ+EL++AD+RR+RD+A++  +LK ARGPR+VWD+LTIN
Sbjct:   40 LTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPP--------LDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHLALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKA------RGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRG-FCCWKALEEVKLNENGITDEGFWHLMAGVTPCVE-----------EEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEW-KNLAR---------LWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTIN 737          
BLAST of NO05G04940 vs. NCBI_GenBank
Match: EWM23095.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 2.900e-8
Identity = 105/372 (28.23%), Postives = 148/372 (39.78%), Query Frame = 0
Query:  275 GRWAGLRVLDLSDNLLGDIGLERLAESMAAGVFSPALEEIDLSLNRHIRR-----------SQQSTIGPAGIQALVRALQTRRWDGWRG-----------AGGIRLKRLRLGGQYIGDDGVAELMAGWKGELGCWDALEELKLNENRLTDESVRRIIT-VGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPVLLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARN----PLTA------EGMTVLVQC----LGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSSLSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQIELAVADVRR 610
            GR+  L+VLDL DN LG  G+  L   +      P LE +DLS+    R             Q+  +GPAG   L  AL  +   G RG            GG RL+RL LGG  +G +GV  L+   +   G   AL EL L +N L DE    +   +               D    G   K+ ++  +Q    P L +L+L  N I G       L     FH  P P   SS+  LNL  N    PL A      EG   L  C    LG SL+ L L  N                F   +P+ +++L R     P      +  L++    + RT  EE +  + G K+     Q+ + +A+++R
Sbjct:  451 GRFEKLKVLDLRDNALGCKGVSALCVGLHREGSMPCLESLDLSMGGRKRELGAGQGDGGEGRQRGGMGPAGCTVLCAALLRQ---GGRGKVXXXXXXXXXVGGCRLRRLGLGGHLMGVEGVEVLLKVLRA--GACPALRELDLTDNALGDEGACLVAEWLRGWERGREEWGGGAQDRPWEGKEGKE-EQEDVQVTTPPPLRQLLLGHNGIAGALFAVHPL-----FHTPPCPG-TSSLAALNLEGNLLASPLPAHAQGEDEGHHDLRPCLQAFLGPSLRHLSLAHN---------------PFIGSTPASAAALGRLVREYP-----GIEHLNLTGCGLGRTREEESVGVMTGKKVAKVGFQLPVMLAEIQR 790          
The following BLAST results are available for this feature:
BLAST of NO05G04940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM27907.19.600e-10537.87Leucine-rich repeat protein [Nannochloropsis gadit... [more]
XP_005854727.11.200e-10437.87hypothetical protein NGA_0363900 [Nannochloropsis ... [more]
EWM23095.12.900e-828.23Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003354NSK003354Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04940.1NO05G04940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585294gene_3312Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100338g5gene2659Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04940.1NO05G04940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04940 ID=NO05G04940|Name=NO05G04940|organism=Nannochloropsis oceanica|type=gene|length=2496bp
ATGCTCATCGAAGGTGGAGGCCTTCTTGCATTGCTGCCCCGGGGGACAGA
CCGCCTGGTCGCCAGCTTTTTGGGTGCACCTCAAGGCTTGTACTGCCTCG
CCTGTAGTCACCGTCACCTGGGCAGGTTTATCTCGTTTGTGGAACGTTTA
GACAACCTCACGCCAGAAAGGCTCGAGAGTCTGCTGAATTATTTCCAGTG
CGGCGTTGTGTCACTGCCCTATGGCGATGTCGAAAGTGACGCTGATGTCG
AGTATGACGATGAGTACGACAAAAGAGCTGCCGTCGACGAGAAGGCTCCC
GGAACTCAGAAAACTAACGACGAGACGGAAGACCGCCTGCCGTTGCTAAG
GCATCTCCATTTTGATACAGGgtatgaatgggcagtacgcggcggcagag
aggagagtggcgataagcagattcagtcacacacacgagcgacgctcttt
gggctcgctttaaagcagcagcactcattccggggcggtcaccttttcgt
cccgaatttagaaagtcttgacctctcggagacattcatgagcgatgccg
acctcgactgcgtaataaatgggctagggcaaacacgccggctctggaaa
ttgtttttgccaggattccccacgaacggattacggtcaacatcgcgtgc
ttttgttggggaaagggctattctcgccagacttccgtatctgcgcgaag
tgggaaaccgacacgggacaggcacggaacaccttataatgatgaatcgc
tctacatcgatacctcatatcctcagCCAGGAGAGAAGTGCTAGACTGGA
GACAATAGATTTTGCAAGACGCTATGGGGGAGCTCATGTTGTAACGAGAC
CGGGCGATTTAGCCTTGTTTCCGAGCAGGCGACTTCTTCATTCTTTGCGG
gtaaataacatacgatatttagttgtggttggggcaacggcgccatcatc
ttcctacccttctctctgtttaccgtaaataatttactttcgcttcgtca
aacgctcaccgtctaaccttcatgccggttcttaatttctctgtaactat
ctccttcagATCCTGCGCTTGGATGGTCCCCTCCAGGCGCAGGCGAAACG
TTGGTTCTCTGACGCAGTCGCCGCCTTCCGAGATGAGTTCACTCGCGAAG
TAGGTCAAAGTTTTCAGACAGGTGCGATTTCTGCTTTGGAGGAGCTTTCG
CTGACGAATTGTGTGCCTGAATTGAACGCGGAAAGTGCAATGGATATGGC
AAACGGAATAGCTCAAGCCCCTGCCGATGTCACGCGTAGGTTGGAGATCC
TGCGATTGCGAGGATACGCTTTGGGAGGCTTTGAGAGCGCGGTAGCCTTG
GTAACAGCGTTCACGGGTATGGGATCCCCGCCGGACGGGCGGTGGGCTGG
CTTACGGGTCTTGGATTTGAGTGATAATCTGTTGGGTGACATTGGGTTGG
AACGATTGGCTGAAAGTATGGCAGCAGGCGTTTTCAGCCCAGCGCTTGAA
GAGATCGATCTCTCCCTCAACCGACATATTCGAAGGTCACAGCAATCGAC
GATCGGCCCGGCGGGGATCCAAGCATTGGTACGTGCGTTACAGACACGAA
GGTGGGACGGCTGGAGGGGTGCTGGCGGGATAAGATTGAAACGATTGCGA
CTTGGCGGACAGTACATTGGTGATGATGGAGTGGCGGAGCTGATGGCCGG
GTGGAAGGGAGAGCTGGGCTGTTGGGATGCCTTGGAGGAGCTCAAGTTGA
ACGAAAACAGACTTACGGATGAGAGTGTGCGAAGAATAATAACCGTGGGA
ATGATTGCAGTACCTTCACTTCCTCTTGACAACAATATGGACGATGGAGA
CCGCATGGGTGCCAGCACTAAACAATCGAAGAAGCGGAAAATTCAGCCAC
AGAAACAGCCTGTGCTTCTTCGTTTGGTTCTGGAGCGAAATGAGATCCGC
GGCGGCCATGTCCTACGGACTCAGTTACAGCACATCTTGTCATTCCACAG
ACAGCCTGCCCCGTCATGGGACTCCTCGATAAAACGACTGAATTTGGCAA
GAAATCCACTGACGGCAGAAGGGATGACAGTTCTCGTTCAGTGCCTTGGC
TCGAGCCTCCAGGAACTCAAGCTTGGGGGAAACTCGAATGGGATTGGCGA
TAATGATGCCATGGCCCGGAAGCTGTGGGCGTTTTCCTGTGTCTCGCCCT
CTCTTTCTTCCTCTTTATCGCGGTCGTCGGTGTCAGCACCGTGCTCGCCC
CTTGCCGACCTACGACGTCTGGATATTCGCCGTTTGCCCATTTCTCGCAC
AGTGGTGGAGGAGTTTATGATTAGGCTCCATGGCGGGAAAATATTCCCGC
GGCTGTGTCAGATCGAGTTGGCCGTAGCAGACGTGCGACGAAAACGGGAC
ATGGCGATTTTGGCAGAGGAACTCAAACAGGCTCGAGGTCCGCGTGTGGT
GTGGGACATACTGACGATTAACAAGACATTTCCTCCAACGGGATAG
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protein sequence of NO05G04940.1

>NO05G04940.1-protein ID=NO05G04940.1-protein|Name=NO05G04940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MLIEGGGLLALLPRGTDRLVASFLGAPQGLYCLACSHRHLGRFISFVERL
DNLTPERLESLLNYFQCGVVSLPYGDVESDADVEYDDEYDKRAAVDEKAP
GTQKTNDETEDRLPLLRHLHFDTGQERSARLETIDFARRYGGAHVVTRPG
DLALFPSRRLLHSLRILRLDGPLQAQAKRWFSDAVAAFRDEFTREVGQSF
QTGAISALEELSLTNCVPELNAESAMDMANGIAQAPADVTRRLEILRLRG
YALGGFESAVALVTAFTGMGSPPDGRWAGLRVLDLSDNLLGDIGLERLAE
SMAAGVFSPALEEIDLSLNRHIRRSQQSTIGPAGIQALVRALQTRRWDGW
RGAGGIRLKRLRLGGQYIGDDGVAELMAGWKGELGCWDALEELKLNENRL
TDESVRRIITVGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPV
LLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARNPLT
AEGMTVLVQCLGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSS
LSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQI
ELAVADVRRKRDMAILAEELKQARGPRVVWDILTINKTFPPTG*
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Synonyms
Publications