NO05G04940.1, NO05G04940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04940.1
Unique NameNO05G04940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1932
Alignment locationchr5:1281985..1284480 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1281985..1284480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04940.1 vs.
Match: EWM27907.1 (Leucine-rich repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 2.700e-99
Identity = 244/542 (45.02%), Postives = 321/542 (59.23%), Query Frame = 0 
Query:  108 ETEDRLPLLRHLHFDTGQERSARLETIDFARRYG----GAHVV---TRPGDLALFPSRRLLHSLRILRLDGPLQAQAKRWFSDAVAAFRD---EFTREVGQSFQTGAISALEELSLTNCVPE-LNAESAMDMANGIAQAPADVTRRLEILRLRGYALGGFESAVALVTAFTGMGSPPDGRWAGLRVLDLSDNLLGDIGLERLAESMAAGVFSPALEEIDLSLNRHIRRSQQSTIGPAGIQALVRALQTRRWDGWRGAGGIRLKRLRLGGQYIGDDGVAELMAGW--KGELGCWDALEELKLNENRLTDESVRRIITVGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPVLLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARNPLTAEGMTVLVQCLGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSSLSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQIELAVADVRRKRDMAILAEELKQARGPRVVWDILTIN 637
            E  D+L L  H H   G  + A LE +DFA R G    G + V   T    + L  +R L   LR+LRLD P          D    +RD      +  G  F  GA++ LEEL L N     + A   + M   +A+ P    + +++LRL G+  G F  A+ALVTAFTGM +P DGRW  LR+LDL++NLLGDI LE LAES+  GVF PAL+E+DLSL++ +RR+QQ+TIGPAGI+ALV AL+ R   G      I LKRL LGGQ IGD+GVAEL  GW  +G   CW ALEE+KLNEN +TDE    ++      V            + M  S +++    ++  K PVL RLVLERN I GG  L  +++   +     A      +KRLNLARNPLTAEG+   + CLG SL+ELKLGGN+N    N+AM R+LW   C +     +L+R         L D+RRLD+R+L +SR VVEE    L  G+   RLCQ+EL++AD+RR+RD+A++  +LK ARGPR+VWD+LTIN
Sbjct:  232 EIIDKLRLGEHHH--EGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPPL--------DFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEE----ICLKRLHLGGQEIGDEGVAELARGWCLRG-FCCWKALEEVKLNENGITDEGFWHLMAGVTPCVE-----------EEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEW-KNLAR---------LWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTIN 737
The following BLAST results are available for this feature:
BLAST of NO05G04940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27907.12.700e-9945.02Leucine-rich repeat protein [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04940NO05G04940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04940.1NO05G04940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04940.1.cds1NO05G04940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04940.1.cds2NO05G04940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04940.1.cds3NO05G04940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04940.1 ID=NO05G04940.1|Name=NO05G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
ATGCTCATCGAAGGTGGAGGCCTTCTTGCATTGCTGCCCCGGGGGACAGA
CCGCCTGGTCGCCAGCTTTTTGGGTGCACCTCAAGGCTTGTACTGCCTCG
CCTGTAGTCACCGTCACCTGGGCAGGTTTATCTCGTTTGTGGAACGTTTA
GACAACCTCACGCCAGAAAGGCTCGAGAGTCTGCTGAATTATTTCCAGTG
CGGCGTTGTGTCACTGCCCTATGGCGATGTCGAAAGTGACGCTGATGTCG
AGTATGACGATGAGTACGACAAAAGAGCTGCCGTCGACGAGAAGGCTCCC
GGAACTCAGAAAACTAACGACGAGACGGAAGACCGCCTGCCGTTGCTAAG
GCATCTCCATTTTGATACAGGCCAGGAGAGAAGTGCTAGACTGGAGACAA
TAGATTTTGCAAGACGCTATGGGGGAGCTCATGTTGTAACGAGACCGGGC
GATTTAGCCTTGTTTCCGAGCAGGCGACTTCTTCATTCTTTGCGGATCCT
GCGCTTGGATGGTCCCCTCCAGGCGCAGGCGAAACGTTGGTTCTCTGACG
CAGTCGCCGCCTTCCGAGATGAGTTCACTCGCGAAGTAGGTCAAAGTTTT
CAGACAGGTGCGATTTCTGCTTTGGAGGAGCTTTCGCTGACGAATTGTGT
GCCTGAATTGAACGCGGAAAGTGCAATGGATATGGCAAACGGAATAGCTC
AAGCCCCTGCCGATGTCACGCGTAGGTTGGAGATCCTGCGATTGCGAGGA
TACGCTTTGGGAGGCTTTGAGAGCGCGGTAGCCTTGGTAACAGCGTTCAC
GGGTATGGGATCCCCGCCGGACGGGCGGTGGGCTGGCTTACGGGTCTTGG
ATTTGAGTGATAATCTGTTGGGTGACATTGGGTTGGAACGATTGGCTGAA
AGTATGGCAGCAGGCGTTTTCAGCCCAGCGCTTGAAGAGATCGATCTCTC
CCTCAACCGACATATTCGAAGGTCACAGCAATCGACGATCGGCCCGGCGG
GGATCCAAGCATTGGTACGTGCGTTACAGACACGAAGGTGGGACGGCTGG
AGGGGTGCTGGCGGGATAAGATTGAAACGATTGCGACTTGGCGGACAGTA
CATTGGTGATGATGGAGTGGCGGAGCTGATGGCCGGGTGGAAGGGAGAGC
TGGGCTGTTGGGATGCCTTGGAGGAGCTCAAGTTGAACGAAAACAGACTT
ACGGATGAGAGTGTGCGAAGAATAATAACCGTGGGAATGATTGCAGTACC
TTCACTTCCTCTTGACAACAATATGGACGATGGAGACCGCATGGGTGCCA
GCACTAAACAATCGAAGAAGCGGAAAATTCAGCCACAGAAACAGCCTGTG
CTTCTTCGTTTGGTTCTGGAGCGAAATGAGATCCGCGGCGGCCATGTCCT
ACGGACTCAGTTACAGCACATCTTGTCATTCCACAGACAGCCTGCCCCGT
CATGGGACTCCTCGATAAAACGACTGAATTTGGCAAGAAATCCACTGACG
GCAGAAGGGATGACAGTTCTCGTTCAGTGCCTTGGCTCGAGCCTCCAGGA
ACTCAAGCTTGGGGGAAACTCGAATGGGATTGGCGATAATGATGCCATGG
CCCGGAAGCTGTGGGCGTTTTCCTGTGTCTCGCCCTCTCTTTCTTCCTCT
TTATCGCGGTCGTCGGTGTCAGCACCGTGCTCGCCCCTTGCCGACCTACG
ACGTCTGGATATTCGCCGTTTGCCCATTTCTCGCACAGTGGTGGAGGAGT
TTATGATTAGGCTCCATGGCGGGAAAATATTCCCGCGGCTGTGTCAGATC
GAGTTGGCCGTAGCAGACGTGCGACGAAAACGGGACATGGCGATTTTGGC
AGAGGAACTCAAACAGGCTCGAGGTCCGCGTGTGGTGTGGGACATACTGA
CGATTAACAAGACATTTCCTCCAACGGGATAG
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protein sequence of NO05G04940.1

>NO05G04940.1-protein ID=NO05G04940.1-protein|Name=NO05G04940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MLIEGGGLLALLPRGTDRLVASFLGAPQGLYCLACSHRHLGRFISFVERL
DNLTPERLESLLNYFQCGVVSLPYGDVESDADVEYDDEYDKRAAVDEKAP
GTQKTNDETEDRLPLLRHLHFDTGQERSARLETIDFARRYGGAHVVTRPG
DLALFPSRRLLHSLRILRLDGPLQAQAKRWFSDAVAAFRDEFTREVGQSF
QTGAISALEELSLTNCVPELNAESAMDMANGIAQAPADVTRRLEILRLRG
YALGGFESAVALVTAFTGMGSPPDGRWAGLRVLDLSDNLLGDIGLERLAE
SMAAGVFSPALEEIDLSLNRHIRRSQQSTIGPAGIQALVRALQTRRWDGW
RGAGGIRLKRLRLGGQYIGDDGVAELMAGWKGELGCWDALEELKLNENRL
TDESVRRIITVGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPV
LLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARNPLT
AEGMTVLVQCLGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSS
LSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQI
ELAVADVRRKRDMAILAEELKQARGPRVVWDILTINKTFPPTG*
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mRNA from alignment at chr5:1281985..1284480+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04940.1 ID=NO05G04940.1|Name=NO05G04940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp|location=Sequence derived from alignment at chr5:1281985..1284480+ (Nannochloropsis oceanica)
ATGCTCATCGAAGGTGGAGGCCTTCTTGCATTGCTGCCCCGGGGGACAGA
CCGCCTGGTCGCCAGCTTTTTGGGTGCACCTCAAGGCTTGTACTGCCTCG
CCTGTAGTCACCGTCACCTGGGCAGGTTTATCTCGTTTGTGGAACGTTTA
GACAACCTCACGCCAGAAAGGCTCGAGAGTCTGCTGAATTATTTCCAGTG
CGGCGTTGTGTCACTGCCCTATGGCGATGTCGAAAGTGACGCTGATGTCG
AGTATGACGATGAGTACGACAAAAGAGCTGCCGTCGACGAGAAGGCTCCC
GGAACTCAGAAAACTAACGACGAGACGGAAGACCGCCTGCCGTTGCTAAG
GCATCTCCATTTTGATACAGGGTATGAATGGGCAGTACGCGGCGGCAGAG
AGGAGAGTGGCGATAAGCAGATTCAGTCACACACACGAGCGACGCTCTTT
GGGCTCGCTTTAAAGCAGCAGCACTCATTCCGGGGCGGTCACCTTTTCGT
CCCGAATTTAGAAAGTCTTGACCTCTCGGAGACATTCATGAGCGATGCCG
ACCTCGACTGCGTAATAAATGGGCTAGGGCAAACACGCCGGCTCTGGAAA
TTGTTTTTGCCAGGATTCCCCACGAACGGATTACGGTCAACATCGCGTGC
TTTTGTTGGGGAAAGGGCTATTCTCGCCAGACTTCCGTATCTGCGCGAAG
TGGGAAACCGACACGGGACAGGCACGGAACACCTTATAATGATGAATCGC
TCTACATCGATACCTCATATCCTCAGCCAGGAGAGAAGTGCTAGACTGGA
GACAATAGATTTTGCAAGACGCTATGGGGGAGCTCATGTTGTAACGAGAC
CGGGCGATTTAGCCTTGTTTCCGAGCAGGCGACTTCTTCATTCTTTGCGG
GTAAATAACATACGATATTTAGTTGTGGTTGGGGCAACGGCGCCATCATC
TTCCTACCCTTCTCTCTGTTTACCGTAAATAATTTACTTTCGCTTCGTCA
AACGCTCACCGTCTAACCTTCATGCCGGTTCTTAATTTCTCTGTAACTAT
CTCCTTCAGATCCTGCGCTTGGATGGTCCCCTCCAGGCGCAGGCGAAACG
TTGGTTCTCTGACGCAGTCGCCGCCTTCCGAGATGAGTTCACTCGCGAAG
TAGGTCAAAGTTTTCAGACAGGTGCGATTTCTGCTTTGGAGGAGCTTTCG
CTGACGAATTGTGTGCCTGAATTGAACGCGGAAAGTGCAATGGATATGGC
AAACGGAATAGCTCAAGCCCCTGCCGATGTCACGCGTAGGTTGGAGATCC
TGCGATTGCGAGGATACGCTTTGGGAGGCTTTGAGAGCGCGGTAGCCTTG
GTAACAGCGTTCACGGGTATGGGATCCCCGCCGGACGGGCGGTGGGCTGG
CTTACGGGTCTTGGATTTGAGTGATAATCTGTTGGGTGACATTGGGTTGG
AACGATTGGCTGAAAGTATGGCAGCAGGCGTTTTCAGCCCAGCGCTTGAA
GAGATCGATCTCTCCCTCAACCGACATATTCGAAGGTCACAGCAATCGAC
GATCGGCCCGGCGGGGATCCAAGCATTGGTACGTGCGTTACAGACACGAA
GGTGGGACGGCTGGAGGGGTGCTGGCGGGATAAGATTGAAACGATTGCGA
CTTGGCGGACAGTACATTGGTGATGATGGAGTGGCGGAGCTGATGGCCGG
GTGGAAGGGAGAGCTGGGCTGTTGGGATGCCTTGGAGGAGCTCAAGTTGA
ACGAAAACAGACTTACGGATGAGAGTGTGCGAAGAATAATAACCGTGGGA
ATGATTGCAGTACCTTCACTTCCTCTTGACAACAATATGGACGATGGAGA
CCGCATGGGTGCCAGCACTAAACAATCGAAGAAGCGGAAAATTCAGCCAC
AGAAACAGCCTGTGCTTCTTCGTTTGGTTCTGGAGCGAAATGAGATCCGC
GGCGGCCATGTCCTACGGACTCAGTTACAGCACATCTTGTCATTCCACAG
ACAGCCTGCCCCGTCATGGGACTCCTCGATAAAACGACTGAATTTGGCAA
GAAATCCACTGACGGCAGAAGGGATGACAGTTCTCGTTCAGTGCCTTGGC
TCGAGCCTCCAGGAACTCAAGCTTGGGGGAAACTCGAATGGGATTGGCGA
TAATGATGCCATGGCCCGGAAGCTGTGGGCGTTTTCCTGTGTCTCGCCCT
CTCTTTCTTCCTCTTTATCGCGGTCGTCGGTGTCAGCACCGTGCTCGCCC
CTTGCCGACCTACGACGTCTGGATATTCGCCGTTTGCCCATTTCTCGCAC
AGTGGTGGAGGAGTTTATGATTAGGCTCCATGGCGGGAAAATATTCCCGC
GGCTGTGTCAGATCGAGTTGGCCGTAGCAGACGTGCGACGAAAACGGGAC
ATGGCGATTTTGGCAGAGGAACTCAAACAGGCTCGAGGTCCGCGTGTGGT
GTGGGACATACTGACGATTAACAAGACATTTCCTCCAACGGGATAG
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Coding sequence (CDS) from alignment at chr5:1281985..1284480+

>NO05G04940.1 ID=NO05G04940.1|Name=NO05G04940.1|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at chr5:1281985..1284480+ (Nannochloropsis oceanica)
ATGCTCATCGAAGGTGGAGGCCTTCTTGCATTGCTGCCCCGGGGGACAGA
CCGCCTGGTCGCCAGCTTTTTGGGTGCACCTCAAGGCTTGTACTGCCTCG
CCTGTAGTCACCGTCACCTGGGCAGGTTTATCTCGTTTGTGGAACGTTTA
GACAACCTCACGCCAGAAAGGCTCGAGAGTCTGCTGAATTATTTCCAGTG
CGGCGTTGTGTCACTGCCCTATGGCGATGTCGAAAGTGACGCTGATGTCG
AGTATGACGATGAGTACGACAAAAGAGCTGCCGTCGACGAGAAGGCTCCC
GGAACTCAGAAAACTAACGACGAGACGGAAGACCGCCTGCCGTTGCTAAG
GCATCTCCATTTTGATACAGGCCAGGAGAGAAGTGCTAGACTGGAGACAA
TAGATTTTGCAAGACGCTATGGGGGAGCTCATGTTGTAACGAGACCGGGC
GATTTAGCCTTGTTTCCGAGCAGGCGACTTCTTCATTCTTTGCGGATCCT
GCGCTTGGATGGTCCCCTCCAGGCGCAGGCGAAACGTTGGTTCTCTGACG
CAGTCGCCGCCTTCCGAGATGAGTTCACTCGCGAAGTAGGTCAAAGTTTT
CAGACAGGTGCGATTTCTGCTTTGGAGGAGCTTTCGCTGACGAATTGTGT
GCCTGAATTGAACGCGGAAAGTGCAATGGATATGGCAAACGGAATAGCTC
AAGCCCCTGCCGATGTCACGCGTAGGTTGGAGATCCTGCGATTGCGAGGA
TACGCTTTGGGAGGCTTTGAGAGCGCGGTAGCCTTGGTAACAGCGTTCAC
GGGTATGGGATCCCCGCCGGACGGGCGGTGGGCTGGCTTACGGGTCTTGG
ATTTGAGTGATAATCTGTTGGGTGACATTGGGTTGGAACGATTGGCTGAA
AGTATGGCAGCAGGCGTTTTCAGCCCAGCGCTTGAAGAGATCGATCTCTC
CCTCAACCGACATATTCGAAGGTCACAGCAATCGACGATCGGCCCGGCGG
GGATCCAAGCATTGGTACGTGCGTTACAGACACGAAGGTGGGACGGCTGG
AGGGGTGCTGGCGGGATAAGATTGAAACGATTGCGACTTGGCGGACAGTA
CATTGGTGATGATGGAGTGGCGGAGCTGATGGCCGGGTGGAAGGGAGAGC
TGGGCTGTTGGGATGCCTTGGAGGAGCTCAAGTTGAACGAAAACAGACTT
ACGGATGAGAGTGTGCGAAGAATAATAACCGTGGGAATGATTGCAGTACC
TTCACTTCCTCTTGACAACAATATGGACGATGGAGACCGCATGGGTGCCA
GCACTAAACAATCGAAGAAGCGGAAAATTCAGCCACAGAAACAGCCTGTG
CTTCTTCGTTTGGTTCTGGAGCGAAATGAGATCCGCGGCGGCCATGTCCT
ACGGACTCAGTTACAGCACATCTTGTCATTCCACAGACAGCCTGCCCCGT
CATGGGACTCCTCGATAAAACGACTGAATTTGGCAAGAAATCCACTGACG
GCAGAAGGGATGACAGTTCTCGTTCAGTGCCTTGGCTCGAGCCTCCAGGA
ACTCAAGCTTGGGGGAAACTCGAATGGGATTGGCGATAATGATGCCATGG
CCCGGAAGCTGTGGGCGTTTTCCTGTGTCTCGCCCTCTCTTTCTTCCTCT
TTATCGCGGTCGTCGGTGTCAGCACCGTGCTCGCCCCTTGCCGACCTACG
ACGTCTGGATATTCGCCGTTTGCCCATTTCTCGCACAGTGGTGGAGGAGT
TTATGATTAGGCTCCATGGCGGGAAAATATTCCCGCGGCTGTGTCAGATC
GAGTTGGCCGTAGCAGACGTGCGACGAAAACGGGACATGGCGATTTTGGC
AGAGGAACTCAAACAGGCTCGAGGTCCGCGTGTGGTGTGGGACATACTGA
CGATTAACAAGACATTTCCTCCAACGGGATAG
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Synonyms
Publications