NO05G04880, NO05G04880 (gene) Nannochloropsis oceanica

Overview
NameNO05G04880
Unique NameNO05G04880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr5:1264761..1265963 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1264761..1265963 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G04880 vs. NCBI_GenBank
Match: EWM27913.1 (hypothetical protein Naga_100267g3 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 2.000e-44
Identity = 98/136 (72.06%), Postives = 116/136 (85.29%), Query Frame = 0 
Query:    1 MFKQLFFLAAFLAVLAQAFVPQTALPKKHLSFSSSAAATAACRPQRQQMNVPFVALMAKMTAEEEEEARKLTFQNNQRSRKGRTTDEDGKSNIWAYDRKEEVEVGKGNGIIIVGVLIAIFLGALTFLPTIQFPSYD 137
            MFKQLFF AAFLA+LAQAFVP+ +LP+  L  S+SA A  + R Q   +N+P +AL+ KMTAEEEEEAR+LTFQNN RSRKGRTTDEDGKSNIWAY+RKEEVEV KGNGI++VG++IAIFLGAL FLP I+FP+YD
Sbjct:    1 MFKQLFFAAAFLALLAQAFVPKASLPRNQLPLSTSAGAAMSRRTQLPLINLPSLALLDKMTAEEEEEARQLTFQNNLRSRKGRTTDEDGKSNIWAYERKEEVEVAKGNGIVVVGLMIAIFLGALVFLPQIEFPNYD 136
The following BLAST results are available for this feature:
BLAST of NO05G04880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27913.12.000e-4472.06hypothetical protein Naga_100267g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003361NSK003361Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04880.1NO05G04880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585269gene_3305Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100267g3gene2652Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04880.1NO05G04880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04880 ID=NO05G04880|Name=NO05G04880|organism=Nannochloropsis oceanica|type=gene|length=1203bp
CCACGTTGTCGTCTTTTCTGACGGGTCAATCCTTCTTTTCTCGAGTGTGA
CTCCTCCTTCGTCGCTCTTGGTGTGTACGTAAGACTTTTTCTCAACATAC
ATATCCTCTAGGCATCAGTGCCCAATCAAGGTGCAGCACACCGCAACCCG
ATCGCGCCCACAAGTGTAGCGCTTTTGGACCACGTCGAAAGCAACACACG
GCAAGTGCGATGCGGGGCAACGTTTGGGGCTCCTTTTCCCATGCTTGCAG
CGCTATTCCCATGGGCTGGCCATCCCACTGGCACCTCTACCACGGCAAGC
TGAACGCCGATGCAGAGGCCTATGCCTCCGCGATCTGGCGCACGATGCCC
TCTTTCTCGCCTTGAGAGCCGATCCATAATGACCGCATAAAAGGAAGGTG
TTCATTTTCCCCTTTTACGACCTCTAACAGTTCTCTTCCACACCCCTGCA
CTCAACTATTCCCACCACAGATCAACTATGTTCAAGCAACTCTTTTTCTT
GGCCGCTTTCCTGGCTGTGCTAGCCCAGGCGTTCGTGCCCCAGACTGCCC
TCCCCAAGAAGCATCTCTCCTTTTCATCCTCCGCTGCTGCTACCGCCGCT
TGCCGGCCGCAACGACAACAAATGAATGTGCCCTTTGTGGCGCTTATGGC
CAAGATGACTGCTGAGGAGGAGGAAGAGGCCCGCAAGCTAACCTTTCAGA
ACAACCAACGCTCCCGCAAAGGACGCACCACGGACGAGGACGGCAAGTCC
AACATCTGGGCATACGACCGAAAGGAAGAGGTGGAGGTTGGCAAGGGCAA
CGGTATCATCATTGTGGGTGTGCTGATCGCCATTTTCCTTGGTGCCTTGA
CCTTCCTGCCCACCATCCAATTCCCCAGCTACGATTAAGCGTCAGACCAC
ACATGACTCTGACAAGACAGATGTGACAGTGTGCTCTCTTTGTGTAGTGC
GTGATTTCCATGTTCCCCCGCTTTCCTCCTCCTCCTTCTCCTTTTCCTAC
TTGTCATGCTCATTTGAGATTTTAAATTAAGCCCGAAAGCAACGCTGTCA
CCGCCGGGTAGTGGTGGAACAAGATGAGACAGGAGCTCCATACCTCGAAA
GTAGATCAAAAAACTACCAAAAATAGGGAACTTGTGTCTTGTCAGCAACG
AACGAAGAAAGAGATGAAAGATGAAGAAGAAACGTTTACCGCGCATCTAG
ATA
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protein sequence of NO05G04880.1

>NO05G04880.1-protein ID=NO05G04880.1-protein|Name=NO05G04880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFKQLFFLAAFLAVLAQAFVPQTALPKKHLSFSSSAAATAACRPQRQQMN
VPFVALMAKMTAEEEEEARKLTFQNNQRSRKGRTTDEDGKSNIWAYDRKE
EVEVGKGNGIIIVGVLIAIFLGALTFLPTIQFPSYD*
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Synonyms
Publications