NO05G04880.1, NO05G04880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04880.1
Unique NameNO05G04880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr5:1264761..1265963 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1264761..1265963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04880.1 vs.
Match: EWM27913.1 (hypothetical protein Naga_100267g3 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 2.000e-44
Identity = 98/136 (72.06%), Postives = 116/136 (85.29%), Query Frame = 0 
Query:    1 MFKQLFFLAAFLAVLAQAFVPQTALPKKHLSFSSSAAATAACRPQRQQMNVPFVALMAKMTAEEEEEARKLTFQNNQRSRKGRTTDEDGKSNIWAYDRKEEVEVGKGNGIIIVGVLIAIFLGALTFLPTIQFPSYD 137
            MFKQLFF AAFLA+LAQAFVP+ +LP+  L  S+SA A  + R Q   +N+P +AL+ KMTAEEEEEAR+LTFQNN RSRKGRTTDEDGKSNIWAY+RKEEVEV KGNGI++VG++IAIFLGAL FLP I+FP+YD
Sbjct:    1 MFKQLFFAAAFLALLAQAFVPKASLPRNQLPLSTSAGAAMSRRTQLPLINLPSLALLDKMTAEEEEEARQLTFQNNLRSRKGRTTDEDGKSNIWAYERKEEVEVAKGNGIVVVGLMIAIFLGALVFLPQIEFPNYD 136
The following BLAST results are available for this feature:
BLAST of NO05G04880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27913.12.000e-4472.06hypothetical protein Naga_100267g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04880NO05G04880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04880.1NO05G04880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04880.1.cds1NO05G04880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04880.1 ID=NO05G04880.1|Name=NO05G04880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
CCACGTTGTCGTCTTTTCTGACGGGTCAATCCTTCTTTTCTCGAGTGTGA
CTCCTCCTTCGTCGCTCTTGGTGTGTACGTAAGACTTTTTCTCAACATAC
ATATCCTCTAGGCATCAGTGCCCAATCAAGGTGCAGCACACCGCAACCCG
ATCGCGCCCACAAGTGTAGCGCTTTTGGACCACGTCGAAAGCAACACACG
GCAAGTGCGATGCGGGGCAACGTTTGGGGCTCCTTTTCCCATGCTTGCAG
CGCTATTCCCATGGGCTGGCCATCCCACTGGCACCTCTACCACGGCAAGC
TGAACGCCGATGCAGAGGCCTATGCCTCCGCGATCTGGCGCACGATGCCC
TCTTTCTCGCCTTGAGAGCCGATCCATAATGACCGCATAAAAGGAAGGTG
TTCATTTTCCCCTTTTACGACCTCTAACAGTTCTCTTCCACACCCCTGCA
CTCAACTATTCCCACCACAGATCAACTATGTTCAAGCAACTCTTTTTCTT
GGCCGCTTTCCTGGCTGTGCTAGCCCAGGCGTTCGTGCCCCAGACTGCCC
TCCCCAAGAAGCATCTCTCCTTTTCATCCTCCGCTGCTGCTACCGCCGCT
TGCCGGCCGCAACGACAACAAATGAATGTGCCCTTTGTGGCGCTTATGGC
CAAGATGACTGCTGAGGAGGAGGAAGAGGCCCGCAAGCTAACCTTTCAGA
ACAACCAACGCTCCCGCAAAGGACGCACCACGGACGAGGACGGCAAGTCC
AACATCTGGGCATACGACCGAAAGGAAGAGGTGGAGGTTGGCAAGGGCAA
CGGTATCATCATTGTGGGTGTGCTGATCGCCATTTTCCTTGGTGCCTTGA
CCTTCCTGCCCACCATCCAATTCCCCAGCTACGATTAAGCGTCAGACCAC
ACATGACTCTGACAAGACAGATGTGACAGTGTGCTCTCTTTGTGTAGTGC
GTGATTTCCATGTTCCCCCGCTTTCCTCCTCCTCCTTCTCCTTTTCCTAC
TTGTCATGCTCATTTGAGATTTTAAATTAAGCCCGAAAGCAACGCTGTCA
CCGCCGGGTAGTGGTGGAACAAGATGAGACAGGAGCTCCATACCTCGAAA
GTAGATCAAAAAACTACCAAAAATAGGGAACTTGTGTCTTGTCAGCAACG
AACGAAGAAAGAGATGAAAGATGAAGAAGAAACGTTTACCGCGCATCTAG
ATA
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protein sequence of NO05G04880.1

>NO05G04880.1-protein ID=NO05G04880.1-protein|Name=NO05G04880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFKQLFFLAAFLAVLAQAFVPQTALPKKHLSFSSSAAATAACRPQRQQMN
VPFVALMAKMTAEEEEEARKLTFQNNQRSRKGRTTDEDGKSNIWAYDRKE
EVEVGKGNGIIIVGVLIAIFLGALTFLPTIQFPSYD*
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mRNA from alignment at chr5:1264761..1265963+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04880.1 ID=NO05G04880.1|Name=NO05G04880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp|location=Sequence derived from alignment at chr5:1264761..1265963+ (Nannochloropsis oceanica)
CCACGTTGTCGTCTTTTCTGACGGGTCAATCCTTCTTTTCTCGAGTGTGA
CTCCTCCTTCGTCGCTCTTGGTGTGTACGTAAGACTTTTTCTCAACATAC
ATATCCTCTAGGCATCAGTGCCCAATCAAGGTGCAGCACACCGCAACCCG
ATCGCGCCCACAAGTGTAGCGCTTTTGGACCACGTCGAAAGCAACACACG
GCAAGTGCGATGCGGGGCAACGTTTGGGGCTCCTTTTCCCATGCTTGCAG
CGCTATTCCCATGGGCTGGCCATCCCACTGGCACCTCTACCACGGCAAGC
TGAACGCCGATGCAGAGGCCTATGCCTCCGCGATCTGGCGCACGATGCCC
TCTTTCTCGCCTTGAGAGCCGATCCATAATGACCGCATAAAAGGAAGGTG
TTCATTTTCCCCTTTTACGACCTCTAACAGTTCTCTTCCACACCCCTGCA
CTCAACTATTCCCACCACAGATCAACTATGTTCAAGCAACTCTTTTTCTT
GGCCGCTTTCCTGGCTGTGCTAGCCCAGGCGTTCGTGCCCCAGACTGCCC
TCCCCAAGAAGCATCTCTCCTTTTCATCCTCCGCTGCTGCTACCGCCGCT
TGCCGGCCGCAACGACAACAAATGAATGTGCCCTTTGTGGCGCTTATGGC
CAAGATGACTGCTGAGGAGGAGGAAGAGGCCCGCAAGCTAACCTTTCAGA
ACAACCAACGCTCCCGCAAAGGACGCACCACGGACGAGGACGGCAAGTCC
AACATCTGGGCATACGACCGAAAGGAAGAGGTGGAGGTTGGCAAGGGCAA
CGGTATCATCATTGTGGGTGTGCTGATCGCCATTTTCCTTGGTGCCTTGA
CCTTCCTGCCCACCATCCAATTCCCCAGCTACGATTAAGCGTCAGACCAC
ACATGACTCTGACAAGACAGATGTGACAGTGTGCTCTCTTTGTGTAGTGC
GTGATTTCCATGTTCCCCCGCTTTCCTCCTCCTCCTTCTCCTTTTCCTAC
TTGTCATGCTCATTTGAGATTTTAAATTAAGCCCGAAAGCAACGCTGTCA
CCGCCGGGTAGTGGTGGAACAAGATGAGACAGGAGCTCCATACCTCGAAA
GTAGATCAAAAAACTACCAAAAATAGGGAACTTGTGTCTTGTCAGCAACG
AACGAAGAAAGAGATGAAAGATGAAGAAGAAACGTTTACCGCGCATCTAG
ATA
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Coding sequence (CDS) from alignment at chr5:1264761..1265963+

>NO05G04880.1 ID=NO05G04880.1|Name=NO05G04880.1|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at chr5:1264761..1265963+ (Nannochloropsis oceanica)
ATGTTCAAGCAACTCTTTTTCTTGGCCGCTTTCCTGGCTGTGCTAGCCCA
GGCGTTCGTGCCCCAGACTGCCCTCCCCAAGAAGCATCTCTCCTTTTCAT
CCTCCGCTGCTGCTACCGCCGCTTGCCGGCCGCAACGACAACAAATGAAT
GTGCCCTTTGTGGCGCTTATGGCCAAGATGACTGCTGAGGAGGAGGAAGA
GGCCCGCAAGCTAACCTTTCAGAACAACCAACGCTCCCGCAAAGGACGCA
CCACGGACGAGGACGGCAAGTCCAACATCTGGGCATACGACCGAAAGGAA
GAGGTGGAGGTTGGCAAGGGCAACGGTATCATCATTGTGGGTGTGCTGAT
CGCCATTTTCCTTGGTGCCTTGACCTTCCTGCCCACCATCCAATTCCCCA
GCTACGATTAA
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Synonyms
Publications