NO05G04870, NO05G04870 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04870 vs. NCBI_GenBank
Match: EWM27910.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana]) HSP 1 Score: 416.0 bits (1068), Expect = 1.100e-112 Identity = 209/300 (69.67%), Postives = 242/300 (80.67%), Query Frame = 0 Query: 3 VVHDHAPYFLLLXXXLITNKSIYAFVLPTSRPGHHCFPSTTLLCAIPISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRIIGIESAMKMPKEEVCELQVVVTPGFNVQEYINMEKIQRPGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNALKKESARM 303 +V H + +L L+ + S AF S P F S +L A SKLP +G SFY +VRKQA +AVQAGL+ G EQ+EIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKG+KLWVIFPDGKEATLA +RWGGVNFRI+GI++AMK K+E CELQ+ VTPGFNVQEYIN+EK++RPGVPM+VVNGNLDRIRGGYYPR+FYPGLYNVKERML++FEPV+YLKPAQGGFI+R++PEEWQQVL YYD + R D + +KEVL KVV T+ ERPAYNDVVNALKKES M Sbjct: 13 IVAFHKTWLSILVLFLLYSTSTNAF-YGLSGPRRSQFVS--VLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGD---KGRKEVLTKVVATSEERPAYNDVVNALKKESLSM 306
BLAST of NO05G04870 vs. NCBI_GenBank
Match: CBJ27978.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 231.9 bits (590), Expect = 2.900e-57 Identity = 114/248 (45.97%), Postives = 165/248 (66.53%), Query Frame = 0 Query: 50 ISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPK-GSKLWVIFPDGKEATLANERWGGVNFRIIGIESAMKMPKEEVCELQVVVTPGFNVQEYINMEKIQRPGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNALK 297 ++K+P+ G Y V+KQ +A Q + G++ +E+EFP G++D+SLGE LD +R + RE R F+ + G LW++FPD EA LA +GG FR++GI SA+K K+E C++Q+VV PGF+V E+I ++ + RP VPMV++NGNLD++RGGYYPR+F+PGLYN KER LK FE V+YLK GG+I+RR PE+WQ V ++ +R R E KV+ +T +RP YN V ++ Sbjct: 71 LTKIPS-GKDPYAAVKKQTAEATQDAINAGIKLIELEFPPVRGKLDISLGETLDANRSFARELARSFSARMGKALWLVFPDDAEAELAQNTYGGTTFRVVGINSAIKDLKDEECQMQIVVNPGFDVNEWIVLDSLVRPDVPMVMLNGNLDKLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQVV-------SAAQSEKRGQRAAES-----KVLSSTPDRPDYNTAVKTVQ 305
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_005708059.1 (hypothetical protein Gasu_12130 [Galdieria sulphuraria] >EME31539.1 hypothetical protein Gasu_12130 [Galdieria sulphuraria]) HSP 1 Score: 124.0 bits (310), Expect = 8.500e-25 Identity = 65/200 (32.50%), Postives = 106/200 (53.00%), Query Frame = 0 Query: 52 KLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGEFLDDSREWTREFVR--PFTPKGSKLWVIFPDGKEATLANERWGGVNFRIIGIESAMKMPKEEVCELQVVVTPGFNVQEYINMEKIQRPGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGFIYRRYPEEWQQV 250 +LP D++ ++ ++ + DGL+ LE++FP +L + +D +R + + V+ P +V+FPD E+ LA E + I S + + L V++ PGF VQE+ +E+ VP+++ N +LD++RGGYYPR YP LY K++ L FEPV+Y++ G + RRYP WQ V Sbjct: 47 RLPESNVQLVQDIQ----ESCKSAICDGLKLLEVQFPPLKNIGSAALNQVMDANRTFAKSVVQRFPHVSGNGTTFVVFPDDAESKLAREDRDFRTLDSVFITSLQRDIDLQDASLVVILNPGFQVQEWFEVERFCNYQVPVILFNADLDKLRGGYYPRFLYPKLYATKDKCLTKFEPVYYVRFFVNGALIRRYPNPWQIV 242
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_002183049.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45267.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 117.5 bits (293), Expect = 8.000e-23 Identity = 96/307 (31.27%), Postives = 132/307 (43.00%), Query Frame = 0 Query: 49 PISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGEF--------LDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGGVNFR----IIGIESAMKMPKEEV------------------------------------CELQVVVTPGFN--VQEYINMEKIQR--PGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKF---FEPVFYLKPAQG----GFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRE-RPAYNDVVNAL 296 P K A D R A A+Q LRDG +QLEI+FP G D S +F L+ +R+W + K ++W I PD KE LA E W G FR + +A+ E +V PG V+++IN+E++ + P P VVNG LD++R GYYP +F+P L R + F FE VF LKP G++YR YPE WQ V L+ +R R ++ V+ V RE RP+Y D+V+AL Sbjct: 57 PFEKSTAKSLDIQGDFRNLAAPALQKALRDGWKQLEIDFPPLTGG-DQSKTQFDDFDNVQELNANRDWCVQLAPAIASKNREVWFILPDDKECELAKEEWTGQRFRQAAKFTSVRAAVLKTSGESQYSKAWGSTIASTMNKLTGGDGILADSSTLDDLGSGDRFHLVCQPGNGGPVEDWINVERLHKADPSQPTCVVNGALDKVRDGYYPAVFFPAL----ARTIPFYREFEAVFILKPVSDKGVYGWLYRVYPEPWQVV---------LQEPQRKQRGDQTVVVVEDKVALVRETRPSYKDIVDAL 349
BLAST of NO05G04870 vs. NCBI_GenBank
Match: EJK45002.1 (hypothetical protein THAOC_36416 [Thalassiosira oceanica]) HSP 1 Score: 116.7 bits (291), Expect = 1.400e-22 Identity = 87/304 (28.62%), Postives = 137/304 (45.07%), Query Frame = 0 Query: 64 VRKQAIDAVQAGLRDGLEQLEIEFP--ISPGRIDVSLGEF-----LDDSREWTREFVRPF----TPKGSKLWVIFPDGKEATLANERWGGVNFR--------------------------------------------------IIGIESAM-KMPKEEVCELQVVVTPGFN--VQEYINMEKIQRPGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQG----GFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNALKKES 300 +RK A A+ + + DG+ ++E+EFP + R +F LD ++EWT + F T K + W++FPD KE LA + + G ++ ++G +S++ + + L +VV PG V++++N EK+ P +PMVVVNG LD++RGG+Y +F+P L ER K FE YLKP G+++R YPE WQ V + T ++G +V + VE +P+YN VV+ L K S Sbjct: 75 LRKTAKLAIDSAIADGVSKIEVEFPPLLGGARSKSQFDDFDNVQELDSNKEWTMQLAPMFAGDKTYKDGRTWLVFPDLKECELAKKDFPGQRYQEATFTTIEAVTNFMSSSGSPGSSEEYAAPWGASLMSGLSSMMGGKDGDAGLLGDQSSLDSLNVDSPANLWLVVQPGNGGPVEDWVNCEKMHSPSIPMVVVNGALDKVRGGFYAPIFFPALAATVERFWKKFETGLYLKPFSDKGVYGWLWRVYPEPWQVV-------YEKVTPDKNGNA----QVEYQTVEVMTTKPSYNQVVSILLKAS 367
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_005538024.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81988.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 116.7 bits (291), Expect = 1.400e-22 Identity = 63/172 (36.63%), Postives = 97/172 (56.40%), Query Frame = 0 Query: 84 EIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGSK-LWVIFPDGKEATLANERWGGV--NFRIIGI---ESAMKMPKEEVCELQVVVTPGFNVQEYINMEK--IQRPGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGFIYRRYPEEWQ 248 E+ FP + +L LD + RE ++PF K L ++FPD EA +A + +G F + + E + + E L VV PGFN+ E++ +E+ + P +VV+NGN+DR+R YYP LFYP L +++R L+ FEP++YLKP G ++R +PE WQ Sbjct: 40 EVSFP-AVRDTTAALSRILDANTSHAREIIKPFAASFRKRLHLVFPDVAEAKIAEKVYGSSEHTFTLSALPLYERPAFLQQVEAPALVFVVQPGFNIDEWLQLERPALLYPDASIVVLNGNMDRLRSNYYPPLFYPRLTALRKRYLEQFEPIYYLKPLPNGLLFRVFPEPWQ 210
BLAST of NO05G04870 vs. NCBI_GenBank
Match: PTQ38197.1 (hypothetical protein MARPO_0052s0004 [Marchantia polymorpha]) HSP 1 Score: 112.5 bits (280), Expect = 2.600e-21 Identity = 79/228 (34.65%), Postives = 112/228 (49.12%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREFVRPFT--PKGSKLWVIFPDGKEATLANER-WGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQQVLTYYDFR 257 P+ YD++ +Q A ++ L+D +EIEFP PG DV G + S REF R F+ + + + FPD E A E + G +F++ IG+ KM + E+ V P FNV E I +E++ R P++V NG LDRIR GYYP FYP L ++ + L FE V+Y+ K GG ++R YP W QVL DF+ Sbjct: 91 PNDYDELMEQVKTATKSALKDSKLLMEIEFPTGGLDSVPG--DVEGGIEMSTSMLLVREFCRVFSDGDRAGRTRIFFPDVNEVESARENIFAGTSFKLDYLTKPSGLNDIGLGKKEKMADHVQAADEVFVCAYPYFNVNEMIAVEELYRESAQATRRPLIVFNGELDRIRSGYYPSFFYPKLGSLAKNFLPKFETVYYIHNFKGQSGGVLFRAYPGPW-QVLRRVDFK 315
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_010677466.1 (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 108.2 bits (269), Expect = 4.900e-20 Identity = 79/243 (32.51%), Postives = 120/243 (49.38%), Query Frame = 0 Query: 37 HCFPSTTLLCAIPISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREFV-RPFTP-KGSKLWVIFPDGKEATLA-NERWGGVNFRI-----------IGIESAMKM-----PKEEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 HC+PS + S A P+ Y ++ +QA +A + ++D ++ +EIEFP S PG D G + +S + REF R TP K + + FP+ E A N + GV+ ++ G + +KM P++ EL VV P FNV E + +E++ + V ++V NG LDRIR GYYP FYP L + + + E V+Y+ K GG ++R YP WQ Sbjct: 54 HCYPSFVTYASNNFSLSDAPFPTDYYELLRQAKEATELAMKDNIQLMEIEFPTSGLQSVPG--DGEGGTEMTESMQLIREFCDRLVTPEKAAWTRIFFPEASEVKFARNSTFEGVSLKLDYLTKPSFLEDFGFGTKVKMADRVRPED---ELFVVAYPYFNVNEMLVVEELYKEAVANTSRKLIVFNGELDRIRSGYYPSFFYPKLAALTKTLFPKMETVYYIHNFKGRNGGTLFRCYPGLWQ 291
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_010677467.1 (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 108.2 bits (269), Expect = 4.900e-20 Identity = 79/243 (32.51%), Postives = 120/243 (49.38%), Query Frame = 0 Query: 37 HCFPSTTLLCAIPISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREFV-RPFTP-KGSKLWVIFPDGKEATLA-NERWGGVNFRI-----------IGIESAMKM-----PKEEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 HC+PS + S A P+ Y ++ +QA +A + ++D ++ +EIEFP S PG D G + +S + REF R TP K + + FP+ E A N + GV+ ++ G + +KM P++ EL VV P FNV E + +E++ + V ++V NG LDRIR GYYP FYP L + + + E V+Y+ K GG ++R YP WQ Sbjct: 7 HCYPSFVTYASNNFSLSDAPFPTDYYELLRQAKEATELAMKDNIQLMEIEFPTSGLQSVPG--DGEGGTEMTESMQLIREFCDRLVTPEKAAWTRIFFPEASEVKFARNSTFEGVSLKLDYLTKPSFLEDFGFGTKVKMADRVRPED---ELFVVAYPYFNVNEMLVVEELYKEAVANTSRKLIVFNGELDRIRSGYYPSFFYPKLAALTKTLFPKMETVYYIHNFKGRNGGTLFRCYPGLWQ 244
BLAST of NO05G04870 vs. NCBI_GenBank
Match: KMT11447.1 (hypothetical protein BVRB_5g107710 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 108.2 bits (269), Expect = 4.900e-20 Identity = 79/243 (32.51%), Postives = 120/243 (49.38%), Query Frame = 0 Query: 37 HCFPSTTLLCAIPISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREFV-RPFTP-KGSKLWVIFPDGKEATLA-NERWGGVNFRI-----------IGIESAMKM-----PKEEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 HC+PS + S A P+ Y ++ +QA +A + ++D ++ +EIEFP S PG D G + +S + REF R TP K + + FP+ E A N + GV+ ++ G + +KM P++ EL VV P FNV E + +E++ + V ++V NG LDRIR GYYP FYP L + + + E V+Y+ K GG ++R YP WQ Sbjct: 47 HCYPSFVTYASNNFSLSDAPFPTDYYELLRQAKEATELAMKDNIQLMEIEFPTSGLQSVPG--DGEGGTEMTESMQLIREFCDRLVTPEKAAWTRIFFPEASEVKFARNSTFEGVSLKLDYLTKPSFLEDFGFGTKVKMADRVRPED---ELFVVAYPYFNVNEMLVVEELYKEAVANTSRKLIVFNGELDRIRSGYYPSFFYPKLAALTKTLFPKMETVYYIHNFKGRNGGTLFRCYPGLWQ 284 The following BLAST results are available for this feature:
BLAST of NO05G04870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04870 ID=NO05G04870|Name=NO05G04870|organism=Nannochloropsis oceanica|type=gene|length=1914bpback to top protein sequence of NO05G04870.1 >NO05G04870.1-protein ID=NO05G04870.1-protein|Name=NO05G04870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bpback to top Synonyms
Publications
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