NO05G04870.1, NO05G04870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04870.1
Unique NameNO05G04870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1387
Alignment locationchr5:1262687..1264600 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1262687..1264600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04870.1 vs.
Match: EWM27910.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 427.9 bits (1099), Expect = 2.800e-116
Identity = 223/321 (69.47%), Postives = 257/321 (80.06%), Query Frame = 0 
Query:    3 VVHDHAPYFLLLLLLLITNKSIYAFVLPTSRPGHHCFPSTTLLCAIPISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRIIGIESAMKMPKEEVCELQVVVTPGFNVQEYINMEKIQRPGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNALKKESARMGREAQEAQEEEERVEAAEREA 324
            +V  H  +  +L+L L+ + S  AF    S P    F S  +L A   SKLP +G SFY +VRKQA +AVQAGL+ G EQ+EIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKG+KLWVIFPDGKEATLA +RWGGVNFRI+GI++AMK  K+E CELQ+ VTPGFNVQEYIN+EK++RPGVPM+VVNGNLDRIRGGYYPR+FYPGLYNVKERML++FEPV+YLKPAQGGFI+R++PEEWQQVL YYD +      R D   + +KEVL KVV T+ ERPAYNDVVNALKKES  M R AQEAQ      EAAEREA
Sbjct:   13 IVAFHKTWLSILVLFLLYSTSTNAFY-GLSGPRRSQFVS--VLYASTPSKLPVVGSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGD---KGRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQ------EAAEREA 321
The following BLAST results are available for this feature:
BLAST of NO05G04870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27910.12.800e-11669.47protein of unknown function DUF1995 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04870NO05G04870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04870.1NO05G04870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04870.1.cds1NO05G04870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04870.1.cds2NO05G04870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04870.1.cds3NO05G04870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04870.1.cds4NO05G04870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04870.1.cds5NO05G04870.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04870.1 ID=NO05G04870.1|Name=NO05G04870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
AGGCGCTGAAGATATAAGCGACGTCTGTGGTGGCGTGGGCATCAGGACAG
CAATGCTTGTTGTCCATGACCATGCGCCGTATTTCCTGCTCCTGCTCCTC
CTTCTGATCACTAATAAATCAATTTATGCCTTTGTCCTTCCTACGTCCCG
CCCTGGCCACCACTGCTTCCCATCCACCACGCTCCTCTGCGCCATCCCCA
TAAGCAAACTTCCTGCAATCGGCCCCTCTTTCTACGACGACGTCCGCAAA
CAAGCCATAGACGCCGTCCAAGCAGGCCTTAGAGACGGGCTCGAGCAACT
CGAGATCGAATTCCCTATCAGCCCGGGCAGAATCGATGTATCGTTGGGTG
AATTCTTGGATGACTCCCGGGAATGGACGAGAGAATTCGTGCGACCTTTC
ACCCCCAAAGGATCAAAGCTGTGGGTAATTTTCCCTGATGGCAAGGAGGC
GACGCTCGCGAATGAGCGTTGGGGAGGCGTGAATTTTCGGATAATTGGGA
TCGAATCCGCCATGAAGATGCCCAAGGAGGAAGTCTGCGAGTTGCAGGTG
GTCGTCACCCCAGGCTTTAATGTTCAAGAATATATTAATATGGAGAAGAT
TCAACGCCCGGGCGTGCCCATGGTGGTCGTCAATGGCAACCTCGATCGGA
TCCGAGGAGGCTACTACCCTCGACTCTTCTATCCAGGTCTCTACAACGTC
AAGGAGCGAATGCTCAAGTTTTTCGAACCTGTCTTCTACCTCAAGCCAGC
CCAAGGTGGCTTTATCTATAGAAGGTACCCGGAGGAATGGCAGCAGGTGT
TGACGTATTATGATTTCCGGCAGCAGCTGAGGACGGTGAGGAGGGACGGG
CGGACGGAGGAGAAGAAGGAGGTGCTCCGGAAGGTGGTGGAGACAACGAG
GGAGCGGCCGGCCTACAACGATGTGGTGAACGCGCTCAAGAAGGAGAGTG
CCAGAATGGGGAGGGAGGCCCAGGAAGCGCAGGAGGAGGAGGAGAGGGTG
GAGGCGGCGGAGAGGGAGGCGAAGAGACAAAGATTAGGATAGGAGGAAGT
GTGGGGGGTTACAGGTGTCAAGAAGATATTGAATGGCAAACGACGTGGTT
TGGCAGCCCTGTGGGTGTTGCTTTAGCGTGTGATGTTCTTTGTTTCGTCC
CCCCCTTCGTTCCTTCAGCTTCATATCATTCCACACACACACACATACTC
ACACGTACACACATTCCAAGTCACTTGCCTTAACCCCATTGGCCACACGT
CTGTACACCACTCAAACCTCTTTTATTATATTTTGCCTTTCCTCCCTGAC
TCCCTGACTTCCTTCTTCCCTCTTATAATGACGCCGGCCCCCCTCCCCCC
CCTTGAAGCATCGAAAAAAAAGTCATCAACCGTGTGC
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protein sequence of NO05G04870.1

>NO05G04870.1-protein ID=NO05G04870.1-protein|Name=NO05G04870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MLVVHDHAPYFLLLLLLLITNKSIYAFVLPTSRPGHHCFPSTTLLCAIPI
SKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGE
FLDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRIIGI
ESAMKMPKEEVCELQVVVTPGFNVQEYINMEKIQRPGVPMVVVNGNLDRI
RGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGFIYRRYPEEWQQVL
TYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNALKKESA
RMGREAQEAQEEEERVEAAEREAKRQRLG*
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mRNA from alignment at chr5:1262687..1264600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04870.1 ID=NO05G04870.1|Name=NO05G04870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr5:1262687..1264600- (Nannochloropsis oceanica)
AGGCGCTGAAGATATAAGCGACGTCTGTGGTGGCGTGGGCATCAGGACAG
CAATGCTTGGTAAGTTCCGGAAAATGTACGAAAAACCTCTTGCGCCTCTT
GCAACAGACCTCCCCATCCTCCCTCCCTTTCCCTGTTCCAATAGTTGTCC
ATGACCATGCGCCGTATTTCCTGCTCCTGCTCCTCCTTCTGATCACTAAT
AAATCAATTTATGCCTTTGTCCTTCCTACGTCCCGCCCTGGCCACCACTG
CTTCCCATCCACCACGCTCCTCTGCGCCATCCCCATAAGCAAACTTCCTG
CAATCGGCCCCTCTTTCTACGACGACGTCCGCAAACAAGGTGATTTCGTC
TTGTTGTCTTTGTCTCCTTCCATTTCGCTTTCTTTCCTAGTTTCCTTTCC
TCCTTACCTACCAGACCCATCACACCCTTCCCTTCACACCAATACCAGCC
ATAGACGCCGTCCAAGCAGGCCTTAGAGACGGGCTCGAGCAACTCGAGAT
CGAATTCCCTATCAGCCCGGGCAGAATCGATGTATCGTTGGGTGAATTCT
TGGATGACTCCCGGGAATGGACGAGAGAATTCGTGCGACCTTTCACCCCC
AAAGGATCAAAGCTGTGGGTAATTTTCCCTGATGGCAAGGAGGCGACGCT
CGCGAATGAGCGTTGGGGAGGCGTGAATTTTCGGATAATTGGGATCGAAT
CCGCCATGAAGATGCCCAAGGAGGAAGTCTGCGAGTTGCAGGTACGTCAT
AGTGGAGAGTAGGGGGCGGGGGAAAGGCCAATTTTGTGAGTGTATGACAT
ATTTTTGACTGCAATGTGCACTTGTTCCCCCTAAATTCCCTCCCTTTCTC
TCGTCTTCTTTCCGTCCATTTCCACAGGTGGTCGTCACCCCAGGCTTTAA
TGTTCAAGAATATATTAATATGGAGAAGATTCAACGCCCGGGCGTGCCCA
TGGTGGTCGTCAATGGCAACCTCGATCGGATCCGAGGAGGTGAGGAAGGG
AGTGAGGGAGGGAGGGAGGAAAGGAGGACGCAAGCTGAAACCAAAAGCGG
AGGACATGGGTTGAGAAATTGTTATTTACATGCTTAACTTAAAATTCCGC
CACTTGATCCATTGTTAATGTGTAAGAAAGTGCTACGTACCCCTACTCAC
TCTCCCCTCCCTCCCTCCCTCCCTCCTACCCTCAAGGCTACTACCCTCGA
CTCTTCTATCCAGGTCTCTACAACGTCAAGGAGCGAATGCTCAAGTTTTT
CGAACCTGTCTTCTACCTCAAGCCAGCCCAAGGTGGCTTTATCTATAGAA
GGTACCCGGAGGAATGGCAGCAGGTGTTGACGTATTATGATTTCCGGCAG
CAGCTGAGGACGGTGAGGAGGGACGGGCGGACGGAGGAGAAGAAGGAGGT
GCTCCGGAAGGTGGTGGAGACAACGAGGGAGCGGCCGGCCTACAACGATG
TGGTGAACGCGCTCAAGAAGGAGAGTGCCAGAATGGGGAGGGAGGCCCAG
GAAGCGCAGGAGGAGGAGGAGAGGGTGGAGGCGGCGGAGAGGGAGGCGAA
GAGACAAAGATTAGGATAGGAGGAAGTGTGGGGGGTTACAGGTGTCAAGA
AGATATTGAATGGCAAACGACGTGGTTTGGCAGCCCTGTGGGTGTTGCTT
TAGCGTGTGATGTTCTTTGTTTCGTCCCCCCCTTCGTTCCTTCAGCTTCA
TATCATTCCACACACACACACATACTCACACGTACACACATTCCAAGTCA
CTTGCCTTAACCCCATTGGCCACACGTCTGTACACCACTCAAACCTCTTT
TATTATATTTTGCCTTTCCTCCCTGACTCCCTGACTTCCTTCTTCCCTCT
TATAATGACGCCGGCCCCCCTCCCCCCCCTTGAAGCATCGAAAAAAAAGT
CATCAACCGTGTGC
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Coding sequence (CDS) from alignment at chr5:1262687..1264600-

>NO05G04870.1 ID=NO05G04870.1|Name=NO05G04870.1|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr5:1262687..1264600- (Nannochloropsis oceanica)
ATGCTTGTTGTCCATGACCATGCGCCGTATTTCCTGCTCCTGCTCCTCCT
TCTGATCACTAATAAATCAATTTATGCCTTTGTCCTTCCTACGTCCCGCC
CTGGCCACCACTGCTTCCCATCCACCACGCTCCTCTGCGCCATCCCCATA
AGCAAACTTCCTGCAATCGGCCCCTCTTTCTACGACGACGTCCGCAAACA
AGCCATAGACGCCGTCCAAGCAGGCCTTAGAGACGGGCTCGAGCAACTCG
AGATCGAATTCCCTATCAGCCCGGGCAGAATCGATGTATCGTTGGGTGAA
TTCTTGGATGACTCCCGGGAATGGACGAGAGAATTCGTGCGACCTTTCAC
CCCCAAAGGATCAAAGCTGTGGGTAATTTTCCCTGATGGCAAGGAGGCGA
CGCTCGCGAATGAGCGTTGGGGAGGCGTGAATTTTCGGATAATTGGGATC
GAATCCGCCATGAAGATGCCCAAGGAGGAAGTCTGCGAGTTGCAGGTGGT
CGTCACCCCAGGCTTTAATGTTCAAGAATATATTAATATGGAGAAGATTC
AACGCCCGGGCGTGCCCATGGTGGTCGTCAATGGCAACCTCGATCGGATC
CGAGGAGGCTACTACCCTCGACTCTTCTATCCAGGTCTCTACAACGTCAA
GGAGCGAATGCTCAAGTTTTTCGAACCTGTCTTCTACCTCAAGCCAGCCC
AAGGTGGCTTTATCTATAGAAGGTACCCGGAGGAATGGCAGCAGGTGTTG
ACGTATTATGATTTCCGGCAGCAGCTGAGGACGGTGAGGAGGGACGGGCG
GACGGAGGAGAAGAAGGAGGTGCTCCGGAAGGTGGTGGAGACAACGAGGG
AGCGGCCGGCCTACAACGATGTGGTGAACGCGCTCAAGAAGGAGAGTGCC
AGAATGGGGAGGGAGGCCCAGGAAGCGCAGGAGGAGGAGGAGAGGGTGGA
GGCGGCGGAGAGGGAGGCGAAGAGACAAAGATTAGGATAG
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Synonyms
Publications