NO05G04790, NO05G04790 (gene) Nannochloropsis oceanica

Overview
NameNO05G04790
Unique NameNO05G04790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1754
Alignment locationchr5:1244373..1246126 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1244373..1246126 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO05G04790 vs. NCBI_GenBank
Match: EWM27920.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 384.4 bits (986), Expect = 6.200e-103
Identity = 277/578 (47.92%), Postives = 342/578 (59.17%), Query Frame = 0 
Query:    5 ATLVRRSS-RRRPLPFSSTAAAHRSQAPLPSASITILRGLANIPSHTMPPPRTPPPVPDANVEGLHQRLLMHELAREKEAADAWKANVVAEALATLRGEGGPRKSKGSIAHRQALLTLGHYGSSLEPEDALRVIHQALKLQGLGKVAFTTYQELSKRPEGVMTLLHDADALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCNVPVTSPSSIXXXXXXLPPLPIVSRDAFLAVLRLLSERDRYKHHWRFAEDMVKDRRLPGVPVDVEVVAAAMVVSWKAQKWGSVQRLSAFLAGKGEVSGPVLLNAGQVWKEGREEEEEERGEVRRVVPVGLSAYALKDWKTMMTLRSMTEILRRMEGACVEKTVPEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVTRRRPAVVTTAHVNMLLYALLKVGQLDEAQALVVS----MVKQAKAPLXXXXXXXXXXXXXXXXXXVMDAFGRKGNWQGALQLLNESNTLPTPPSPAAMRQLYKTAIAALGKDKLWEGALSLFYEMHERGVAADAQVYTTLLKALKEGGGWSRRLSF 578
            A+LVR +  RRRPLPFS    A     P P+  +  +R LA IP       R   P PDAN+EGL  RL  H LA+++EA+DA + N  A AL  LR EG  R + G  AHR+ALLTLGHYG  L P DALRV+HQAL ++GL K+AF T+ ELSKRPEG+  ++ D +ALL                                              +   PV + +         PP+P +SR+A LA+LRLL ER R +H+W  AEDMVKD+R+ G  VDVEVVAAAMVV+W+A KW +VQRLSA++AGK  V   VLL +G+V KE   +EEE RGE+RRV+  GLS YA K+WKT MTLRS+ ++L RM+    E   P      XXXXXXXXXXXX                   +   P V+ TAH+NM L ALL+V QLDEA A++ S             XXXXXXXXXXXX      +M+A GR+G+    L LLN +  LP  P+P+  R LYKTAIAA+GK   WEGALSL+YEMHERGVAADAQV+T+LLKALK GG      SF
Sbjct:   19 ASLVRSTVWRRRPLPFSFQVQA---PPPFPAQRLCAVRELATIPL------RWSKPNPDANIEGLQHRLDTHGLAQKEEASDARRVNAFAAALRILRREGSHRDT-GKEAHRRALLTLGHYGRELAPADALRVVHQALAMRGLQKLAFITFLELSKRPEGLAAIVQDVNALL-------------------------LSSCRAEQHRMAIMLVSMLQQAHTKPVPAAALEDGFSPTAPPVPTLSREASLALLRLLQERSRSQHYWHVAEDMVKDQRVMGASVDVEVVAAAMVVAWRAVKWAAVQRLSAYVAGKAGVPEVVLLTSGEVRKE-EGKEEESRGELRRVLSPGLSEYARKNWKTAMTLRSLVKVLGRMDAKNEEDVPPPTAAETXXXXXXXXXXXXAGGQGHVP-----------SAGAPHVLHTAHMNMYLKALLRVRQLDEAHAVLSSXXXXXXXXXXXXXXXXXXXXXXXXXVLSLCMLMEALGRQGDAPAVLTLLNRAQDLPWTPTPSDYRVLYKTAIAAVGKQGRWEGALSLYYEMHERGVAADAQVFTSLLKALKTGGKADSAFSF 549
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BLAST of NO05G04790 vs. NCBI_GenBank
Match: XP_005854931.1 (syntaxin-like protein [Nannochloropsis gaditana CCMP526] >EKU21419.1 syntaxin-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.6 bits (244), Expect = 6.800e-17
Identity = 52/91 (57.14%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:  487 VMDAFGRKGNWQGALQLLNESNTLPTPPSPAAMRQLYKTAIAALGKDKLWEGALSLFYEMHERGVAADAQVYTTLLKALKEGGGWSRRLSF 578
            V+D      +    L LLN +  LP  P+ +  R LYKTAIAA+GK   WEGALSL+YEMHERGVAADAQV+T+LLKALK GG      SF
Sbjct:  190 VLDRIDYNIDAPAVLTLLNRAQDLPRTPTLSDYRVLYKTAIAAVGKQGRWEGALSLYYEMHERGVAADAQVFTSLLKALKTGGKADSAFSF 280
The following BLAST results are available for this feature:
BLAST of NO05G04790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27920.16.200e-10347.92Tetratricopeptide-like helical [Nannochloropsis ga... [more]
XP_005854931.16.800e-1757.14syntaxin-like protein [Nannochloropsis gaditana CC... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04790.1NO05G04790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04790.1NO05G04790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04790 ID=NO05G04790|Name=NO05G04790|organism=Nannochloropsis oceanica|type=gene|length=1754bp
ACAGCCAAAGCATGTTGCTGGCCGCGACCCTGGTACGGCGGAGCAGCCGA
CGACGACCCTTGCCCTTCTCCTCCACAGCAGCCGCACATCGTTCCCAAGC
TCCTCTCCCATCAGCATCCATCACCATCCTCCGCGGCTTGGCCAACATCC
CCTCCCACACCATGCCCCCACCGCGCACACCGCCACCCGTACCCGACGCC
AATGTAGAGGGGCTGCATCAGCGGCTCTTAATGCACGAGCTGGCACGAGA
AAAGGAGGCAGCGGACGCATGGAAGGCCAATGTAGTGGCAGAGGCTTTGG
CGACCCTCCGGGGCGAGGGCGGGCCCCGCAAGAGCAAGGGAAGCATAGCC
CATCGACAGGCCCTCTTGACGCTAGGACATTACGGGAGCTCACTCGAGCC
TGAGGATGCTCTGCGTGTGATTCATCAGGCATTGAAACTGCAAGGGTTGG
GCAAAGTGGCTTTCACGACGTACCAGGAGCTAAGCAAACGACCCGAAGGT
GTCATGACACTTTTGCATGACGCAGACGCATTGCTCTTGGCGTGCTGCCG
CGCAGAGAAACATCGCATGGCTATGATGGTGGTAAAGCAAGTCCAGGAGG
CATATTTTGATGCTGCCGCACGACAGGAAACAGCAGGAGGAGGAGAAGGA
GGAGGAGGAGGAGGGGGGCAAGCTTCCTGCAACGTACCCGTGACATCGCC
CTCCTCCATCCCCTCCTCCTCACCATCGCTACCACCACTCCCAATTGTTT
CCCGCGATGCTTTCTTGGCTGTCCTCCGCTTGTTGAGCGAACGTGATCGA
TACAAGCACCATTGGCGGTTTGCGGAAGACATGGTGAAGGACAGGCGACT
GCCAGGAGTACCTGTGGACGTGGAGGTGGTGGCAGCGGCGATGGTGGTCT
CGTGGAAGGCTCAAAAATGGGGATCTGTTCAGAGATTATCTGCCTTTCTG
GCAGGCAAGGGAGAGGTGTCAGGGCCGGTGTTGCTGAATGCGGGGCAGGT
TTGGAAAGAGGGGAGGGAAGAGGAGGAGGAGGAGAGGGGGGAGGTCAGGA
GGGTGGTGCCGGTGGGGTTGTCAGCTTATGCACTCAAGGATTGGAAGACG
ATGATGACGTTGCGAAGCATGACAGAAATTTTAAGGCGAATGGAAGGCGC
GTGTGTGGAAAAGACGGTGCCTGAAGAAAAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCACCAGCAGCAGCAGGACCAGCACCAGCACCAGCACCAGCA
CCAGCAGGGCGGGGAGGGGGAAATACTAAAGTGACACGTCGTCGGCCAGC
GGTCGTGACCACCGCTCATGTGAACATGCTCCTATACGCCTTGCTCAAAG
TAGGACAACTTGATGAAGCCCAAGCGCTCGTCGTATCCATGGTTAAGCAA
GCAAAGGCACCCCTGTCCTCCTCGTCCTCCCTCCCTCTCCCCATGCCCGA
CGCCCTCTCCCTCTCTATGGTAATGGACGCGTTCGGTCGCAAAGGCAACT
GGCAAGGAGCTCTGCAACTACTCAACGAATCCAACACCCTGCCGACCCCT
CCCTCTCCCGCCGCCATGCGCCAGCTCTACAAAACGGCCATAGCAGCCTT
GGGGAAAGATAAGCTGTGGGAGGGGGCCCTGTCCTTGTTTTACGAGATGC
ACGAGAGAGGCGTGGCGGCCGACGCCCAGGTGTACACGACATTATTGAAG
GCTTTGAAGGAGGGGGGAGGGTGGAGTCGGCGTTTGAGTTTTGGAGGATC
ATGA
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protein sequence of NO05G04790.1

>NO05G04790.1-protein ID=NO05G04790.1-protein|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MLLAATLVRRSSRRRPLPFSSTAAAHRSQAPLPSASITILRGLANIPSHT
MPPPRTPPPVPDANVEGLHQRLLMHELAREKEAADAWKANVVAEALATLR
GEGGPRKSKGSIAHRQALLTLGHYGSSLEPEDALRVIHQALKLQGLGKVA
FTTYQELSKRPEGVMTLLHDADALLLACCRAEKHRMAMMVVKQVQEAYFD
AAARQETAGGGEGGGGGGGQASCNVPVTSPSSIPSSSPSLPPLPIVSRDA
FLAVLRLLSERDRYKHHWRFAEDMVKDRRLPGVPVDVEVVAAAMVVSWKA
QKWGSVQRLSAFLAGKGEVSGPVLLNAGQVWKEGREEEEEERGEVRRVVP
VGLSAYALKDWKTMMTLRSMTEILRRMEGACVEKTVPEEKAAAAAAAAAA
PAAAGPAPAPAPAPAGRGGGNTKVTRRRPAVVTTAHVNMLLYALLKVGQL
DEAQALVVSMVKQAKAPLSSSSSLPLPMPDALSLSMVMDAFGRKGNWQGA
LQLLNESNTLPTPPSPAAMRQLYKTAIAALGKDKLWEGALSLFYEMHERG
VAADAQVYTTLLKALKEGGGWSRRLSFGGS*
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Synonyms
Publications