NO05G04790.1, NO05G04790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04790.1
Unique NameNO05G04790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1754
Alignment locationchr5:1244373..1246126 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1244373..1246126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04790.1 vs.
Match: EWM27920.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 449.5 bits (1155), Expect = 1.600e-122
Identity = 286/578 (49.48%), Postives = 363/578 (62.80%), Query Frame = 0 
Query:    5 ATLVRRSS-RRRPLPFSSTAAAHRSQAPLPSASITILRGLANIPSHTMPPPRTPPPVPDANVEGLHQRLLMHELAREKEAADAWKANVVAEALATLRGEGGPRKSKGSIAHRQALLTLGHYGSSLEPEDALRVIHQALKLQGLGKVAFTTYQELSKRPEGVMTLLHDADALLLACCRAEKHRMAMMVVKQVQEAYFDAAARQETAGGGEGGGGGGGQASCNVPVTSPSSIPSSSPSLPPLPIVSRDAFLAVLRLLSERDRYKHHWRFAEDMVKDRRLPGVPVDVEVVAAAMVVSWKAQKWGSVQRLSAFLAGKGEVSGPVLLNAGQVWKEGREEEEEERGEVRRVVPVGLSAYALKDWKTMMTLRSMTEILRRMEGACVEKTVPEEKAAAAAAAAAAPAAAGPAPAPAPAPAGRGGGNTKVTRRRPAVVTTAHVNMLLYALLKVGQLDEAQALVVSMVK----QAKAPLSSSSSLPLPMPDALSLSMVMDAFGRKGNWQGALQLLNESNTLPTPPSPAAMRQLYKTAIAALGKDKLWEGALSLFYEMHERGVAADAQVYTTLLKALKEGGGWSRRLSF 578
            A+LVR +  RRRPLPFS    A     P P+  +  +R LA IP       R   P PDAN+EGL  RL  H LA+++EA+DA + N  A AL  LR EG  R + G  AHR+ALLTLGHYG  L P DALRV+HQAL ++GL K+AF T+ ELSKRPEG+  ++ D +ALLL+ CRAE+HRMA+M+V  +Q+A+                           PV + +     SP+ PP+P +SR+A LA+LRLL ER R +H+W  AEDMVKD+R+ G  VDVEVVAAAMVV+W+A KW +VQRLSA++AGK  V   VLL +G+V KE   +EEE RGE+RRV+  GLS YA K+WKT MTLRS+ ++L RM+ A  E+ VP   AA  A       +   A          GG     +   P V+ TAH+NM L ALL+V QLDEA A++ SM+      +  P    +  P P PD LSL M+M+A GR+G+    L LLN +  LP  P+P+  R LYKTAIAA+GK   WEGALSL+YEMHERGVAADAQV+T+LLKALK GG      SF
Sbjct:   19 ASLVRSTVWRRRPLPFSFQVQA---PPPFPAQRLCAVRELATIPL------RWSKPNPDANIEGLQHRLDTHGLAQKEEASDARRVNAFAAALRILRREGSHRDT-GKEAHRRALLTLGHYGRELAPADALRVVHQALAMRGLQKLAFITFLELSKRPEGLAAIVQDVNALLLSSCRAEQHRMAIMLVSMLQQAH-------------------------TKPVPAAALEDGFSPTAPPVPTLSREASLALLRLLQERSRSQHYWHVAEDMVKDQRVMGASVDVEVVAAAMVVAWRAVKWAAVQRLSAYVAGKAGVPEVVLLTSGEVRKE-EGKEEESRGELRRVLSPGLSEYARKNWKTAMTLRSLVKVLGRMD-AKNEEDVPPPTAAETAGEGTGRRSGRDA----------GGQGHVPSAGAPHVLHTAHMNMYLKALLRVRQLDEAHAVLSSMLSPRSPPSACPFLPPALPPSPPPDVLSLCMLMEALGRQGDAPAVLTLLNRAQDLPWTPTPSDYRVLYKTAIAAVGKQGRWEGALSLYYEMHERGVAADAQVFTSLLKALKTGGKADSAFSF 549
The following BLAST results are available for this feature:
BLAST of NO05G04790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27920.11.600e-12249.48Tetratricopeptide-like helical [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04790NO05G04790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04790.1NO05G04790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04790.1.cds1NO05G04790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04790.1 ID=NO05G04790.1|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp
ACAGCCAAAGCATGTTGCTGGCCGCGACCCTGGTACGGCGGAGCAGCCGA
CGACGACCCTTGCCCTTCTCCTCCACAGCAGCCGCACATCGTTCCCAAGC
TCCTCTCCCATCAGCATCCATCACCATCCTCCGCGGCTTGGCCAACATCC
CCTCCCACACCATGCCCCCACCGCGCACACCGCCACCCGTACCCGACGCC
AATGTAGAGGGGCTGCATCAGCGGCTCTTAATGCACGAGCTGGCACGAGA
AAAGGAGGCAGCGGACGCATGGAAGGCCAATGTAGTGGCAGAGGCTTTGG
CGACCCTCCGGGGCGAGGGCGGGCCCCGCAAGAGCAAGGGAAGCATAGCC
CATCGACAGGCCCTCTTGACGCTAGGACATTACGGGAGCTCACTCGAGCC
TGAGGATGCTCTGCGTGTGATTCATCAGGCATTGAAACTGCAAGGGTTGG
GCAAAGTGGCTTTCACGACGTACCAGGAGCTAAGCAAACGACCCGAAGGT
GTCATGACACTTTTGCATGACGCAGACGCATTGCTCTTGGCGTGCTGCCG
CGCAGAGAAACATCGCATGGCTATGATGGTGGTAAAGCAAGTCCAGGAGG
CATATTTTGATGCTGCCGCACGACAGGAAACAGCAGGAGGAGGAGAAGGA
GGAGGAGGAGGAGGGGGGCAAGCTTCCTGCAACGTACCCGTGACATCGCC
CTCCTCCATCCCCTCCTCCTCACCATCGCTACCACCACTCCCAATTGTTT
CCCGCGATGCTTTCTTGGCTGTCCTCCGCTTGTTGAGCGAACGTGATCGA
TACAAGCACCATTGGCGGTTTGCGGAAGACATGGTGAAGGACAGGCGACT
GCCAGGAGTACCTGTGGACGTGGAGGTGGTGGCAGCGGCGATGGTGGTCT
CGTGGAAGGCTCAAAAATGGGGATCTGTTCAGAGATTATCTGCCTTTCTG
GCAGGCAAGGGAGAGGTGTCAGGGCCGGTGTTGCTGAATGCGGGGCAGGT
TTGGAAAGAGGGGAGGGAAGAGGAGGAGGAGGAGAGGGGGGAGGTCAGGA
GGGTGGTGCCGGTGGGGTTGTCAGCTTATGCACTCAAGGATTGGAAGACG
ATGATGACGTTGCGAAGCATGACAGAAATTTTAAGGCGAATGGAAGGCGC
GTGTGTGGAAAAGACGGTGCCTGAAGAAAAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCACCAGCAGCAGCAGGACCAGCACCAGCACCAGCACCAGCA
CCAGCAGGGCGGGGAGGGGGAAATACTAAAGTGACACGTCGTCGGCCAGC
GGTCGTGACCACCGCTCATGTGAACATGCTCCTATACGCCTTGCTCAAAG
TAGGACAACTTGATGAAGCCCAAGCGCTCGTCGTATCCATGGTTAAGCAA
GCAAAGGCACCCCTGTCCTCCTCGTCCTCCCTCCCTCTCCCCATGCCCGA
CGCCCTCTCCCTCTCTATGGTAATGGACGCGTTCGGTCGCAAAGGCAACT
GGCAAGGAGCTCTGCAACTACTCAACGAATCCAACACCCTGCCGACCCCT
CCCTCTCCCGCCGCCATGCGCCAGCTCTACAAAACGGCCATAGCAGCCTT
GGGGAAAGATAAGCTGTGGGAGGGGGCCCTGTCCTTGTTTTACGAGATGC
ACGAGAGAGGCGTGGCGGCCGACGCCCAGGTGTACACGACATTATTGAAG
GCTTTGAAGGAGGGGGGAGGGTGGAGTCGGCGTTTGAGTTTTGGAGGATC
ATGA
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protein sequence of NO05G04790.1

>NO05G04790.1-protein ID=NO05G04790.1-protein|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MLLAATLVRRSSRRRPLPFSSTAAAHRSQAPLPSASITILRGLANIPSHT
MPPPRTPPPVPDANVEGLHQRLLMHELAREKEAADAWKANVVAEALATLR
GEGGPRKSKGSIAHRQALLTLGHYGSSLEPEDALRVIHQALKLQGLGKVA
FTTYQELSKRPEGVMTLLHDADALLLACCRAEKHRMAMMVVKQVQEAYFD
AAARQETAGGGEGGGGGGGQASCNVPVTSPSSIPSSSPSLPPLPIVSRDA
FLAVLRLLSERDRYKHHWRFAEDMVKDRRLPGVPVDVEVVAAAMVVSWKA
QKWGSVQRLSAFLAGKGEVSGPVLLNAGQVWKEGREEEEEERGEVRRVVP
VGLSAYALKDWKTMMTLRSMTEILRRMEGACVEKTVPEEKAAAAAAAAAA
PAAAGPAPAPAPAPAGRGGGNTKVTRRRPAVVTTAHVNMLLYALLKVGQL
DEAQALVVSMVKQAKAPLSSSSSLPLPMPDALSLSMVMDAFGRKGNWQGA
LQLLNESNTLPTPPSPAAMRQLYKTAIAALGKDKLWEGALSLFYEMHERG
VAADAQVYTTLLKALKEGGGWSRRLSFGGS*
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mRNA from alignment at chr5:1244373..1246126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04790.1 ID=NO05G04790.1|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp|location=Sequence derived from alignment at chr5:1244373..1246126- (Nannochloropsis oceanica)
ACAGCCAAAGCATGTTGCTGGCCGCGACCCTGGTACGGCGGAGCAGCCGA
CGACGACCCTTGCCCTTCTCCTCCACAGCAGCCGCACATCGTTCCCAAGC
TCCTCTCCCATCAGCATCCATCACCATCCTCCGCGGCTTGGCCAACATCC
CCTCCCACACCATGCCCCCACCGCGCACACCGCCACCCGTACCCGACGCC
AATGTAGAGGGGCTGCATCAGCGGCTCTTAATGCACGAGCTGGCACGAGA
AAAGGAGGCAGCGGACGCATGGAAGGCCAATGTAGTGGCAGAGGCTTTGG
CGACCCTCCGGGGCGAGGGCGGGCCCCGCAAGAGCAAGGGAAGCATAGCC
CATCGACAGGCCCTCTTGACGCTAGGACATTACGGGAGCTCACTCGAGCC
TGAGGATGCTCTGCGTGTGATTCATCAGGCATTGAAACTGCAAGGGTTGG
GCAAAGTGGCTTTCACGACGTACCAGGAGCTAAGCAAACGACCCGAAGGT
GTCATGACACTTTTGCATGACGCAGACGCATTGCTCTTGGCGTGCTGCCG
CGCAGAGAAACATCGCATGGCTATGATGGTGGTAAAGCAAGTCCAGGAGG
CATATTTTGATGCTGCCGCACGACAGGAAACAGCAGGAGGAGGAGAAGGA
GGAGGAGGAGGAGGGGGGCAAGCTTCCTGCAACGTACCCGTGACATCGCC
CTCCTCCATCCCCTCCTCCTCACCATCGCTACCACCACTCCCAATTGTTT
CCCGCGATGCTTTCTTGGCTGTCCTCCGCTTGTTGAGCGAACGTGATCGA
TACAAGCACCATTGGCGGTTTGCGGAAGACATGGTGAAGGACAGGCGACT
GCCAGGAGTACCTGTGGACGTGGAGGTGGTGGCAGCGGCGATGGTGGTCT
CGTGGAAGGCTCAAAAATGGGGATCTGTTCAGAGATTATCTGCCTTTCTG
GCAGGCAAGGGAGAGGTGTCAGGGCCGGTGTTGCTGAATGCGGGGCAGGT
TTGGAAAGAGGGGAGGGAAGAGGAGGAGGAGGAGAGGGGGGAGGTCAGGA
GGGTGGTGCCGGTGGGGTTGTCAGCTTATGCACTCAAGGATTGGAAGACG
ATGATGACGTTGCGAAGCATGACAGAAATTTTAAGGCGAATGGAAGGCGC
GTGTGTGGAAAAGACGGTGCCTGAAGAAAAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCACCAGCAGCAGCAGGACCAGCACCAGCACCAGCACCAGCA
CCAGCAGGGCGGGGAGGGGGAAATACTAAAGTGACACGTCGTCGGCCAGC
GGTCGTGACCACCGCTCATGTGAACATGCTCCTATACGCCTTGCTCAAAG
TAGGACAACTTGATGAAGCCCAAGCGCTCGTCGTATCCATGGTTAAGCAA
GCAAAGGCACCCCTGTCCTCCTCGTCCTCCCTCCCTCTCCCCATGCCCGA
CGCCCTCTCCCTCTCTATGGTAATGGACGCGTTCGGTCGCAAAGGCAACT
GGCAAGGAGCTCTGCAACTACTCAACGAATCCAACACCCTGCCGACCCCT
CCCTCTCCCGCCGCCATGCGCCAGCTCTACAAAACGGCCATAGCAGCCTT
GGGGAAAGATAAGCTGTGGGAGGGGGCCCTGTCCTTGTTTTACGAGATGC
ACGAGAGAGGCGTGGCGGCCGACGCCCAGGTGTACACGACATTATTGAAG
GCTTTGAAGGAGGGGGGAGGGTGGAGTCGGCGTTTGAGTTTTGGAGGATC
ATGA
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Coding sequence (CDS) from alignment at chr5:1244373..1246126-

>NO05G04790.1 ID=NO05G04790.1|Name=NO05G04790.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr5:1244373..1246126- (Nannochloropsis oceanica)
ATGTTGCTGGCCGCGACCCTGGTACGGCGGAGCAGCCGACGACGACCCTT
GCCCTTCTCCTCCACAGCAGCCGCACATCGTTCCCAAGCTCCTCTCCCAT
CAGCATCCATCACCATCCTCCGCGGCTTGGCCAACATCCCCTCCCACACC
ATGCCCCCACCGCGCACACCGCCACCCGTACCCGACGCCAATGTAGAGGG
GCTGCATCAGCGGCTCTTAATGCACGAGCTGGCACGAGAAAAGGAGGCAG
CGGACGCATGGAAGGCCAATGTAGTGGCAGAGGCTTTGGCGACCCTCCGG
GGCGAGGGCGGGCCCCGCAAGAGCAAGGGAAGCATAGCCCATCGACAGGC
CCTCTTGACGCTAGGACATTACGGGAGCTCACTCGAGCCTGAGGATGCTC
TGCGTGTGATTCATCAGGCATTGAAACTGCAAGGGTTGGGCAAAGTGGCT
TTCACGACGTACCAGGAGCTAAGCAAACGACCCGAAGGTGTCATGACACT
TTTGCATGACGCAGACGCATTGCTCTTGGCGTGCTGCCGCGCAGAGAAAC
ATCGCATGGCTATGATGGTGGTAAAGCAAGTCCAGGAGGCATATTTTGAT
GCTGCCGCACGACAGGAAACAGCAGGAGGAGGAGAAGGAGGAGGAGGAGG
AGGGGGGCAAGCTTCCTGCAACGTACCCGTGACATCGCCCTCCTCCATCC
CCTCCTCCTCACCATCGCTACCACCACTCCCAATTGTTTCCCGCGATGCT
TTCTTGGCTGTCCTCCGCTTGTTGAGCGAACGTGATCGATACAAGCACCA
TTGGCGGTTTGCGGAAGACATGGTGAAGGACAGGCGACTGCCAGGAGTAC
CTGTGGACGTGGAGGTGGTGGCAGCGGCGATGGTGGTCTCGTGGAAGGCT
CAAAAATGGGGATCTGTTCAGAGATTATCTGCCTTTCTGGCAGGCAAGGG
AGAGGTGTCAGGGCCGGTGTTGCTGAATGCGGGGCAGGTTTGGAAAGAGG
GGAGGGAAGAGGAGGAGGAGGAGAGGGGGGAGGTCAGGAGGGTGGTGCCG
GTGGGGTTGTCAGCTTATGCACTCAAGGATTGGAAGACGATGATGACGTT
GCGAAGCATGACAGAAATTTTAAGGCGAATGGAAGGCGCGTGTGTGGAAA
AGACGGTGCCTGAAGAAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
CCAGCAGCAGCAGGACCAGCACCAGCACCAGCACCAGCACCAGCAGGGCG
GGGAGGGGGAAATACTAAAGTGACACGTCGTCGGCCAGCGGTCGTGACCA
CCGCTCATGTGAACATGCTCCTATACGCCTTGCTCAAAGTAGGACAACTT
GATGAAGCCCAAGCGCTCGTCGTATCCATGGTTAAGCAAGCAAAGGCACC
CCTGTCCTCCTCGTCCTCCCTCCCTCTCCCCATGCCCGACGCCCTCTCCC
TCTCTATGGTAATGGACGCGTTCGGTCGCAAAGGCAACTGGCAAGGAGCT
CTGCAACTACTCAACGAATCCAACACCCTGCCGACCCCTCCCTCTCCCGC
CGCCATGCGCCAGCTCTACAAAACGGCCATAGCAGCCTTGGGGAAAGATA
AGCTGTGGGAGGGGGCCCTGTCCTTGTTTTACGAGATGCACGAGAGAGGC
GTGGCGGCCGACGCCCAGGTGTACACGACATTATTGAAGGCTTTGAAGGA
GGGGGGAGGGTGGAGTCGGCGTTTGAGTTTTGGAGGATCATGA
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Synonyms
Publications