NO05G04730, NO05G04730 (gene) Nannochloropsis oceanica

Overview
NameNO05G04730
Unique NameNO05G04730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length763
Alignment locationchr5:1231253..1232015 +

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Properties
Property NameValue
DescriptionCytochrome c6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1231253..1232015 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity
GO:0020037heme binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036909Cyt_c-like_dom_sf
IPR009056Cyt_c-like_dom
Homology
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: XP_005854936.1 (cytochrome c6 [Nannochloropsis gaditana CCMP526] >EKU21424.1 cytochrome c6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.7 bits (522), Expect = 1.300e-49
Identity = 110/169 (65.09%), Postives = 126/169 (74.56%), Query Frame = 0 
Query:   18 LLCISTTSSTAFFLSSSTPQPGPQPAVTRTALSATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            LL +  + STAF L + TPQP    ++T +  S  PS +   +     W R AS LAL LLP+   SPA AFDAKG +LFENNCASCHV G NIIGYARGKTLKEEAL K K  +RA+IV++L +GKGVMPKY SYTRKNGDVVPAKL+EQEMG VADYVLEQAKAGWK
Sbjct:   19 LLSMCLSHSTAFILPARTPQPPKATSITTSTKSLAPSRTDPISRSQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: EWM28008.1 (cytochrome class i [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 3.700e-49
Identity = 110/169 (65.09%), Postives = 125/169 (73.96%), Query Frame = 0 
Query:   18 LLCISTTSSTAFFLSSSTPQPGPQPAVTRTALSATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            LL +  + STAF L + TPQP    + T +  S  PS +   +     W R AS LAL LLP+   SPA AFDAKG +LFENNCASCHV G NIIGYARGKTLKEEAL K K  +RA+IV++L +GKGVMPKY SYTRKNGDVVPAKL+EQEMG VADYVLEQAKAGWK
Sbjct:   19 LLSMCLSHSTAFILPARTPQPPKATSTTTSTKSLAPSRTDPISRNQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: EDX85261.1 (Cytochrome c subfamily, putative [Synechococcus sp. PCC 7335])

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-13
Identity = 51/120 (42.50%), Postives = 63/120 (52.50%), Query Frame = 0 
Query:   75 LTLLPSTLASPA---------GAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGW 186
            L + P TLASP          G     G  LF  NCA+CH  GGNII   RGK LK+ A+ +N     +AIVS++ QGKG+MP Y             KLS  E+  +A YV EQ+ AGW
Sbjct:   58 LAIAPPTLASPTTXXXXXTAPGPTAVTGAVLFTENCAACHANGGNII--RRGKNLKQRAMKRNGYGDISAIVSIVTQGKGIMPAYAE-----------KLSADEISAIAQYVHEQSDAGW 164
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_038017217.1 (hypothetical protein [Synechococcus sp. PCC 7335])

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-13
Identity = 51/120 (42.50%), Postives = 63/120 (52.50%), Query Frame = 0 
Query:   75 LTLLPSTLASPA---------GAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGW 186
            L + P TLASP          G     G  LF  NCA+CH  GGNII   RGK LK+ A+ +N     +AIVS++ QGKG+MP Y             KLS  E+  +A YV EQ+ AGW
Sbjct:    8 LAIAPPTLASPTTXXXXXTAPGPTAVTGAVLFTENCAACHANGGNII--RRGKNLKQRAMKRNGYGDISAIVSIVTQGKGIMPAYAE-----------KLSADEISAIAQYVHEQSDAGW 114
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_096828617.1 (cytochrome C6 [Tychonema bourrellyi] >PHX54284.1 cytochrome C6 [Tychonema bourrellyi FEM_GT703])

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-13
Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 0 
Query:   67 LRAASFLALTLLPSTLASPAGAFD-AKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            L + + LAL +      SPA A D AKG KLF+NNC++CHVGGGN++   R KTLK  AL K  + S  AI + + +GK  MP +G+           +L  +++  VA YVLEQA   WK
Sbjct:    4 LLSIALLALAIFTVGFGSPALAGDAAKGAKLFQNNCSACHVGGGNVV--VRAKTLKTAALEKYGMNSLEAITAQVTKGKNAMPAFGT-----------RLKPKQIEDVATYVLEQAAKNWK 111
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: OBQ30939.1 (cytochrome C6 [Aphanizomenon flos-aquae MDT14a])

HSP 1 Score: 85.5 bits (210), Expect = 1.900e-13
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 0 
Query:   73 LALTLLPSTLASPAGAFD-AKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            L++ +      SPA A D   G  LF+ NCA CHVGGGN++   R KTLK+EAL K  + S  AI++ +  GKG MP +G            +L  +++  VA YVLEQA  GWK
Sbjct:   10 LSVAIFTFAFTSPASAADTVSGAALFKANCAQCHVGGGNLVN--RAKTLKKEALEKYNMYSAKAIIAQVTHGKGAMPAFGK-----------RLKAEQIENVAAYVLEQADNGWK 111
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: OBQ21988.1 (cytochrome C6 [Anabaena sp. WA113])

HSP 1 Score: 84.3 bits (207), Expect = 4.300e-13
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0 
Query:   73 LALTLLPSTLASPAGAFD-AKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            L+L +     ++PA A D   G  LF+ NCA CHVGGGN++   R KTLK++AL K  + S  AI++ +  GKG MP +G            +L  +++  VA YVLEQA  GWK
Sbjct:   10 LSLAIFTFAFSTPASAADTVSGAALFKANCAQCHVGGGNLVN--RAKTLKKKALEKYNMYSAEAIIAQVTHGKGAMPAFGK-----------RLKAEQIENVAAYVLEQADNGWK 111
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: XP_005704623.1 (peroxisomal membrane MPV17/PMP22-like protein isoform 1 [Galdieria sulphuraria] >EME28103.1 peroxisomal membrane MPV17/PMP22-like protein isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 83.2 bits (204), Expect = 9.500e-13
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:   62 VHGNWLRAASFLALTLLPSTLASPAG--AFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            V+ + LR   F  +T    ++  P    AF+     LFE NCA+CH  GGNII YAR KTL  +AL KN   ++ +I  + +QGKG MP Y +           KL+++E+ +++DY+L++A   WK
Sbjct:  248 VNTSSLRDCCFSVITCSSLSIQEPLSITAFNQANT-LFEQNCAACHNNGGNIIFYARNKTLFPKALEKNGYLNKESISDLTKQGKGAMPGYAN-----------KLNDEEISLLSDYILQRAAENWK 362
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: OBQ20127.1 (cytochrome C6 [Aphanizomenon flos-aquae LD13])

HSP 1 Score: 83.2 bits (204), Expect = 9.500e-13
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0 
Query:   73 LALTLLPSTLASPAGAFD-AKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            L++ +     ++PA A D   G  LF+ NCA CHVGGGN++   R KTLK+EAL K  + S  AI++ +  GKG MP +G            +L  +++  VA YVLEQA  GWK
Sbjct:   10 LSVAIFTFAFSTPALAADTVSGAALFKANCAQCHVGGGNLVN--RAKTLKKEALEKYNMYSAKAIIAQVTHGKGAMPAFGK-----------RLKAEQIENVAAYVLEQADNGWK 111
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: OSX80300.1 (hypothetical protein BU14_0055s0023 [Porphyra umbilicalis])

HSP 1 Score: 83.2 bits (204), Expect = 9.500e-13
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 
Query:   84 SPAGAFD-AKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            +PAGA     G  +FE +CA+CH GGGNIIG++RGKTLK  AL K    +  A+  +++ GKGVMP Y +           +LS+ ++  V+ +V++ A  GWK
Sbjct:   68 TPAGAAQLGDGQTIFEKSCAACHAGGGNIIGFSRGKTLKTAALSKYGYDTPEAVAGLVRSGKGVMPGYDA----------NQLSDSDVSAVSQFVIDAAGRGWK 161
The following BLAST results are available for this feature:
BLAST of NO05G04730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854936.11.300e-4965.09cytochrome c6 [Nannochloropsis gaditana CCMP526] >... [more]
EWM28008.13.700e-4965.09cytochrome class i [Nannochloropsis gaditana][more]
EDX85261.11.500e-1342.50Cytochrome c subfamily, putative [Synechococcus sp... [more]
WP_038017217.11.500e-1342.50hypothetical protein [Synechococcus sp. PCC 7335][more]
WP_096828617.11.500e-1342.98cytochrome C6 [Tychonema bourrellyi] >PHX54284.1 c... [more]
OBQ30939.11.900e-1342.61cytochrome C6 [Aphanizomenon flos-aquae MDT14a][more]
OBQ21988.14.300e-1341.74cytochrome C6 [Anabaena sp. WA113][more]
XP_005704623.19.500e-1337.80peroxisomal membrane MPV17/PMP22-like protein isof... [more]
OBQ20127.19.500e-1341.74cytochrome C6 [Aphanizomenon flos-aquae LD13][more]
OSX80300.19.500e-1341.35hypothetical protein BU14_0055s0023 [Porphyra umbi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003377NSK003377Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04730.1NO05G04730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100008g137gene2636Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04730.1NO05G04730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04730 ID=NO05G04730|Name=NO05G04730|organism=Nannochloropsis oceanica|type=gene|length=763bp
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTATCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCACTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGgtaggtgcttgg
gaggaaggaggaacgcggaaagtgagagatggatggataaatggtttggt
agggacgtatggtgtctccgactttttctgcgtcggacctctatatctat
tacatattgtgggcatgcatcccgtttattcttgaccctcttacaccctt
ccttctcctccttccctccctccctccctcccttcctcagATACGCCCGC
GGGAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCG
GGCCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTTATGCCTAAGT
ACGGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCG
GAGCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGC
CGGGTGGAAGTAG
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protein sequence of NO05G04730.1

>NO05G04730.1-protein ID=NO05G04730.1-protein|Name=NO05G04730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MLPTTRRFSCTISLLFVLLCISTTSSTAFFLSSSTPQPGPQPAVTRTALS
ATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENN
CASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKY
GSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK*
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Synonyms
Publications