NO05G04730.1, NO05G04730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04730.1
Unique NameNO05G04730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length561
Alignment locationchr5:1231253..1232015 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1231253..1232015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04730.1 vs.
Match: XP_005854936.1 (cytochrome c6 [Nannochloropsis gaditana CCMP526]; EKU21424.1 cytochrome c6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.7 bits (522), Expect = 1.300e-49
Identity = 110/169 (65.09%), Postives = 126/169 (74.56%), Query Frame = 0 
Query:   18 LLCISTTSSTAFFLSSSTPQPGPQPAVTRTALSATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            LL +  + STAF L + TPQP    ++T +  S  PS +   +     W R AS LAL LLP+   SPA AFDAKG +LFENNCASCHV G NIIGYARGKTLKEEAL K K  +RA+IV++L +GKGVMPKY SYTRKNGDVVPAKL+EQEMG VADYVLEQAKAGWK
Sbjct:   19 LLSMCLSHSTAFILPARTPQPPKATSITTSTKSLAPSRTDPISRSQVKWYRVASVLALILLPTAHNSPAHAFDAKGARLFENNCASCHVAGTNIIGYARGKTLKEEALSKYKFNTRASIVNLLTEGKGVMPKYSSYTRKNGDVVPAKLTEQEMGQVADYVLEQAKAGWK 187
The following BLAST results are available for this feature:
BLAST of NO05G04730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854936.11.300e-4965.09cytochrome c6 [Nannochloropsis gaditana CCMP526]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04730NO05G04730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04730.1NO05G04730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04730.1.cds1NO05G04730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04730.1.cds2NO05G04730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04730.1 ID=NO05G04730.1|Name=NO05G04730.1|organism=Nannochloropsis oceanica|type=mRNA|length=561bp
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTATCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCACTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGATACGCCCGCGG
GAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCGGG
CCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTTATGCCTAAGTAC
GGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCGGA
GCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGCCG
GGTGGAAGTAG
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protein sequence of NO05G04730.1

>NO05G04730.1-protein ID=NO05G04730.1-protein|Name=NO05G04730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MLPTTRRFSCTISLLFVLLCISTTSSTAFFLSSSTPQPGPQPAVTRTALS
ATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENN
CASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKY
GSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK*
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mRNA from alignment at chr5:1231253..1232015+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04730.1 ID=NO05G04730.1|Name=NO05G04730.1|organism=Nannochloropsis oceanica|type=mRNA|length=763bp|location=Sequence derived from alignment at chr5:1231253..1232015+ (Nannochloropsis oceanica)
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTATCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCACTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGGTAGGTGCTTGG
GAGGAAGGAGGAACGCGGAAAGTGAGAGATGGATGGATAAATGGTTTGGT
AGGGACGTATGGTGTCTCCGACTTTTTCTGCGTCGGACCTCTATATCTAT
TACATATTGTGGGCATGCATCCCGTTTATTCTTGACCCTCTTACACCCTT
CCTTCTCCTCCTTCCCTCCCTCCCTCCCTCCCTTCCTCAGATACGCCCGC
GGGAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCG
GGCCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTTATGCCTAAGT
ACGGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCG
GAGCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGC
CGGGTGGAAGTAG
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Coding sequence (CDS) from alignment at chr5:1231253..1232015+

>NO05G04730.1 ID=NO05G04730.1|Name=NO05G04730.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr5:1231253..1232015+ (Nannochloropsis oceanica)
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTATCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCACTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGATACGCCCGCGG
GAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCGGG
CCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTTATGCCTAAGTAC
GGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCGGA
GCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGCCG
GGTGGAAGTAG
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Synonyms
Publications