NO05G04720, NO05G04720 (gene) Nannochloropsis oceanica

Overview
NameNO05G04720
Unique NameNO05G04720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2388
Alignment locationchr5:1228606..1230993 -

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Properties
Property NameValue
DescriptionGeneral transcription factor iih subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1228606..1230993 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000439transcription factor TFIIH core complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004003ATP-dependent DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004598TFIIH_p52/Tfb2
Homology
BLAST of NO05G04720 vs. NCBI_GenBank
Match: EWM28029.1 (general transcription factor iih subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 384.0 bits (985), Expect = 8.900e-103
Identity = 223/376 (59.31%), Postives = 273/376 (72.61%), Query Frame = 0
Query:   26 ATVFDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEPRFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRK--TSRGKEGPTYTLNARFRRNLRAALSSHFAGPWS---EAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRFVEYVISHEEASRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQR 397
            ATVFDLL TLPRISLDRLYG +     A+SS +PS++P+PWTCRAVFQSL+PLAKQYVMRLLCL EGV  + L+SWVEPRF+  H++A+ +L+ LRIL S   XXXXXXXXX   G  +    +G+  P Y LN  FR+NL+AAL++  AGPWS     E           +L   +LE+YMC KWNGVLH+LVGA   GF +PAEEV++FL DTGMMAVPE              XXXXXXXX     V M++ EG  GK+ G+  R+LRITNAGIDFLLKDVH+QVWRFV YVI+HE ASRD+ILTFLFQLSYC +G  YPV AL+P Q+ LL+KF SFGLI++ + +S  FYPTAVAVNLIFG T+Q+++ +R
Sbjct:   21 ATVFDLLGTLPRISLDRLYGLEDLG-SASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDXXXXXXXXXXXXGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPE-------------EXXXXXXXXXXXXXVLMEV-EGTMGKE-GKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRR 380          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_005854932.1 (transcription initiation factor TFIIH subunit 4, partial [Nannochloropsis gaditana CCMP526] >EKU21420.1 transcription initiation factor TFIIH subunit 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 304.3 bits (778), Expect = 9.000e-79
Identity = 159/221 (71.95%), Postives = 183/221 (82.81%), Query Frame = 0
Query:  339 GHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            G  YPV AL+P Q+ LL+KF SFGLI++ + +S  FYPTAVAVNLIFG T+Q+++ +R     G  GP      G    KE+RLVDPSQL+VIVETNYQLVAYT SSLHVEMLRIF DVRCRLPNVVIGFITRAS+RRAMA+GITA TILSFLK+HTH AVRA KGRL+PENVEAQIELWHQER+RVKFEEVMMIDL+ L  +++E+VR YAENLAVVCWA
Sbjct:    1 GRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGH---GHVGP-----EGRENTKELRLVDPSQLAVIVETNYQLVAYTSSSLHVEMLRIFTDVRCRLPNVVIGFITRASVRRAMASGITAATILSFLKTHTHVAVRAGKGRLLPENVEAQIELWHQERSRVKFEEVMMIDLSSLMVEEFEEVRTYAENLAVVCWA 213          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_009518278.1 (hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae] >EGZ22990.1 hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae])

HSP 1 Score: 293.9 bits (751), Expect = 1.200e-75
Identity = 195/543 (35.91%), Postives = 274/543 (50.46%), Query Frame = 0
Query:   29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRR-NLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPS-QLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            FD LETLP  +L+RLY                    PW C+A+FQ+L PLA+Q+VMRLL     V  +LLE WV P      R  P    A+HKLE L++                   + +    +  PT+       +  L  ALS+    PW             T     A LE Y  A+W+ VLH++VG+     +EP + V   L  T ++                                          +  G  +R L IT+ G +F+LKD+H+Q+W F +EY+ + +      ++DIL FLFQ+SYC+ G  Y VA LT  Q  LL  F  FGL+F+   NS RFY T++AVNLIFG +  Q++    S  +  AG   G+      P++    D S QL V+VETN+++ AYT S+LHV ML +F D+  RLPN+ IGFITR S+R A+  GI+A+ I  FL  H HP +R R   ++PEN+  QI LW +ER RV+F E ++ D    T++DYE VR YA++L V+ W+
Sbjct:    4 FDFLETLPPATLERLY------------------QDPWACQAIFQALPPLAQQFVMRLLPSNAAVPRSLLEQWVVPEPGDANRMPPQFHAALHKLEGLKVF------------------VHQDGAYRPHPTFQKQLMVEKWLLTYALSNLGGSPWERGRLQLPKDPENT--FAAADLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTRLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSSFAGVRAGLKSQVADPRQAPTADHSAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-RNSPVIPENIADQIYLWERERNRVQFMEGILFDGFN-TKEDYESVRDYAKDLKVLTWS 461          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: ETI47585.1 (hypothetical protein F443_08221 [Phytophthora parasitica P1569] >ETK87522.1 hypothetical protein L915_08050 [Phytophthora parasitica] >ETL40951.1 hypothetical protein L916_07973 [Phytophthora parasitica] >ETL94096.1 hypothetical protein L917_07875 [Phytophthora parasitica] >ETM47338.1 hypothetical protein L914_07936 [Phytophthora parasitica] >ETO76301.1 hypothetical protein F444_08279 [Phytophthora parasitica P1976] >ETP17383.1 hypothetical protein F441_08200 [Phytophthora parasitica CJ01A1] >ETP45438.1 hypothetical protein F442_08161 [Phytophthora parasitica P10297] >KUF87608.1 RNA polymerase II transcription factor B subunit 2 [Phytophthora nicotianae])

HSP 1 Score: 292.0 bits (746), Expect = 4.600e-75
Identity = 194/542 (35.79%), Postives = 270/542 (49.82%), Query Frame = 0
Query:   29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            FD LETLP  +L+RLY                    PW C+A+FQ+L PLA+Q+VMRLL     V   LLE WV P      R  P    A+ KLE LR+                          ++   Y  +  F++ L  ALS+    PW             T       LE Y  A+W+ VLH++VG+     +EP + V   L  T ++                                          +  G  +R L IT+ G +F+LKD+H+Q+W F +EY+ + +      ++DIL FLFQ+SYC+ G  Y VA LT  Q  LL  F  FGL+F+   NS RFY T++AVNLIFG +  Q++    S  +  AG   GM      P++   VD  +QL V+VETN+++ AYT S+LHV ML +F D+  RLPN+ IGFITR S+R A+  GI+A+ I  FL  H HP +R     ++PEN+  QI LW +ER RV+F E ++ D    T++DYE VR YA+ L V+ W+
Sbjct:    4 FDFLETLPTATLERLY------------------QDPWACQAIFQALPPLAQQFVMRLLPTNAAVPRELLEQWVVPLPGEAKRMPPQFHAALQKLEGLRVFV------------------------QQDGGYRPHPTFQKQLMYALSNLGGSPWERGRLHLPKDPDNT--FAAVDLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-HNSPVIPENIADQIYLWERERNRVQFMEGILFDGFN-TKEDYESVRDYAKGLKVLTWS 454          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_008904983.1 (hypothetical protein PPTG_11423 [Phytophthora parasitica INRA-310] >ETN09837.1 hypothetical protein PPTG_11423 [Phytophthora parasitica INRA-310])

HSP 1 Score: 291.2 bits (744), Expect = 7.800e-75
Identity = 194/542 (35.79%), Postives = 270/542 (49.82%), Query Frame = 0
Query:   29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            FD LETLP  +L+RLY                    PW C+A+FQ+L PLA+Q+VMRLL     V   LLE WV P      R  P    A+ KLE LR+                          ++   Y  +  F++ L  ALS+    PW             T       LE Y  A+W+ VLH++VG+     +EP + V   L  T ++                                          +  G  +R L IT+ G +F+LKD+H+Q+W F +EY+ + +      ++DIL FLFQ+SYC+ G  Y VA LT  Q  LL  F  FGL+F+   NS RFY T++AVNLIFG +  Q++    S  +  AG   GM      P++   VD  +QL V+VETN+++ AYT S+LHV ML +F D+  RLPN+ IGFITR S+R A+  GI+A+ I  FL  H HP +R     ++PEN+  QI LW +ER RV+F E ++ D    T++DYE VR YA+ L V+ W+
Sbjct:    4 FDFLETLPTATLERLY------------------QDPWACQAIFQALPPLAQQFVMRLLPTNAAVPRELLEQWVVPLPGEAKRMPPQFHAALQKLEGLRVFV------------------------QQDGGYRPHPTFQKQLMYALSNLGGSPWERGRLHLPKDPDNT--FAAVDLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSPFAGVRAGMKSQVADPRQAPTVDHGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-HNSPVIPENIADQIYLWERERNRVQFMEGILFDGFN-TKEDYESVRDYAKGLKVLTWS 454          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: CBJ48998.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 288.9 bits (738), Expect = 3.900e-74
Identity = 191/559 (34.17%), Postives = 278/559 (49.73%), Query Frame = 0
Query:    8 LASSSSLSSP--ISSSPATSATVFDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEPRFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRFVEYVIS----HEEASRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWAS 561
            + SSS+   P  ++S+   S  VFD LE LP  +LD+LYG      D     S       WTCRA+ QSL  LAKQ+VMRLL +E  V   +L+SWV+  +  +H  ++ KL SLR+L                      S G  G  Y LN  FR NL+ AL +    PW                 T A++E  M ++W  VL+FLVG+ E G   P   V +F+ ++G+M                                            RGR A  LRIT+ G +F+LK+ H+Q W  V  +I+     +   RD++L FLFQLSYC++G +YP+ ALT  Q  L Q F   GL+FK +  S+RFYPT++AVNLIFG++                                       + +IVETN+Q++AYT S LH  ML +F ++R  LPN ++G ITR S+R+A++TGI  + +L FLK H HP VR R+  +VPEN+  Q+ LW +ER R++  + +++D++  + D +  +  +A     + W+S
Sbjct:    1 MESSSNPGPPGLLASATTMSLNVFDYLERLPPDALDKLYGAAPPAADGQGGRSHGQ----WTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLL--------------------PSAG--GQEYQLNPPFRENLQRALCASDKTPWQ----GDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMR-----------------------------------------PVRGRGA--LRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSS------PSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVR-RRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLWSS 479          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_002898428.1 (general transcription factor IIH subunit, putative [Phytophthora infestans T30-4] >EEY63251.1 general transcription factor IIH subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 288.5 bits (737), Expect = 5.100e-74
Identity = 195/542 (35.98%), Postives = 272/542 (50.18%), Query Frame = 0
Query:   29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            FD LETLP  +L+RLY                    PW C+A+FQ+L  LA+Q+VMRLL     V   LLE WV P      R  P    A+ KLE LR+                   +++    K  PT      F++ L  ALS+    PW             T       LE Y  A+W+ VLH++VG+     +EP + V   L  T ++                                          +  G  +R L IT+ G +F+LKD+H+Q+W F +EY+ + +      ++DIL FLFQ+SYC+ G  Y VA LT  Q  LL  F  FGL+F+   NS RFY T++AVNLIFG +  Q++    S  +  AG   GM      P++   VD  ++L V+VETN+++ AYT S+LHV ML +F D+  RLPN+ IGFITR S+R A+  GI+A+ I  FL  H HP +R R   ++PEN+  QI LW +ER RV+F E ++ D    T++DYE VR YA+ L V+ W+
Sbjct:    4 FDFLETLPPATLERLY------------------QDPWACQAIFQALPSLAQQFVMRLLPTNSAVPRDLLEQWVVPIPGETKRMPPQFNAALQKLEGLRVF------------------VQQDGGYKPHPT------FQKQLMYALSNLGGSPWERGRLHLPRDPENT--FAAVDLERYARARWDLVLHYMVGST--AVQEPPQSVVDILLRTKLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRQNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-RNSPVIPENIADQIYLWERERNRVQFLEGILFDGFN-TKEDYESVRDYAKGLMVLTWS 454          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_024581255.1 (general transcription factor iih [Plasmopara halstedii] >CEG44886.1 general transcription factor iih [Plasmopara halstedii])

HSP 1 Score: 287.3 bits (734), Expect = 1.100e-73
Identity = 194/542 (35.79%), Postives = 269/542 (49.63%), Query Frame = 0
Query:   29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            F+ LETLP  +L+RLY                    PW C+AVFQ+L PLA+Q+VMRLL     V   LLE WV P         P    A+HKL+ LR+                          +E   Y  +  F++ L  ALS+    PW             T       LE Y  A+W+ VLH++VG+     +EP + V   L  T ++   E                                            +R L IT+ G +F+LKD+H+Q+W F +EY+ + +      ++DIL FLFQLSYC+ G  Y VA LT  Q+ LL  F  FGL+F+   NS RFY T++AVNLIFG +  Q++       +  AG   G+      P+   ++D  +QL V+VETN+++ AYT S+LHV ML +F D+  RLPN+ IGFITR S+R A+  GI+A+ I  FL  H HP +R +   +VPEN+  QI LW +ER RV+F E ++ D    T++DYE V  YA NL V+ WA
Sbjct:    4 FEFLETLPAATLERLY------------------QDPWACQAVFQALPPLAQQFVMRLLPTNTSVPRDLLEKWVVPLPGDSHEMPPQFNAALHKLDGLRVFI------------------------QENGGYRPHPLFQKQLMYALSNLGGSPWERGRLRLPKDPENT--FAAKDLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLLQSSE------------------------------------------ADSRALHITDTGYEFMLKDIHVQMWTFMLEYIRTLDNTGTLKQEDILQFLFQLSYCQTGGYYAVADLTQTQQLLLGDFIDFGLLFRKRSNSDRFYTTSLAVNLIFGGSKGQER-SHVRLTSSFAGVRAGVKSQVTNPRLTPVLDHEAQLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLVKHAHPKMR-QNTPIVPENIADQIYLWERERNRVQFIEGILFDGFN-TKEDYESVCDYARNLDVLTWA 454          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: GAY00657.1 (general transcription factor IIH subunit putative [Pythium insidiosum])

HSP 1 Score: 266.2 bits (679), Expect = 2.700e-67
Identity = 188/568 (33.10%), Postives = 270/568 (47.54%), Query Frame = 0
Query:   28 VFDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP-------------------------------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEI-LTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            VF+ LETLP  +LD LY       DA            W C+AVFQSL PLA+Q VMRLL  +  V+ + LE W+ P                               +  P    A+ +L  LR+L+ P                          ++ L  RF+R LR ALSS    PW             TE   +P +LE +  ++W+ VLHF+VG+      EP + V   L  T +M                                           ++  + R L IT+ G +F+LKDVH+Q+W F +EY+ + + A    +DDIL FL QLSYC+   +YPVAALTP Q+ LL  F +FGL+++  +NS+ FY T++AVNL+FG    +                   L     P++       +L VIVETN ++ AYT S+LHV ML +F D+  RLPN+ +GFITR S+R A+  GI+A+ I  FL  H HP +R R+  ++PEN+  QI LW +ER RV+F +  + D    ++D++E V  +A +   V W+
Sbjct:    3 VFEFLETLPSDTLDVLYE------DA------------WVCQAVFQSLPPLAQQXVMRLLTWDGPVALSTLEEWIHPLAISGPSAADXXXXXXXXXXXXXXSGQQAPRKMPPEFHHALQRLTKLRVLWQPTP-----------------------SSFQLPFRFQRQLRLALSSLGGSPWERG-----VDQDPTEXEFSPLELERFSRSRWDAVLHFMVGST--AVAEPPQSVVDILLRTRLM-------------------------------------------RQSPETRALHITDTGYEFMLKDVHVQLWIFLLEYIRTLDRAGALQQDDILRFLMQLSYCKTNAAYPVAALTPTQKLLLGDFTNFGLLYRHRLNSTHFYTTSLAVNLVFGGRQTRSXAHXXXXXXXXXXXKQLALEPSSEPED-------RLQVIVETNXKVYAYTTSTLHVAMLSVFVDIVARLPNLAVGFITRESLRSALIHGISAQQIYDFLVQHAHPRMRTRQ-PILPENIADQIYLWERERNRVRFVDGWLFD-GFTSKDEFEQVLAFARSKDCVTWS 470          
BLAST of NO05G04720 vs. NCBI_GenBank
Match: OWY99301.1 (General transcription factor IIH subunit [Phytophthora megakarya])

HSP 1 Score: 263.8 bits (673), Expect = 1.300e-66
Identity = 186/546 (34.07%), Postives = 265/546 (48.53%), Query Frame = 0
Query:   29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNAR----FRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560
            FD LETLP  +L+RLY                    PW C+A+FQ+L PLA+Q+VMRLL     V   LL  WV P      R  P    ++ KLE LR+                   + +    +  PT+         +   L+ ALS+    PW +           T   T A LE+Y  ++W+ VLH++VG+     +EP + V   L                                                         LR      +F+LKD+H+Q+W F +EY+ + +      ++DIL FLFQ+SYC+ G  Y VA LT  Q  LL  F  FGL+F+   NS RFY T++AVNLIFG +  Q++    +  +  AG   G+      P++   VD  +QL V+VETN+++ AYT S+LH+ ML +F D+  RLPN+ IGFITR S+R A+  GI+A+ I  FL  H HP +R     ++PEN+  QI LW +ER RV F + ++ D    T+DDYE+VR YA+NL V+ W+
Sbjct:    4 FDFLETLPTATLERLYA------------------DPWACQAIFQALPPLAQQFVMRLLASNAAVPRELLSQWVVPEPGEEKRMPPQFHASLQKLEGLRVF------------------VDQDGAYRPHPTFQKQLMKMLIYCLLLQYALSNLGGSPWEQGRLHLPKDPENT--FTAADLETYARSRWDSVLHYMVGST--AVQEPPQSVVDIL---------------------------------------------------------LR-----YEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTDTQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVNLTSSFAGVRAGIKSQVD-PRQAPAVDHGAQLLVVVETNFKIYAYTTSTLHIAMLSVFVDIVARLPNMAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-HNTPVIPENIADQIYLWERERNRVNFIDGILFDGFN-TKDDYENVRDYAKNLKVLTWS 443          
The following BLAST results are available for this feature:
BLAST of NO05G04720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28029.18.900e-10359.31general transcription factor iih subunit 4 [Nannoc... [more]
XP_005854932.19.000e-7971.95transcription initiation factor TFIIH subunit 4, p... [more]
XP_009518278.11.200e-7535.91hypothetical protein PHYSODRAFT_479459 [Phytophtho... [more]
ETI47585.14.600e-7535.79hypothetical protein F443_08221 [Phytophthora para... [more]
XP_008904983.17.800e-7535.79hypothetical protein PPTG_11423 [Phytophthora para... [more]
CBJ48998.13.900e-7434.17conserved unknown protein [Ectocarpus siliculosus][more]
XP_002898428.15.100e-7435.98general transcription factor IIH subunit, putative... [more]
XP_024581255.11.100e-7335.79general transcription factor iih [Plasmopara halst... [more]
GAY00657.12.700e-6733.10general transcription factor IIH subunit putative ... [more]
OWY99301.11.300e-6634.07General transcription factor IIH subunit [Phytopht... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003378NSK003378Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04720.1NO05G04720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553921gene_3289Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g136gene2635Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04720.1NO05G04720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04720 ID=NO05G04720|Name=NO05G04720|organism=Nannochloropsis oceanica|type=gene|length=2388bp
ACCACAGGTTCTGGAAAAAAGAGAGCATAAGTTCACAGCCATGGCAACGG
TGCAGCGGGAGCTAAAAGCTAAGGACCATTTGTTTACTCTTTCCTCGCCC
TAGTGGCCTCGTAGCCTCCCCTCATGAAGGCCGCCGCCAGCATTCTTGCC
TCCTCCTCCTCCCTCTCCTCCCCCATCTCCTCCTCCCCTGCCACATCAGC
CACCGTCTTTGACTTGCTTGAGACCCTCCCACGCATCTCCCTTGACCGAC
TCTATGGCTTCCAAAGCAGCAACTGTGATGCCGCATCCTCCTCCTCCCCG
TCCTCCAACCCCTACCCTTGGACGTGCCGCGCCGTCTTTCAGTCCTTGTC
CCCCTTGGCCAAACAATACGTCATGCGCCTCCTATGTTTAGAGGAAGGGG
TCTCTTACACGCTCTTGGAAAGCTGGGTGGAGCCGCGATTTCTCCCTTTG
CACCGACGGGCAATTCACAAATTGGAAAGCCTGCGAATTTTGTACAGCCC
GGAGGAGGAAGAGGAGGAGAACGACGACGAGGAAGTTTACGAGGGAATAC
GTAAGACGAGCCGTGGGAAGGAGGGACCGACCTATACACTGAATGCTCGC
TTTCGAAGGAATTTACGGGCGGCGTTATCGAGTCATTTTGCGGGGCCGTG
GAGTGAGGCGGAGAGCAGCAGCAGCAGCAGCAGCACTGGAACGGAGATTC
TGACACCGGCTCAATTGGAGAGTTACATGTGCGCAAAATGGAACGGAGTG
TTGCATTTCCTGGTGGGGGCGAGAGAGGGCGGGTTTGAGGAGCCGGCGGA
GGAAGTGCAGAGGTTCTTGAGAGACACGGGCATGATGGCCGTGCCTGAAA
ACGAGGAGGAGGAGGAGGAGGAGGAGGACGGCGGAAGGGATGAATACGAG
GAGGGGGAAGACGAGGGCGAGAGTTTGGTGGTGTCGATGAAGATAGATGA
AGGGAGGAGGGGGAAGAAGAGGGGGAGGAAGGCAAGGAACTTGCGGATCA
CGAATGCAGGAATCGATTTTCTGTTGAAAGATGTGCATATTCAGGTGTGG
CGTTTCGTGGAATACGTCATCTCGCACGAAGAGGCCTCAAGAGACGACAT
CCTCACTTTTTTGTTCCAACTCTCGTACTGTCGCATTGGCCATTCCTATC
CCGTGGCTGCCTTGACCCCCGCACAAGAAACCTTGCTTCAGAAATTTGCG
TCATTCGGTCTGATTTTTAAAGGGGAAATAAACTCATCTCGATTTTATCC
AACGGCTGTGGCCGTCAATTTGATTTTTGGGGCCACCATGCAGCAGCAGC
AGTATCAGAGGGCGTCGGCGGTGGCAGGGAGGGCCGGGCCGGTGGGGGGA
ATGCTTGGTGGGGGGGGTATGCCTAAGgtacgtttatgatatggaaggga
gtggtgttatgttggataagaattctgcttctgtagcagtgtgagtcgtt
tgggagagagggagaagagaattggtggtgggctgtgaagcaccagctcg
tggctgacacgtatccctcactccacacgcggcaaaatcatcttctcact
tgtccgcccccctccttcctctcctccctccctctctgtctccctctctt
agGAAATTCGCCTTGTGGATCCCTCCCAGCTTTCTGTCATTGTCGAAACC
AACTACCAACTCGTGGCCTACACTTTCTCATCCCTACACGTTGAGATGCT
GCGCATTTTCGCTGATGTCCGCTGCCGGCTGCCGAACGTGGTGATTGGAT
TTATCACGCGCGCAAGTATTCGGAGGGCCATGGCAACGGGGATCACCGCC
AAGACGATTCTCTCGTTTCTGAAGAGTCACACCCACCCGGCAGTAAGGGC
GAGAAAGGGCAGACTCGTGCCTGAAAATGTGGAGGCCCAAATTGAGTTGT
GGCACCAAGAGAGGGCGCGGGTGAAGTTTGAGGAAGTGATGATGATTGAC
CTGACGAGGCTGACGGAGGACGATTACGAGGATGTGAGGCGGTACGCGGA
AAATTTGGCGGTGGTGTGTTGGGCGAGTAGGAGGAGGGTGGGGAAGGATG
GGGAAGAAGAGAACGAAGAGGAGGAAGAAGAGCAACAACAAGAAGAGGAT
GAGGAGGAGGAGGAGAATGGAGGAGGGGTGGGGATAAGTGCGGGATGGGG
AAGGCGGCGGCGGAGGAGGAAGAAGTTGTTGGCGGTGCGTCCCGAGGCAT
TGGAACGCATCCGAGCCTTTGTGGAGGACCGAGGGTACACACACCACGAG
CAGCGAGGACGAAGATGAAGAGAAGGGAGGGGGAGAGAGGAGAAGAGAGC
AGCATAGACTCGTCGGCAGAAATGAGTGATGACAATCACAATCGATGAAT
GCGAAATAAAAGGAAAAAAGCTTGTCGTGGGAATTGAC
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protein sequence of NO05G04720.1

>NO05G04720.1-protein ID=NO05G04720.1-protein|Name=NO05G04720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MKAAASILASSSSLSSPISSSPATSATVFDLLETLPRISLDRLYGFQSSN
CDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLES
WVEPRFLPLHRRAIHKLESLRILYSPEEEEEENDDEEVYEGIRKTSRGKE
GPTYTLNARFRRNLRAALSSHFAGPWSEAESSSSSSSTGTEILTPAQLES
YMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPENEEEEEEE
EDGGRDEYEEGEDEGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFL
LKDVHIQVWRFVEYVISHEEASRDDILTFLFQLSYCRIGHSYPVAALTPA
QETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAV
AGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEM
LRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVR
ARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYA
ENLAVVCWASRRRVGKDGEEENEEEEEEQQQEEDEEEEENGGGVGISAGW
GRRRRRRKKLLAVRPEALERIRAFVEDRGYTHHEQRGRR*
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Synonyms
Publications