NO05G04720, NO05G04720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04720 vs. NCBI_GenBank
Match: EWM28029.1 (general transcription factor iih subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 384.0 bits (985), Expect = 8.900e-103 Identity = 223/376 (59.31%), Postives = 273/376 (72.61%), Query Frame = 0 Query: 26 ATVFDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEPRFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRK--TSRGKEGPTYTLNARFRRNLRAALSSHFAGPWS---EAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRFVEYVISHEEASRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQR 397 ATVFDLL TLPRISLDRLYG + A+SS +PS++P+PWTCRAVFQSL+PLAKQYVMRLLCL EGV + L+SWVEPRF+ H++A+ +L+ LRIL S XXXXXXXXX G + +G+ P Y LN FR+NL+AAL++ AGPWS E +L +LE+YMC KWNGVLH+LVGA GF +PAEEV++FL DTGMMAVPE XXXXXXXX V M++ EG GK+ G+ R+LRITNAGIDFLLKDVH+QVWRFV YVI+HE ASRD+ILTFLFQLSYC +G YPV AL+P Q+ LL+KF SFGLI++ + +S FYPTAVAVNLIFG T+Q+++ +R Sbjct: 21 ATVFDLLGTLPRISLDRLYGLEDLG-SASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDXXXXXXXXXXXXGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPE-------------EXXXXXXXXXXXXXVLMEV-EGTMGKE-GKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRR 380
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_005854932.1 (transcription initiation factor TFIIH subunit 4, partial [Nannochloropsis gaditana CCMP526] >EKU21420.1 transcription initiation factor TFIIH subunit 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 304.3 bits (778), Expect = 9.000e-79 Identity = 159/221 (71.95%), Postives = 183/221 (82.81%), Query Frame = 0 Query: 339 GHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 G YPV AL+P Q+ LL+KF SFGLI++ + +S FYPTAVAVNLIFG T+Q+++ +R G GP G KE+RLVDPSQL+VIVETNYQLVAYT SSLHVEMLRIF DVRCRLPNVVIGFITRAS+RRAMA+GITA TILSFLK+HTH AVRA KGRL+PENVEAQIELWHQER+RVKFEEVMMIDL+ L +++E+VR YAENLAVVCWA Sbjct: 1 GRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGH---GHVGP-----EGRENTKELRLVDPSQLAVIVETNYQLVAYTSSSLHVEMLRIFTDVRCRLPNVVIGFITRASVRRAMASGITAATILSFLKTHTHVAVRAGKGRLLPENVEAQIELWHQERSRVKFEEVMMIDLSSLMVEEFEEVRTYAENLAVVCWA 213
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_009518278.1 (hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae] >EGZ22990.1 hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae]) HSP 1 Score: 293.9 bits (751), Expect = 1.200e-75 Identity = 195/543 (35.91%), Postives = 274/543 (50.46%), Query Frame = 0 Query: 29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRR-NLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPS-QLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 FD LETLP +L+RLY PW C+A+FQ+L PLA+Q+VMRLL V +LLE WV P R P A+HKLE L++ + + + PT+ + L ALS+ PW T A LE Y A+W+ VLH++VG+ +EP + V L T ++ + G +R L IT+ G +F+LKD+H+Q+W F +EY+ + + ++DIL FLFQ+SYC+ G Y VA LT Q LL F FGL+F+ NS RFY T++AVNLIFG + Q++ S + AG G+ P++ D S QL V+VETN+++ AYT S+LHV ML +F D+ RLPN+ IGFITR S+R A+ GI+A+ I FL H HP +R R ++PEN+ QI LW +ER RV+F E ++ D T++DYE VR YA++L V+ W+ Sbjct: 4 FDFLETLPPATLERLY------------------QDPWACQAIFQALPPLAQQFVMRLLPSNAAVPRSLLEQWVVPEPGDANRMPPQFHAALHKLEGLKVF------------------VHQDGAYRPHPTFQKQLMVEKWLLTYALSNLGGSPWERGRLQLPKDPENT--FAAADLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTRLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSSFAGVRAGLKSQVADPRQAPTADHSAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-RNSPVIPENIADQIYLWERERNRVQFMEGILFDGFN-TKEDYESVRDYAKDLKVLTWS 461
BLAST of NO05G04720 vs. NCBI_GenBank
Match: ETI47585.1 (hypothetical protein F443_08221 [Phytophthora parasitica P1569] >ETK87522.1 hypothetical protein L915_08050 [Phytophthora parasitica] >ETL40951.1 hypothetical protein L916_07973 [Phytophthora parasitica] >ETL94096.1 hypothetical protein L917_07875 [Phytophthora parasitica] >ETM47338.1 hypothetical protein L914_07936 [Phytophthora parasitica] >ETO76301.1 hypothetical protein F444_08279 [Phytophthora parasitica P1976] >ETP17383.1 hypothetical protein F441_08200 [Phytophthora parasitica CJ01A1] >ETP45438.1 hypothetical protein F442_08161 [Phytophthora parasitica P10297] >KUF87608.1 RNA polymerase II transcription factor B subunit 2 [Phytophthora nicotianae]) HSP 1 Score: 292.0 bits (746), Expect = 4.600e-75 Identity = 194/542 (35.79%), Postives = 270/542 (49.82%), Query Frame = 0 Query: 29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 FD LETLP +L+RLY PW C+A+FQ+L PLA+Q+VMRLL V LLE WV P R P A+ KLE LR+ ++ Y + F++ L ALS+ PW T LE Y A+W+ VLH++VG+ +EP + V L T ++ + G +R L IT+ G +F+LKD+H+Q+W F +EY+ + + ++DIL FLFQ+SYC+ G Y VA LT Q LL F FGL+F+ NS RFY T++AVNLIFG + Q++ S + AG GM P++ VD +QL V+VETN+++ AYT S+LHV ML +F D+ RLPN+ IGFITR S+R A+ GI+A+ I FL H HP +R ++PEN+ QI LW +ER RV+F E ++ D T++DYE VR YA+ L V+ W+ Sbjct: 4 FDFLETLPTATLERLY------------------QDPWACQAIFQALPPLAQQFVMRLLPTNAAVPRELLEQWVVPLPGEAKRMPPQFHAALQKLEGLRVFV------------------------QQDGGYRPHPTFQKQLMYALSNLGGSPWERGRLHLPKDPDNT--FAAVDLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-HNSPVIPENIADQIYLWERERNRVQFMEGILFDGFN-TKEDYESVRDYAKGLKVLTWS 454
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_008904983.1 (hypothetical protein PPTG_11423 [Phytophthora parasitica INRA-310] >ETN09837.1 hypothetical protein PPTG_11423 [Phytophthora parasitica INRA-310]) HSP 1 Score: 291.2 bits (744), Expect = 7.800e-75 Identity = 194/542 (35.79%), Postives = 270/542 (49.82%), Query Frame = 0 Query: 29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 FD LETLP +L+RLY PW C+A+FQ+L PLA+Q+VMRLL V LLE WV P R P A+ KLE LR+ ++ Y + F++ L ALS+ PW T LE Y A+W+ VLH++VG+ +EP + V L T ++ + G +R L IT+ G +F+LKD+H+Q+W F +EY+ + + ++DIL FLFQ+SYC+ G Y VA LT Q LL F FGL+F+ NS RFY T++AVNLIFG + Q++ S + AG GM P++ VD +QL V+VETN+++ AYT S+LHV ML +F D+ RLPN+ IGFITR S+R A+ GI+A+ I FL H HP +R ++PEN+ QI LW +ER RV+F E ++ D T++DYE VR YA+ L V+ W+ Sbjct: 4 FDFLETLPTATLERLY------------------QDPWACQAIFQALPPLAQQFVMRLLPTNAAVPRELLEQWVVPLPGEAKRMPPQFHAALQKLEGLRVFV------------------------QQDGGYRPHPTFQKQLMYALSNLGGSPWERGRLHLPKDPDNT--FAAVDLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSPFAGVRAGMKSQVADPRQAPTVDHGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-HNSPVIPENIADQIYLWERERNRVQFMEGILFDGFN-TKEDYESVRDYAKGLKVLTWS 454
BLAST of NO05G04720 vs. NCBI_GenBank
Match: CBJ48998.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 288.9 bits (738), Expect = 3.900e-74 Identity = 191/559 (34.17%), Postives = 278/559 (49.73%), Query Frame = 0 Query: 8 LASSSSLSSP--ISSSPATSATVFDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEPRFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRFVEYVIS----HEEASRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWAS 561 + SSS+ P ++S+ S VFD LE LP +LD+LYG D S WTCRA+ QSL LAKQ+VMRLL +E V +L+SWV+ + +H ++ KL SLR+L S G G Y LN FR NL+ AL + PW T A++E M ++W VL+FLVG+ E G P V +F+ ++G+M RGR A LRIT+ G +F+LK+ H+Q W V +I+ + RD++L FLFQLSYC++G +YP+ ALT Q L Q F GL+FK + S+RFYPT++AVNLIFG++ + +IVETN+Q++AYT S LH ML +F ++R LPN ++G ITR S+R+A++TGI + +L FLK H HP VR R+ +VPEN+ Q+ LW +ER R++ + +++D++ + D + + +A + W+S Sbjct: 1 MESSSNPGPPGLLASATTMSLNVFDYLERLPPDALDKLYGAAPPAADGQGGRSHGQ----WTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLL--------------------PSAG--GQEYQLNPPFRENLQRALCASDKTPWQ----GDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMR-----------------------------------------PVRGRGA--LRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSS------PSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVR-RRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLWSS 479
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_002898428.1 (general transcription factor IIH subunit, putative [Phytophthora infestans T30-4] >EEY63251.1 general transcription factor IIH subunit, putative [Phytophthora infestans T30-4]) HSP 1 Score: 288.5 bits (737), Expect = 5.100e-74 Identity = 195/542 (35.98%), Postives = 272/542 (50.18%), Query Frame = 0 Query: 29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 FD LETLP +L+RLY PW C+A+FQ+L LA+Q+VMRLL V LLE WV P R P A+ KLE LR+ +++ K PT F++ L ALS+ PW T LE Y A+W+ VLH++VG+ +EP + V L T ++ + G +R L IT+ G +F+LKD+H+Q+W F +EY+ + + ++DIL FLFQ+SYC+ G Y VA LT Q LL F FGL+F+ NS RFY T++AVNLIFG + Q++ S + AG GM P++ VD ++L V+VETN+++ AYT S+LHV ML +F D+ RLPN+ IGFITR S+R A+ GI+A+ I FL H HP +R R ++PEN+ QI LW +ER RV+F E ++ D T++DYE VR YA+ L V+ W+ Sbjct: 4 FDFLETLPPATLERLY------------------QDPWACQAIFQALPSLAQQFVMRLLPTNSAVPRDLLEQWVVPIPGETKRMPPQFNAALQKLEGLRVF------------------VQQDGGYKPHPT------FQKQLMYALSNLGGSPWERGRLHLPRDPENT--FAAVDLERYARARWDLVLHYMVGST--AVQEPPQSVVDILLRTKLL------------------------------------------QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRQNSDRFYTTSLAVNLIFGGSTGQKR-SHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-RNSPVIPENIADQIYLWERERNRVQFLEGILFDGFN-TKEDYESVRDYAKGLMVLTWS 454
BLAST of NO05G04720 vs. NCBI_GenBank
Match: XP_024581255.1 (general transcription factor iih [Plasmopara halstedii] >CEG44886.1 general transcription factor iih [Plasmopara halstedii]) HSP 1 Score: 287.3 bits (734), Expect = 1.100e-73 Identity = 194/542 (35.79%), Postives = 269/542 (49.63%), Query Frame = 0 Query: 29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 F+ LETLP +L+RLY PW C+AVFQ+L PLA+Q+VMRLL V LLE WV P P A+HKL+ LR+ +E Y + F++ L ALS+ PW T LE Y A+W+ VLH++VG+ +EP + V L T ++ E +R L IT+ G +F+LKD+H+Q+W F +EY+ + + ++DIL FLFQLSYC+ G Y VA LT Q+ LL F FGL+F+ NS RFY T++AVNLIFG + Q++ + AG G+ P+ ++D +QL V+VETN+++ AYT S+LHV ML +F D+ RLPN+ IGFITR S+R A+ GI+A+ I FL H HP +R + +VPEN+ QI LW +ER RV+F E ++ D T++DYE V YA NL V+ WA Sbjct: 4 FEFLETLPAATLERLY------------------QDPWACQAVFQALPPLAQQFVMRLLPTNTSVPRDLLEKWVVPLPGDSHEMPPQFNAALHKLDGLRVFI------------------------QENGGYRPHPLFQKQLMYALSNLGGSPWERGRLRLPKDPENT--FAAKDLERYARARWDSVLHYMVGST--AVQEPPQSVVDILLRTKLLQSSE------------------------------------------ADSRALHITDTGYEFMLKDIHVQMWTFMLEYIRTLDNTGTLKQEDILQFLFQLSYCQTGGYYAVADLTQTQQLLLGDFIDFGLLFRKRSNSDRFYTTSLAVNLIFGGSKGQER-SHVRLTSSFAGVRAGVKSQVTNPRLTPVLDHEAQLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLVKHAHPKMR-QNTPIVPENIADQIYLWERERNRVQFIEGILFDGFN-TKEDYESVCDYARNLDVLTWA 454
BLAST of NO05G04720 vs. NCBI_GenBank
Match: GAY00657.1 (general transcription factor IIH subunit putative [Pythium insidiosum]) HSP 1 Score: 266.2 bits (679), Expect = 2.700e-67 Identity = 188/568 (33.10%), Postives = 270/568 (47.54%), Query Frame = 0 Query: 28 VFDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP-------------------------------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEI-LTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 VF+ LETLP +LD LY DA W C+AVFQSL PLA+Q VMRLL + V+ + LE W+ P + P A+ +L LR+L+ P ++ L RF+R LR ALSS PW TE +P +LE + ++W+ VLHF+VG+ EP + V L T +M ++ + R L IT+ G +F+LKDVH+Q+W F +EY+ + + A +DDIL FL QLSYC+ +YPVAALTP Q+ LL F +FGL+++ +NS+ FY T++AVNL+FG + L P++ +L VIVETN ++ AYT S+LHV ML +F D+ RLPN+ +GFITR S+R A+ GI+A+ I FL H HP +R R+ ++PEN+ QI LW +ER RV+F + + D ++D++E V +A + V W+ Sbjct: 3 VFEFLETLPSDTLDVLYE------DA------------WVCQAVFQSLPPLAQQXVMRLLTWDGPVALSTLEEWIHPLAISGPSAADXXXXXXXXXXXXXXSGQQAPRKMPPEFHHALQRLTKLRVLWQPTP-----------------------SSFQLPFRFQRQLRLALSSLGGSPWERG-----VDQDPTEXEFSPLELERFSRSRWDAVLHFMVGST--AVAEPPQSVVDILLRTRLM-------------------------------------------RQSPETRALHITDTGYEFMLKDVHVQLWIFLLEYIRTLDRAGALQQDDILRFLMQLSYCKTNAAYPVAALTPTQKLLLGDFTNFGLLYRHRLNSTHFYTTSLAVNLVFGGRQTRSXAHXXXXXXXXXXXKQLALEPSSEPED-------RLQVIVETNXKVYAYTTSTLHVAMLSVFVDIVARLPNLAVGFITRESLRSALIHGISAQQIYDFLVQHAHPRMRTRQ-PILPENIADQIYLWERERNRVRFVDGWLFD-GFTSKDEFEQVLAFARSKDCVTWS 470
BLAST of NO05G04720 vs. NCBI_GenBank
Match: OWY99301.1 (General transcription factor IIH subunit [Phytophthora megakarya]) HSP 1 Score: 263.8 bits (673), Expect = 1.300e-66 Identity = 186/546 (34.07%), Postives = 265/546 (48.53%), Query Frame = 0 Query: 29 FDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEP------RFLPLHRRAIHKLESLRILYSPXXXXXXXXXXXVYEGIRKTSRGKEGPTYTLNAR----FRRNLRAALSSHFAGPWSEAEXXXXXXXXGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPEXXXXXXXXXXXXXXXXXXXXXXGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRF-VEYVISHEEA---SRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAVAGRAGPVGGMLGGGGMPKEIRLVD-PSQLSVIVETNYQLVAYTFSSLHVEMLRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVRARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYAENLAVVCWA 560 FD LETLP +L+RLY PW C+A+FQ+L PLA+Q+VMRLL V LL WV P R P ++ KLE LR+ + + + PT+ + L+ ALS+ PW + T T A LE+Y ++W+ VLH++VG+ +EP + V L LR +F+LKD+H+Q+W F +EY+ + + ++DIL FLFQ+SYC+ G Y VA LT Q LL F FGL+F+ NS RFY T++AVNLIFG + Q++ + + AG G+ P++ VD +QL V+VETN+++ AYT S+LH+ ML +F D+ RLPN+ IGFITR S+R A+ GI+A+ I FL H HP +R ++PEN+ QI LW +ER RV F + ++ D T+DDYE+VR YA+NL V+ W+ Sbjct: 4 FDFLETLPTATLERLYA------------------DPWACQAIFQALPPLAQQFVMRLLASNAAVPRELLSQWVVPEPGEEKRMPPQFHASLQKLEGLRVF------------------VDQDGAYRPHPTFQKQLMKMLIYCLLLQYALSNLGGSPWEQGRLHLPKDPENT--FTAADLETYARSRWDSVLHYMVGST--AVQEPPQSVVDIL---------------------------------------------------------LR-----YEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTDTQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKR-SHVNLTSSFAGVRAGIKSQVD-PRQAPAVDHGAQLLVVVETNFKIYAYTTSTLHIAMLSVFVDIVARLPNMAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMR-HNTPVIPENIADQIYLWERERNRVNFIDGILFDGFN-TKDDYENVRDYAKNLKVLTWS 443 The following BLAST results are available for this feature:
BLAST of NO05G04720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04720 ID=NO05G04720|Name=NO05G04720|organism=Nannochloropsis oceanica|type=gene|length=2388bpback to top protein sequence of NO05G04720.1 >NO05G04720.1-protein ID=NO05G04720.1-protein|Name=NO05G04720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bpback to top Synonyms
Publications
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