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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1228606..1230993 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04720.1 vs.
Match: EWM28029.1 (general transcription factor iih subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 407.1 bits (1045), Expect = 9.800e-110 Identity = 221/376 (58.78%), Postives = 276/376 (73.40%), Query Frame = 0
Query: 26 ATVFDLLETLPRISLDRLYGFQSSNCDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLESWVEPRFLPLHRRAIHKLESLRILYSPEEE--EEENDDEEVYEGIRKTSRGKEGPTYTLNARFRRNLRAALSSHFAGPWSEA---ESSSSSSSTGTEILTPAQLESYMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPENEEEEEEEEDGGRDEYEEGEDEGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFLLKDVHIQVWRFVEYVISHEEASRDDILTFLFQLSYCRIGHSYPVAALTPAQETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQR 397
ATVFDLL TLPRISLDRLYG + A+SS +PS++P+PWTCRAVFQSL+PLAKQYVMRLLCL EGV + L+SWVEPRF+ H++A+ +L+ LRIL S E+E EE+ DD G +G+ P Y LN FR+NL+AAL++ AGPWS E ++ + +L +LE+YMC KWNGVLH+LVGA GF +PAEEV++FL DTGMMAVPE +E EEGE EGE VV M++ EG GK+ G+ R+LRITNAGIDFLLKDVH+QVWRFV YVI+HE ASRD+ILTFLFQLSYC +G YPV AL+P Q+ LL+KF SFGLI++ + +S FYPTAVAVNLIFG T+Q+++ +R
Sbjct: 21 ATVFDLLGTLPRISLDRLYGLEDLG-SASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPE-------------EEGEEGEGEGEGDVVLMEV-EGTMGKE-GKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRR 380
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04720.1 ID=NO05G04720.1|Name=NO05G04720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp
ACCACAGGTTCTGGAAAAAAGAGAGCATAAGTTCACAGCCATGGCAACGG
TGCAGCGGGAGCTAAAAGCTAAGGACCATTTGTTTACTCTTTCCTCGCCC
TAGTGGCCTCGTAGCCTCCCCTCATGAAGGCCGCCGCCAGCATTCTTGCC
TCCTCCTCCTCCCTCTCCTCCCCCATCTCCTCCTCCCCTGCCACATCAGC
CACCGTCTTTGACTTGCTTGAGACCCTCCCACGCATCTCCCTTGACCGAC
TCTATGGCTTCCAAAGCAGCAACTGTGATGCCGCATCCTCCTCCTCCCCG
TCCTCCAACCCCTACCCTTGGACGTGCCGCGCCGTCTTTCAGTCCTTGTC
CCCCTTGGCCAAACAATACGTCATGCGCCTCCTATGTTTAGAGGAAGGGG
TCTCTTACACGCTCTTGGAAAGCTGGGTGGAGCCGCGATTTCTCCCTTTG
CACCGACGGGCAATTCACAAATTGGAAAGCCTGCGAATTTTGTACAGCCC
GGAGGAGGAAGAGGAGGAGAACGACGACGAGGAAGTTTACGAGGGAATAC
GTAAGACGAGCCGTGGGAAGGAGGGACCGACCTATACACTGAATGCTCGC
TTTCGAAGGAATTTACGGGCGGCGTTATCGAGTCATTTTGCGGGGCCGTG
GAGTGAGGCGGAGAGCAGCAGCAGCAGCAGCAGCACTGGAACGGAGATTC
TGACACCGGCTCAATTGGAGAGTTACATGTGCGCAAAATGGAACGGAGTG
TTGCATTTCCTGGTGGGGGCGAGAGAGGGCGGGTTTGAGGAGCCGGCGGA
GGAAGTGCAGAGGTTCTTGAGAGACACGGGCATGATGGCCGTGCCTGAAA
ACGAGGAGGAGGAGGAGGAGGAGGAGGACGGCGGAAGGGATGAATACGAG
GAGGGGGAAGACGAGGGCGAGAGTTTGGTGGTGTCGATGAAGATAGATGA
AGGGAGGAGGGGGAAGAAGAGGGGGAGGAAGGCAAGGAACTTGCGGATCA
CGAATGCAGGAATCGATTTTCTGTTGAAAGATGTGCATATTCAGGTGTGG
CGTTTCGTGGAATACGTCATCTCGCACGAAGAGGCCTCAAGAGACGACAT
CCTCACTTTTTTGTTCCAACTCTCGTACTGTCGCATTGGCCATTCCTATC
CCGTGGCTGCCTTGACCCCCGCACAAGAAACCTTGCTTCAGAAATTTGCG
TCATTCGGTCTGATTTTTAAAGGGGAAATAAACTCATCTCGATTTTATCC
AACGGCTGTGGCCGTCAATTTGATTTTTGGGGCCACCATGCAGCAGCAGC
AGTATCAGAGGGCGTCGGCGGTGGCAGGGAGGGCCGGGCCGGTGGGGGGA
ATGCTTGGTGGGGGGGGTATGCCTAAGGAAATTCGCCTTGTGGATCCCTC
CCAGCTTTCTGTCATTGTCGAAACCAACTACCAACTCGTGGCCTACACTT
TCTCATCCCTACACGTTGAGATGCTGCGCATTTTCGCTGATGTCCGCTGC
CGGCTGCCGAACGTGGTGATTGGATTTATCACGCGCGCAAGTATTCGGAG
GGCCATGGCAACGGGGATCACCGCCAAGACGATTCTCTCGTTTCTGAAGA
GTCACACCCACCCGGCAGTAAGGGCGAGAAAGGGCAGACTCGTGCCTGAA
AATGTGGAGGCCCAAATTGAGTTGTGGCACCAAGAGAGGGCGCGGGTGAA
GTTTGAGGAAGTGATGATGATTGACCTGACGAGGCTGACGGAGGACGATT
ACGAGGATGTGAGGCGGTACGCGGAAAATTTGGCGGTGGTGTGTTGGGCG
AGTAGGAGGAGGGTGGGGAAGGATGGGGAAGAAGAGAACGAAGAGGAGGA
AGAAGAGCAACAACAAGAAGAGGATGAGGAGGAGGAGGAGAATGGAGGAG
GGGTGGGGATAAGTGCGGGATGGGGAAGGCGGCGGCGGAGGAGGAAGAAG
TTGTTGGCGGTGCGTCCCGAGGCATTGGAACGCATCCGAGCCTTTGTGGA
GGACCGAGGGTACACACACCACGAGCAGCGAGGACGAAGATGAAGAGAAG
GGAGGGGGAGAGAGGAGAAGAGAGCAGCATAGACTCGTCGGCAGAAATGA
GTGATGACAATCACAATCGATGAATGCGAAATAAAAGGAAAAAAGCTTGT
CGTGGGAATTGAC back to topprotein sequence of NO05G04720.1 >NO05G04720.1-protein ID=NO05G04720.1-protein|Name=NO05G04720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MKAAASILASSSSLSSPISSSPATSATVFDLLETLPRISLDRLYGFQSSN
CDAASSSSPSSNPYPWTCRAVFQSLSPLAKQYVMRLLCLEEGVSYTLLES
WVEPRFLPLHRRAIHKLESLRILYSPEEEEEENDDEEVYEGIRKTSRGKE
GPTYTLNARFRRNLRAALSSHFAGPWSEAESSSSSSSTGTEILTPAQLES
YMCAKWNGVLHFLVGAREGGFEEPAEEVQRFLRDTGMMAVPENEEEEEEE
EDGGRDEYEEGEDEGESLVVSMKIDEGRRGKKRGRKARNLRITNAGIDFL
LKDVHIQVWRFVEYVISHEEASRDDILTFLFQLSYCRIGHSYPVAALTPA
QETLLQKFASFGLIFKGEINSSRFYPTAVAVNLIFGATMQQQQYQRASAV
AGRAGPVGGMLGGGGMPKEIRLVDPSQLSVIVETNYQLVAYTFSSLHVEM
LRIFADVRCRLPNVVIGFITRASIRRAMATGITAKTILSFLKSHTHPAVR
ARKGRLVPENVEAQIELWHQERARVKFEEVMMIDLTRLTEDDYEDVRRYA
ENLAVVCWASRRRVGKDGEEENEEEEEEQQQEEDEEEEENGGGVGISAGW
GRRRRRRKKLLAVRPEALERIRAFVEDRGYTHHEQRGRR* back to topmRNA from alignment at chr5:1228606..1230993- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04720.1 ID=NO05G04720.1|Name=NO05G04720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2388bp|location=Sequence derived from alignment at chr5:1228606..1230993- (Nannochloropsis oceanica)
ACCACAGGTTCTGGAAAAAAGAGAGCATAAGTTCACAGCCATGGCAACGG
TGCAGCGGGAGCTAAAAGCTAAGGACCATTTGTTTACTCTTTCCTCGCCC
TAGTGGCCTCGTAGCCTCCCCTCATGAAGGCCGCCGCCAGCATTCTTGCC
TCCTCCTCCTCCCTCTCCTCCCCCATCTCCTCCTCCCCTGCCACATCAGC
CACCGTCTTTGACTTGCTTGAGACCCTCCCACGCATCTCCCTTGACCGAC
TCTATGGCTTCCAAAGCAGCAACTGTGATGCCGCATCCTCCTCCTCCCCG
TCCTCCAACCCCTACCCTTGGACGTGCCGCGCCGTCTTTCAGTCCTTGTC
CCCCTTGGCCAAACAATACGTCATGCGCCTCCTATGTTTAGAGGAAGGGG
TCTCTTACACGCTCTTGGAAAGCTGGGTGGAGCCGCGATTTCTCCCTTTG
CACCGACGGGCAATTCACAAATTGGAAAGCCTGCGAATTTTGTACAGCCC
GGAGGAGGAAGAGGAGGAGAACGACGACGAGGAAGTTTACGAGGGAATAC
GTAAGACGAGCCGTGGGAAGGAGGGACCGACCTATACACTGAATGCTCGC
TTTCGAAGGAATTTACGGGCGGCGTTATCGAGTCATTTTGCGGGGCCGTG
GAGTGAGGCGGAGAGCAGCAGCAGCAGCAGCAGCACTGGAACGGAGATTC
TGACACCGGCTCAATTGGAGAGTTACATGTGCGCAAAATGGAACGGAGTG
TTGCATTTCCTGGTGGGGGCGAGAGAGGGCGGGTTTGAGGAGCCGGCGGA
GGAAGTGCAGAGGTTCTTGAGAGACACGGGCATGATGGCCGTGCCTGAAA
ACGAGGAGGAGGAGGAGGAGGAGGAGGACGGCGGAAGGGATGAATACGAG
GAGGGGGAAGACGAGGGCGAGAGTTTGGTGGTGTCGATGAAGATAGATGA
AGGGAGGAGGGGGAAGAAGAGGGGGAGGAAGGCAAGGAACTTGCGGATCA
CGAATGCAGGAATCGATTTTCTGTTGAAAGATGTGCATATTCAGGTGTGG
CGTTTCGTGGAATACGTCATCTCGCACGAAGAGGCCTCAAGAGACGACAT
CCTCACTTTTTTGTTCCAACTCTCGTACTGTCGCATTGGCCATTCCTATC
CCGTGGCTGCCTTGACCCCCGCACAAGAAACCTTGCTTCAGAAATTTGCG
TCATTCGGTCTGATTTTTAAAGGGGAAATAAACTCATCTCGATTTTATCC
AACGGCTGTGGCCGTCAATTTGATTTTTGGGGCCACCATGCAGCAGCAGC
AGTATCAGAGGGCGTCGGCGGTGGCAGGGAGGGCCGGGCCGGTGGGGGGA
ATGCTTGGTGGGGGGGGTATGCCTAAGGTACGTTTATGATATGGAAGGGA
GTGGTGTTATGTTGGATAAGAATTCTGCTTCTGTAGCAGTGTGAGTCGTT
TGGGAGAGAGGGAGAAGAGAATTGGTGGTGGGCTGTGAAGCACCAGCTCG
TGGCTGACACGTATCCCTCACTCCACACGCGGCAAAATCATCTTCTCACT
TGTCCGCCCCCCTCCTTCCTCTCCTCCCTCCCTCTCTGTCTCCCTCTCTT
AGGAAATTCGCCTTGTGGATCCCTCCCAGCTTTCTGTCATTGTCGAAACC
AACTACCAACTCGTGGCCTACACTTTCTCATCCCTACACGTTGAGATGCT
GCGCATTTTCGCTGATGTCCGCTGCCGGCTGCCGAACGTGGTGATTGGAT
TTATCACGCGCGCAAGTATTCGGAGGGCCATGGCAACGGGGATCACCGCC
AAGACGATTCTCTCGTTTCTGAAGAGTCACACCCACCCGGCAGTAAGGGC
GAGAAAGGGCAGACTCGTGCCTGAAAATGTGGAGGCCCAAATTGAGTTGT
GGCACCAAGAGAGGGCGCGGGTGAAGTTTGAGGAAGTGATGATGATTGAC
CTGACGAGGCTGACGGAGGACGATTACGAGGATGTGAGGCGGTACGCGGA
AAATTTGGCGGTGGTGTGTTGGGCGAGTAGGAGGAGGGTGGGGAAGGATG
GGGAAGAAGAGAACGAAGAGGAGGAAGAAGAGCAACAACAAGAAGAGGAT
GAGGAGGAGGAGGAGAATGGAGGAGGGGTGGGGATAAGTGCGGGATGGGG
AAGGCGGCGGCGGAGGAGGAAGAAGTTGTTGGCGGTGCGTCCCGAGGCAT
TGGAACGCATCCGAGCCTTTGTGGAGGACCGAGGGTACACACACCACGAG
CAGCGAGGACGAAGATGAAGAGAAGGGAGGGGGAGAGAGGAGAAGAGAGC
AGCATAGACTCGTCGGCAGAAATGAGTGATGACAATCACAATCGATGAAT
GCGAAATAAAAGGAAAAAAGCTTGTCGTGGGAATTGAC back to topCoding sequence (CDS) from alignment at chr5:1228606..1230993- >NO05G04720.1 ID=NO05G04720.1|Name=NO05G04720.1|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at chr5:1228606..1230993- (Nannochloropsis oceanica)
ATGAAGGCCGCCGCCAGCATTCTTGCCTCCTCCTCCTCCCTCTCCTCCCC
CATCTCCTCCTCCCCTGCCACATCAGCCACCGTCTTTGACTTGCTTGAGA
CCCTCCCACGCATCTCCCTTGACCGACTCTATGGCTTCCAAAGCAGCAAC
TGTGATGCCGCATCCTCCTCCTCCCCGTCCTCCAACCCCTACCCTTGGAC
GTGCCGCGCCGTCTTTCAGTCCTTGTCCCCCTTGGCCAAACAATACGTCA
TGCGCCTCCTATGTTTAGAGGAAGGGGTCTCTTACACGCTCTTGGAAAGC
TGGGTGGAGCCGCGATTTCTCCCTTTGCACCGACGGGCAATTCACAAATT
GGAAAGCCTGCGAATTTTGTACAGCCCGGAGGAGGAAGAGGAGGAGAACG
ACGACGAGGAAGTTTACGAGGGAATACGTAAGACGAGCCGTGGGAAGGAG
GGACCGACCTATACACTGAATGCTCGCTTTCGAAGGAATTTACGGGCGGC
GTTATCGAGTCATTTTGCGGGGCCGTGGAGTGAGGCGGAGAGCAGCAGCA
GCAGCAGCAGCACTGGAACGGAGATTCTGACACCGGCTCAATTGGAGAGT
TACATGTGCGCAAAATGGAACGGAGTGTTGCATTTCCTGGTGGGGGCGAG
AGAGGGCGGGTTTGAGGAGCCGGCGGAGGAAGTGCAGAGGTTCTTGAGAG
ACACGGGCATGATGGCCGTGCCTGAAAACGAGGAGGAGGAGGAGGAGGAG
GAGGACGGCGGAAGGGATGAATACGAGGAGGGGGAAGACGAGGGCGAGAG
TTTGGTGGTGTCGATGAAGATAGATGAAGGGAGGAGGGGGAAGAAGAGGG
GGAGGAAGGCAAGGAACTTGCGGATCACGAATGCAGGAATCGATTTTCTG
TTGAAAGATGTGCATATTCAGGTGTGGCGTTTCGTGGAATACGTCATCTC
GCACGAAGAGGCCTCAAGAGACGACATCCTCACTTTTTTGTTCCAACTCT
CGTACTGTCGCATTGGCCATTCCTATCCCGTGGCTGCCTTGACCCCCGCA
CAAGAAACCTTGCTTCAGAAATTTGCGTCATTCGGTCTGATTTTTAAAGG
GGAAATAAACTCATCTCGATTTTATCCAACGGCTGTGGCCGTCAATTTGA
TTTTTGGGGCCACCATGCAGCAGCAGCAGTATCAGAGGGCGTCGGCGGTG
GCAGGGAGGGCCGGGCCGGTGGGGGGAATGCTTGGTGGGGGGGGTATGCC
TAAGGAAATTCGCCTTGTGGATCCCTCCCAGCTTTCTGTCATTGTCGAAA
CCAACTACCAACTCGTGGCCTACACTTTCTCATCCCTACACGTTGAGATG
CTGCGCATTTTCGCTGATGTCCGCTGCCGGCTGCCGAACGTGGTGATTGG
ATTTATCACGCGCGCAAGTATTCGGAGGGCCATGGCAACGGGGATCACCG
CCAAGACGATTCTCTCGTTTCTGAAGAGTCACACCCACCCGGCAGTAAGG
GCGAGAAAGGGCAGACTCGTGCCTGAAAATGTGGAGGCCCAAATTGAGTT
GTGGCACCAAGAGAGGGCGCGGGTGAAGTTTGAGGAAGTGATGATGATTG
ACCTGACGAGGCTGACGGAGGACGATTACGAGGATGTGAGGCGGTACGCG
GAAAATTTGGCGGTGGTGTGTTGGGCGAGTAGGAGGAGGGTGGGGAAGGA
TGGGGAAGAAGAGAACGAAGAGGAGGAAGAAGAGCAACAACAAGAAGAGG
ATGAGGAGGAGGAGGAGAATGGAGGAGGGGTGGGGATAAGTGCGGGATGG
GGAAGGCGGCGGCGGAGGAGGAAGAAGTTGTTGGCGGTGCGTCCCGAGGC
ATTGGAACGCATCCGAGCCTTTGTGGAGGACCGAGGGTACACACACCACG
AGCAGCGAGGACGAAGATGA back to top
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