NO05G04630, NO05G04630 (gene) Nannochloropsis oceanica

Overview
NameNO05G04630
Unique NameNO05G04630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2204
Alignment locationchr5:1206906..1209109 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1206906..1209109 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Homology
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BLAST of NO05G04630 vs. NCBI_GenBank
Match: XP_005855720.1 (hypothetical protein NGA_0606400 [Nannochloropsis gaditana CCMP526] >EKU20642.1 hypothetical protein NGA_0606400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 225.7 bits (574), Expect = 1.500e-55
Identity = 171/214 (79.91%), Postives = 179/214 (83.64%), Query Frame = 0 
Query:   24 LLLAPTAV-GYVTLRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHTDTGLLIKNYRPLPPSDDDPLDVRCALLHISARKALKSGKMEIARRFYELFLFQWKGYRTENAIAHTYFLWALLEQRAKDYTKARRLFQEATERYPTHARLLQXXXXXXXXXXXXXXXXXXXXXXXXXDKSLEPVLKWKMWGLPPATAXXXXXXXTAGTAAPGAVG 237
            LLL P  V GYVTLRP             XXXXXXXXXXXXXXX  V +D+GL+IKNYRPLPPSD+DPLDVRCALLHISARKA+KSGKMEIARRFYELFLF+WKGYRTENAIAHTYFLWALLEQRA+DY+KARRLFQEAT RYPTHARL  XXXXXXXXXXXXXXXXXXXXXX   DKSLEPVLKWKMWGL PA  XXXXXXX     AP AVG
Sbjct:   26 LLLNPMPVDGYVTLRP----PSLSSMTRPXXXXXXXXXXXXXXXNVVISDSGLMIKNYRPLPPSDNDPLDVRCALLHISARKAIKSGKMEIARRFYELFLFKWKGYRTENAIAHTYFLWALLEQRAEDYSKARRLFQEATARYPTHARLXXXXXXXXXXXXXXXXXXXXXXXXVEHDKSLEPVLKWKMWGLSPAEXXXXXXXXXXXXXAPRAVG 235
The following BLAST results are available for this feature:
BLAST of NO05G04630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855720.11.500e-5579.91hypothetical protein NGA_0606400 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003392NSK003392Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04630.1NO05G04630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585186gene_3279Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04630.1NO05G04630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04630 ID=NO05G04630|Name=NO05G04630|organism=Nannochloropsis oceanica|type=gene|length=2204bp
CAACTGCTCCTTGACAATCTCGAGCGACAGCTGTTTTCTGGAGTGTCGAC
GTCAAAGATTGTCATGAGAGTCTTGTGCCTTTCGATAGGGCGACCTCCAA
TTCGATTTTCACAATCGATATGGTCATGTGCATATGTGCGCCTAAGTCCA
AGATGCGGACACCTGGTCGTCGCAATTGCGACTTGGCTAGGAAGCAGACT
CTCACTCTCAGTTAACGGCCGGACGTGTGCCGCCAGCACACGCCGTATAA
ATGTGGGCCGGAGGCACGAGCAGGCTTGTGAAGAAATTCGTGTCCTTTGT
CTTTTGCCTTTTGTTCGTTTCTTTTATCATGTGTGTGTGTGCTTTCCTTT
GTAAGCCTTCGCATGCCGTGATGTGCACGCCATGACCTCCTGCCACATTC
TGTAGGCCCCTGCCTCTAGCCTCCGCTGCTTTCCTTCGGCAGCTCAAAAG
CGTGGAAACCCCGGGCAGGTCGATATCGTGTGCGCCCTACGTCCCCAGGC
TTTCAAGGGAACTACAAAATAATCACTGTAGCACATTGTTACGAAATGCA
ACAGGCCACCTTGCGTCCTCGTTGACACCGCAACCACCACACCGAACCCC
GCTGAAGGCAAAGGGTCAAGGAACGTGTCAACTAGTTTTCCGCCGTGCCA
CACGCCCTCACTTCACATTTTTCTATACACGCCACGCACCAAATAAAGAC
AGATATTGCTGCTGTGATCGTATACCAATCACCTACCATAACTATGCCTA
TCACTACTGCCTGCCTGTCTCGTCGCCTGTTCAGGGCTGCCACGGCAACT
GCCATATGCTGCTTGCTTCTGGCACCTACGGCCGTCGGGTATGTCACACT
GCGCCCTCCCTGTGCATCCAGCATGACCCGCGCGTCCCTTTCGTCTTCCC
CTCCCTCGTCCACGGCCACCTCCTCCTCCCGCTCCTCGAGCAACGTTGTC
CATACTGACACGGGCCTTCTCATTAAGAATTACCGCCCCTTGCCTCCTTC
CGACGACGACCCACTCGACGTGCGCTGTGCCCTGCTGCACATCTCCGCCC
GGAAGGCCCTTAAATCTGGCAAGATGGAAATCGCAAGAAGGTTCTACGAG
CTCTTTCTCTTTCAATGGAAGGGGTATCGGACCGAGAATGCGATTGCACA
CACCTACTTCCTGTGGGCCTTGCTCGAGCAACGCGCTAAGGATTACACCA
AGGCCCGCCGGCTCTTTCAGGAAGCCACTGAGCGGTACCCTACCCATGCT
CGTCTTCTTCAGGCTTGGGCATTGATGGAATCCAAGTGTGGCAAGTTAGA
AGAAGCGCAACGACTGATCAAGGAAGCGGTGGAGAATGACAAGAGCTTGG
AGCCCGTATTGAAATGGAAAATGTGGGGATTGCCCCCCGCAACGGCCGCG
GCCGCGGCTGCCATTGTAACTGCTGGAACAGCAGCGCCCGGGGCAGTAGG
TATTGTCTGAAAGGATGGGAGGGGTAGAAGGAGGGTTGAGGGTGTGGTTT
TAGGGACTTAAGATGAGGGGACTGTGGGTAGATGTCGGTACACGCCGTGT
ACATGCTTCCTTTTTGGTTAGATACCTGTATATATGAACATAAGGATGAA
AAATGGTGAGAAAGGAGTATGCAGCACCGAGCAAAAATAGGAATTTTAAG
GGGATGGCAGAAACACACAAGAGAGGACAGTTGAGAGAGTTTGAATAACG
GTTTCGATTGAACGCAGGCACCAGTGCCTTTCGCACGCGGTGGTTCACAA
CAAGAGAGAGAAAAGAGCAAGGCGGTGGCAGAAGTTGAATGGACCAATGG
TGCGACATCCCATCCACCACTTGCATGTGTAGATGTGTGCGTGCGCATCT
TCTGTATCAGGCGATTTCATACATGTCGACCACCACCAACATTTCTTCCA
GCCCCACGTCCCACGCACGTACGTATCGAACGTACCGGTTTTTGAATTCG
TTTTAGGAAGTGGGAGATTCGGTCCCATCGCGTTCGCATTTGATTATACT
ATCGACGTGACAACAATAACATCTTCAATGCTATGAACGTAGTCAGGCGG
CGGGGAGCTAGGCTACACTACAATTTAGTCTGGGGACGGGTGAGTTCAGA
CCACCACCGATTGCCTTGGTGAGAATGGAGAAGAGTGTGCAACAGAGCAA
GAGGACATTTGATAGAAATAGGTATTAAAAGACGTGTAAAAGTGCAATTA
AAAG
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protein sequence of NO05G04630.1

>NO05G04630.1-protein ID=NO05G04630.1-protein|Name=NO05G04630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MPITTACLSRRLFRAATATAICCLLLAPTAVGYVTLRPPCASSMTRASLS
SSPPSSTATSSSRSSSNVVHTDTGLLIKNYRPLPPSDDDPLDVRCALLHI
SARKALKSGKMEIARRFYELFLFQWKGYRTENAIAHTYFLWALLEQRAKD
YTKARRLFQEATERYPTHARLLQAWALMESKCGKLEEAQRLIKEAVENDK
SLEPVLKWKMWGLPPATAAAAAAIVTAGTAAPGAVGIV*
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Synonyms
Publications