NO05G04630.1, NO05G04630.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04630.1
Unique Name	NO05G04630.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2204
Alignment location	chr5:1206906..1209109 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1206906..1209109 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G04630.1 vs.
Match: XP_005855720.1 (hypothetical protein NGA_0606400 [Nannochloropsis gaditana CCMP526]; EKU20642.1 hypothetical protein NGA_0606400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 317.8 bits (813), Expect = 2.900e-83
Identity = 175/214 (81.78%), Postives = 188/214 (87.85%), Query Frame = 0

Query:   24 LLLAPTAV-GYVTLRPPCASSMTRASLSSSPPSSTATSSSRSSSNVVHTDTGLLIKNYRPLPPSDDDPLDVRCALLHISARKALKSGKMEIARRFYELFLFQWKGYRTENAIAHTYFLWALLEQRAKDYTKARRLFQEATERYPTHARLLQAWALMESKCGKLEEAQRLIKEAVENDKSLEPVLKWKMWGLPPATAAAAAAIVTAGTAAPGAVG 237
            LLL P  V GYVTLRPP  SSMTR S S   PSSTA ++S S+SNVV +D+GL+IKNYRPLPPSD+DPLDVRCALLHISARKA+KSGKMEIARRFYELFLF+WKGYRTENAIAHTYFLWALLEQRA+DY+KARRLFQEAT RYPTHARL QAWALMESKCGKLEEA+RLI  AVE+DKSLEPVLKWKMWGL PA AAAAA  V AG  AP AVG
Sbjct:   26 LLLNPMPVDGYVTLRPPSLSSMTRPSPS---PSSTA-AASVSASNVVISDSGLMIKNYRPLPPSDNDPLDVRCALLHISARKAIKSGKMEIARRFYELFLFKWKGYRTENAIAHTYFLWALLEQRAEDYSKARRLFQEATARYPTHARLFQAWALMESKCGKLEEARRLIASAVEHDKSLEPVLKWKMWGLSPAEAAAAAVAVAAGGGAPRAVG 235

The following BLAST results are available for this feature:

BLAST of NO05G04630.1 vs.

BLAST of NO05G04630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855720.1	2.900e-83	81.78	hypothetical protein NGA_0606400 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G04630	NO05G04630	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04630.1	NO05G04630.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04630.1.cds1	NO05G04630.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1206906..1209109-
coding sequence from alignment at chr5:1206906..1209109-

mRNA sequence

>NO05G04630.1 ID=NO05G04630.1|Name=NO05G04630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp
CAACTGCTCCTTGACAATCTCGAGCGACAGCTGTTTTCTGGAGTGTCGAC
GTCAAAGATTGTCATGAGAGTCTTGTGCCTTTCGATAGGGCGACCTCCAA
TTCGATTTTCACAATCGATATGGTCATGTGCATATGTGCGCCTAAGTCCA
AGATGCGGACACCTGGTCGTCGCAATTGCGACTTGGCTAGGAAGCAGACT
CTCACTCTCAGTTAACGGCCGGACGTGTGCCGCCAGCACACGCCGTATAA
ATGTGGGCCGGAGGCACGAGCAGGCTTGTGAAGAAATTCGTGTCCTTTGT
CTTTTGCCTTTTGTTCGTTTCTTTTATCATGTGTGTGTGTGCTTTCCTTT
GTAAGCCTTCGCATGCCGTGATGTGCACGCCATGACCTCCTGCCACATTC
TGTAGGCCCCTGCCTCTAGCCTCCGCTGCTTTCCTTCGGCAGCTCAAAAG
CGTGGAAACCCCGGGCAGGTCGATATCGTGTGCGCCCTACGTCCCCAGGC
TTTCAAGGGAACTACAAAATAATCACTGTAGCACATTGTTACGAAATGCA
ACAGGCCACCTTGCGTCCTCGTTGACACCGCAACCACCACACCGAACCCC
GCTGAAGGCAAAGGGTCAAGGAACGTGTCAACTAGTTTTCCGCCGTGCCA
CACGCCCTCACTTCACATTTTTCTATACACGCCACGCACCAAATAAAGAC
AGATATTGCTGCTGTGATCGTATACCAATCACCTACCATAACTATGCCTA
TCACTACTGCCTGCCTGTCTCGTCGCCTGTTCAGGGCTGCCACGGCAACT
GCCATATGCTGCTTGCTTCTGGCACCTACGGCCGTCGGGTATGTCACACT
GCGCCCTCCCTGTGCATCCAGCATGACCCGCGCGTCCCTTTCGTCTTCCC
CTCCCTCGTCCACGGCCACCTCCTCCTCCCGCTCCTCGAGCAACGTTGTC
CATACTGACACGGGCCTTCTCATTAAGAATTACCGCCCCTTGCCTCCTTC
CGACGACGACCCACTCGACGTGCGCTGTGCCCTGCTGCACATCTCCGCCC
GGAAGGCCCTTAAATCTGGCAAGATGGAAATCGCAAGAAGGTTCTACGAG
CTCTTTCTCTTTCAATGGAAGGGGTATCGGACCGAGAATGCGATTGCACA
CACCTACTTCCTGTGGGCCTTGCTCGAGCAACGCGCTAAGGATTACACCA
AGGCCCGCCGGCTCTTTCAGGAAGCCACTGAGCGGTACCCTACCCATGCT
CGTCTTCTTCAGGCTTGGGCATTGATGGAATCCAAGTGTGGCAAGTTAGA
AGAAGCGCAACGACTGATCAAGGAAGCGGTGGAGAATGACAAGAGCTTGG
AGCCCGTATTGAAATGGAAAATGTGGGGATTGCCCCCCGCAACGGCCGCG
GCCGCGGCTGCCATTGTAACTGCTGGAACAGCAGCGCCCGGGGCAGTAGG
TATTGTCTGAAAGGATGGGAGGGGTAGAAGGAGGGTTGAGGGTGTGGTTT
TAGGGACTTAAGATGAGGGGACTGTGGGTAGATGTCGGTACACGCCGTGT
ACATGCTTCCTTTTTGGTTAGATACCTGTATATATGAACATAAGGATGAA
AAATGGTGAGAAAGGAGTATGCAGCACCGAGCAAAAATAGGAATTTTAAG
GGGATGGCAGAAACACACAAGAGAGGACAGTTGAGAGAGTTTGAATAACG
GTTTCGATTGAACGCAGGCACCAGTGCCTTTCGCACGCGGTGGTTCACAA
CAAGAGAGAGAAAAGAGCAAGGCGGTGGCAGAAGTTGAATGGACCAATGG
TGCGACATCCCATCCACCACTTGCATGTGTAGATGTGTGCGTGCGCATCT
TCTGTATCAGGCGATTTCATACATGTCGACCACCACCAACATTTCTTCCA
GCCCCACGTCCCACGCACGTACGTATCGAACGTACCGGTTTTTGAATTCG
TTTTAGGAAGTGGGAGATTCGGTCCCATCGCGTTCGCATTTGATTATACT
ATCGACGTGACAACAATAACATCTTCAATGCTATGAACGTAGTCAGGCGG
CGGGGAGCTAGGCTACACTACAATTTAGTCTGGGGACGGGTGAGTTCAGA
CCACCACCGATTGCCTTGGTGAGAATGGAGAAGAGTGTGCAACAGAGCAA
GAGGACATTTGATAGAAATAGGTATTAAAAGACGTGTAAAAGTGCAATTA
AAAG

protein sequence of NO05G04630.1

>NO05G04630.1-protein ID=NO05G04630.1-protein|Name=NO05G04630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MPITTACLSRRLFRAATATAICCLLLAPTAVGYVTLRPPCASSMTRASLS
SSPPSSTATSSSRSSSNVVHTDTGLLIKNYRPLPPSDDDPLDVRCALLHI
SARKALKSGKMEIARRFYELFLFQWKGYRTENAIAHTYFLWALLEQRAKD
YTKARRLFQEATERYPTHARLLQAWALMESKCGKLEEAQRLIKEAVENDK
SLEPVLKWKMWGLPPATAAAAAAIVTAGTAAPGAVGIV*

mRNA from alignment at chr5:1206906..1209109-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G04630.1 ID=NO05G04630.1|Name=NO05G04630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp|location=Sequence derived from alignment at chr5:1206906..1209109- (Nannochloropsis oceanica)
CAACTGCTCCTTGACAATCTCGAGCGACAGCTGTTTTCTGGAGTGTCGAC
GTCAAAGATTGTCATGAGAGTCTTGTGCCTTTCGATAGGGCGACCTCCAA
TTCGATTTTCACAATCGATATGGTCATGTGCATATGTGCGCCTAAGTCCA
AGATGCGGACACCTGGTCGTCGCAATTGCGACTTGGCTAGGAAGCAGACT
CTCACTCTCAGTTAACGGCCGGACGTGTGCCGCCAGCACACGCCGTATAA
ATGTGGGCCGGAGGCACGAGCAGGCTTGTGAAGAAATTCGTGTCCTTTGT
CTTTTGCCTTTTGTTCGTTTCTTTTATCATGTGTGTGTGTGCTTTCCTTT
GTAAGCCTTCGCATGCCGTGATGTGCACGCCATGACCTCCTGCCACATTC
TGTAGGCCCCTGCCTCTAGCCTCCGCTGCTTTCCTTCGGCAGCTCAAAAG
CGTGGAAACCCCGGGCAGGTCGATATCGTGTGCGCCCTACGTCCCCAGGC
TTTCAAGGGAACTACAAAATAATCACTGTAGCACATTGTTACGAAATGCA
ACAGGCCACCTTGCGTCCTCGTTGACACCGCAACCACCACACCGAACCCC
GCTGAAGGCAAAGGGTCAAGGAACGTGTCAACTAGTTTTCCGCCGTGCCA
CACGCCCTCACTTCACATTTTTCTATACACGCCACGCACCAAATAAAGAC
AGATATTGCTGCTGTGATCGTATACCAATCACCTACCATAACTATGCCTA
TCACTACTGCCTGCCTGTCTCGTCGCCTGTTCAGGGCTGCCACGGCAACT
GCCATATGCTGCTTGCTTCTGGCACCTACGGCCGTCGGGTATGTCACACT
GCGCCCTCCCTGTGCATCCAGCATGACCCGCGCGTCCCTTTCGTCTTCCC
CTCCCTCGTCCACGGCCACCTCCTCCTCCCGCTCCTCGAGCAACGTTGTC
CATACTGACACGGGCCTTCTCATTAAGAATTACCGCCCCTTGCCTCCTTC
CGACGACGACCCACTCGACGTGCGCTGTGCCCTGCTGCACATCTCCGCCC
GGAAGGCCCTTAAATCTGGCAAGATGGAAATCGCAAGAAGGTTCTACGAG
CTCTTTCTCTTTCAATGGAAGGGGTATCGGACCGAGAATGCGATTGCACA
CACCTACTTCCTGTGGGCCTTGCTCGAGCAACGCGCTAAGGATTACACCA
AGGCCCGCCGGCTCTTTCAGGAAGCCACTGAGCGGTACCCTACCCATGCT
CGTCTTCTTCAGGCTTGGGCATTGATGGAATCCAAGTGTGGCAAGTTAGA
AGAAGCGCAACGACTGATCAAGGAAGCGGTGGAGAATGACAAGAGCTTGG
AGCCCGTATTGAAATGGAAAATGTGGGGATTGCCCCCCGCAACGGCCGCG
GCCGCGGCTGCCATTGTAACTGCTGGAACAGCAGCGCCCGGGGCAGTAGG
TATTGTCTGAAAGGATGGGAGGGGTAGAAGGAGGGTTGAGGGTGTGGTTT
TAGGGACTTAAGATGAGGGGACTGTGGGTAGATGTCGGTACACGCCGTGT
ACATGCTTCCTTTTTGGTTAGATACCTGTATATATGAACATAAGGATGAA
AAATGGTGAGAAAGGAGTATGCAGCACCGAGCAAAAATAGGAATTTTAAG
GGGATGGCAGAAACACACAAGAGAGGACAGTTGAGAGAGTTTGAATAACG
GTTTCGATTGAACGCAGGCACCAGTGCCTTTCGCACGCGGTGGTTCACAA
CAAGAGAGAGAAAAGAGCAAGGCGGTGGCAGAAGTTGAATGGACCAATGG
TGCGACATCCCATCCACCACTTGCATGTGTAGATGTGTGCGTGCGCATCT
TCTGTATCAGGCGATTTCATACATGTCGACCACCACCAACATTTCTTCCA
GCCCCACGTCCCACGCACGTACGTATCGAACGTACCGGTTTTTGAATTCG
TTTTAGGAAGTGGGAGATTCGGTCCCATCGCGTTCGCATTTGATTATACT
ATCGACGTGACAACAATAACATCTTCAATGCTATGAACGTAGTCAGGCGG
CGGGGAGCTAGGCTACACTACAATTTAGTCTGGGGACGGGTGAGTTCAGA
CCACCACCGATTGCCTTGGTGAGAATGGAGAAGAGTGTGCAACAGAGCAA
GAGGACATTTGATAGAAATAGGTATTAAAAGACGTGTAAAAGTGCAATTA
AAAG

Coding sequence (CDS) from alignment at chr5:1206906..1209109-

>NO05G04630.1 ID=NO05G04630.1|Name=NO05G04630.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr5:1206906..1209109- (Nannochloropsis oceanica)
ATGCCTATCACTACTGCCTGCCTGTCTCGTCGCCTGTTCAGGGCTGCCAC
GGCAACTGCCATATGCTGCTTGCTTCTGGCACCTACGGCCGTCGGGTATG
TCACACTGCGCCCTCCCTGTGCATCCAGCATGACCCGCGCGTCCCTTTCG
TCTTCCCCTCCCTCGTCCACGGCCACCTCCTCCTCCCGCTCCTCGAGCAA
CGTTGTCCATACTGACACGGGCCTTCTCATTAAGAATTACCGCCCCTTGC
CTCCTTCCGACGACGACCCACTCGACGTGCGCTGTGCCCTGCTGCACATC
TCCGCCCGGAAGGCCCTTAAATCTGGCAAGATGGAAATCGCAAGAAGGTT
CTACGAGCTCTTTCTCTTTCAATGGAAGGGGTATCGGACCGAGAATGCGA
TTGCACACACCTACTTCCTGTGGGCCTTGCTCGAGCAACGCGCTAAGGAT
TACACCAAGGCCCGCCGGCTCTTTCAGGAAGCCACTGAGCGGTACCCTAC
CCATGCTCGTCTTCTTCAGGCTTGGGCATTGATGGAATCCAAGTGTGGCA
AGTTAGAAGAAGCGCAACGACTGATCAAGGAAGCGGTGGAGAATGACAAG
AGCTTGGAGCCCGTATTGAAATGGAAAATGTGGGGATTGCCCCCCGCAAC
GGCCGCGGCCGCGGCTGCCATTGTAACTGCTGGAACAGCAGCGCCCGGGG
CAGTAGGTATTGTCTGA

Synonyms

Publications