NO05G04490, NO05G04490 (gene) Nannochloropsis oceanica

Overview
NameNO05G04490
Unique NameNO05G04490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1421
Alignment locationchr5:1165288..1166708 +

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Properties
Property NameValue
DescriptionIntegral membrane protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1165288..1166708 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019185Integral_membrane_SYS1-rel
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO05G04490 vs. NCBI_GenBank
Match: EWM27958.1 (Integral membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 1.900e-67
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 0
Query:    1 MGAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVIDQT 150
            MGA  FDPK+I+YQIIALQCLYYLVEGGILMGFNL+FG DVS+ QIFTP+GLE+ SAEGLLNV+ALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFH LAC  YESFP+TLLWW+CHLVG+S+MTLLGEHLCARSELRDIPLFV+ Q+
Sbjct:    1 MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQS 149          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_002293932.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED88941.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 139.4 bits (350), Expect = 9.100e-30
Identity = 68/141 (48.23%), Postives = 102/141 (72.34%), Query Frame = 0
Query:    6 FDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVI 147
            F+P+LI+ QI+ALQ  +YLV G IL   +++F T V++ +IFT K L++ +A G ++  A+L+S + GSVLL  +VE++KKCLDF VTLF  H + C +Y+  PST  WW+ H++G+  M +LGE+LC++ EL DIPL V+
Sbjct:    3 FNPRLILSQIVALQSFHYLVLGFILQVNHVLFATSVTVDRIFTAKYLDLWTALGWVDNAAVLVSSLVGSVLLVFIVEKSKKCLDFCVTLFLIHVIICSIYDGVPSTWDWWIVHILGMIAMVVLGEYLCSKRELSDIPLLVL 143          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_002186414.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65884.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 137.5 bits (345), Expect = 3.400e-29
Identity = 71/146 (48.63%), Postives = 99/146 (67.81%), Query Frame = 0
Query:    3 AQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAE--GLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVI 147
            AQ F PKLI  QI++LQC +Y +        ++++GT V++ +IFT + L +  +E  G  + IAL L+ + GSVLL V+VE++KKCLDF VTLF  H L C +Y+ FP+ L WWV H++G  VM LLGE+LC+R EL DIP+  I
Sbjct:   30 AQPFYPKLIFAQIVSLQCFHYFLLAFFFQVNHVLYGTTVTIDRIFTDRYLRLWQSERSGWADAIALFLASLVGSVLLAVIVEKSKKCLDFGVTLFLLHLLLCSLYDGFPTILDWWVMHVLGTIVMVLLGEYLCSRRELDDIPILQI 175          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: CBN77349.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.5 bits (319), Expect = 3.600e-26
Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 0
Query:    6 FDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLF 145
            FDPKLIV QI+ALQ  YY+  G  L  F  +FGT V    IF+ + + + +  G   +   +L+ ++G++LL ++VERAKKCLDFT TL+  H   C  Y+  P    WW+  +  L++M +LGE+ C+R ELRDIPLF
Sbjct:    4 FDPKLIVCQIVALQSFYYVAMGVFLGSFRAVFGTQVGTRLIFSGELVSLSTTAGWTAICCQVLTAISGALLLPMIVERAKKCLDFTSTLYIIHVAICSFYDGIPHNWEWWILQMASLALMVVLGEYACSRRELRDIPLF 142          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: KXZ56181.1 (hypothetical protein GPECTOR_1g156 [Gonium pectorale])

HSP 1 Score: 124.4 bits (311), Expect = 3.000e-25
Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = 0
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEG---GILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LI+ QI+ LQCL+YL  G   G+L+G ++     +S+  +F  K   +G+  G ++V++LLL+ V G+V L  +VERAKKCLDF  T F FHFL C  ++ FP+ L WW+ +++GL +M+L GE LC R E+++IPL
Sbjct:    4 GAAVWDPVLIIAQIVTLQCLFYLSLGLWQGLLLGPSV---GRLSIAHLFGWKLYSLGTYVGWMSVVSLLLTSVLGAVFLVWIVERAKKCLDFASTCFLFHFLFCWRHDGFPTRLEWWLANILGLVIMSLFGEWLCLRREMQEIPL 145          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: PIN09841.1 (Integral membrane protein involved in transport between the late Golgi and endosome [Handroanthus impetiginosus])

HSP 1 Score: 124.4 bits (311), Expect = 3.000e-25
Identity = 63/142 (44.37%), Postives = 89/142 (62.68%), Query Frame = 0
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            G  A+DP LIV QI+ LQCLYY+  G  L+       + +S+   F    +   +A G   + ++ LS +AG+V L  +VERAKKCLDF  TL+  H   C +Y  +P+++ WWV H+ GL+VM LLGEHLC + ELR+IP+
Sbjct:    4 GTAAWDPWLIVAQIVCLQCLYYMSLGVFLVILVCSRVSRMSLVYFFDYATVTASTAIGWCVMASIFLSSIAGAVFLVYIVERAKKCLDFCATLYIIHLFICFIYGGWPASITWWVVHITGLAVMELLGEHLCMKRELREIPI 145          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_645912.1 (hypothetical protein DDB_G0269368 [Dictyostelium discoideum AX4] >Q55E69.1 RecName: Full=Protein SYS1 homolog >EAL72034.1 hypothetical protein DDB_G0269368 [Dictyostelium discoideum AX4])

HSP 1 Score: 124.0 bits (310), Expect = 3.900e-25
Identity = 58/139 (41.73%), Postives = 92/139 (66.19%), Query Frame = 0
Query:    5 AFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            A+DPKLI+ QI+++QCLYY++  GIL   + +F + +S+ Q+F  + +   S  G + + A L++ + GS  L  +VER+KKCLD + T+ F HF+   +   FP T++WW   L+G+ +M ++GE+LC R EL DIPL
Sbjct:    7 AWDPKLIIGQILSIQCLYYILLAGILYLLDSMFSSSLSLEQMFEYQSINTHSQSGRVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQLIGMVIMAMIGEYLCMRKELMDIPL 145          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_012856835.1 (PREDICTED: protein SYS1 homolog [Erythranthe guttata] >EYU21551.1 hypothetical protein MIMGU_mgv1a015601mg [Erythranthe guttata])

HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24
Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 0
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            G  A+DP LIV QI++LQCLYYL  G +L   +++ GT V   S+   F    +   +A G   + ++LLS +AG+  L  +VERAKKCLDF  TL+  H   C  Y  +P+++ WWV ++ GL+VM LLGE+LC R ELR+IP+
Sbjct:    4 GTAAWDPWLIVAQIVSLQCLYYLTLGVLL---SILVGTRVSKMSLVYFFDYATVTASTATGWCVMASILLSSIAGAGYLVYLVERAKKCLDFCATLYIIHLFICIAYGGWPASVTWWVVNITGLAVMALLGEYLCMRRELREIPI 145          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_015938373.1 (protein SYS1 homolog [Arachis duranensis] >XP_016174470.1 protein SYS1 homolog [Arachis ipaensis])

HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 0
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYY+  G +L   +L+ GT V   S+   F    +   +  G   + A+L+S VAG++ +  ++ERAKKCLDF+ TL+  H   C VY  +PS++ WW+ +  GL+ M LLGE+LC R ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVCLQCLYYITLGILL---SLLVGTRVSRLSLVYFFDYATITTSTVTGWCVIAAILISSVAGAIYMLYLIERAKKCLDFSATLYIIHLFICIVYGGWPSSITWWIVNGTGLAAMALLGEYLCIRRELREIPI 145          
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_003569294.1 (protein SYS1 homolog isoform X1 [Brachypodium distachyon])

HSP 1 Score: 120.9 bits (302), Expect = 3.300e-24
Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 0
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL   G+LM   L+ GT V   ++  +F    L   +  G   + + LL+ VAG+  +  V+ERAKKCLDF  TL+  H   C +Y  +P+++ WWV ++V L++M+LLGE+LC R ELRDIP+
Sbjct:    4 GAMVWDPWLIVSQIVCLQCLYYLAL-GLLMA--LLVGTRVPRLTLLYLFDFATLTPRTTTGWCAIASFLLAAVAGAAFMLYVIERAKKCLDFAATLYIIHLFICIIYGGWPASITWWVVNIVSLAIMSLLGEYLCIRRELRDIPV 145          
The following BLAST results are available for this feature:
BLAST of NO05G04490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27958.11.900e-6785.23Integral membrane protein [Nannochloropsis gaditan... [more]
XP_002293932.19.100e-3048.23predicted protein, partial [Thalassiosira pseudona... [more]
XP_002186414.13.400e-2948.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBN77349.13.600e-2644.60conserved unknown protein [Ectocarpus siliculosus][more]
KXZ56181.13.000e-2545.52hypothetical protein GPECTOR_1g156 [Gonium pectora... [more]
PIN09841.13.000e-2544.37Integral membrane protein involved in transport be... [more]
XP_645912.13.900e-2541.73hypothetical protein DDB_G0269368 [Dictyostelium d... [more]
XP_012856835.12.000e-2445.52PREDICTED: protein SYS1 homolog [Erythranthe gutta... [more]
XP_015938373.12.000e-2444.14protein SYS1 homolog [Arachis duranensis] >XP_0161... [more]
XP_003569294.13.300e-2445.52protein SYS1 homolog isoform X1 [Brachypodium dist... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003408NSK003408Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04490.1NO05G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585124gene_3265Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g106gene2612Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04490.1NO05G04490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04490 ID=NO05G04490|Name=NO05G04490|organism=Nannochloropsis oceanica|type=gene|length=1421bp
ATGGGTGCTCAAGgtacgtttttggagaggggtgtatgcagggcaatgtt
actattcccctttgccttcccgcgttgctcatcccacccttttctacaca
cattttcacacccctttcctgccaccttccttaccgcacttccacccgtg
cctttactgcctctctcccttcccgctcttcccgaccaccccaaaccccc
actaccccacaacaacaacaacacccgtatccgcaccaccgacccatccc
ttcttgcccccccggcccgtccatccccccttcccctcgttctactccca
ccccagCCTTTGACCCCAAGCTGATAGTCTACCAGATCATCGCCCTTCAG
gtattctatttgtagctcttcatcctaccctttgcatcatccccacatgt
tttgactcattctttcctccctcgctccctcgctccctcgctcccttgct
cgattcgctctcttcgttgcgccagTGCCTGTACTATTTGGTCGAGGGGG
GAATCTTGATGGGATTTAATTTAATTTTCGGTACGGACGTGTCCATGACA
CAAATATTCACGCCCAAGGGTCTGGAAGTAGGATCGGCCGAAGGGCTTCT
GAACGTGATTGCGTTGTTACTGTCCTTTGTGGCGGGgtaagaaaggaggg
aaaaagagagggaaggatcgcgcatccaaacatgctcatccacggtttcc
atagattagctcaactattcaaattagatttatttttttcctctcccatt
tcatacggatgaaaccaacagCTCGGTGCTTTTGTGTGTGGTAGTGGAGC
GGGCGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTTTTCCACTTT
CTCGCTTGCGGTGTGTACGAGgtaaggcgaaactggaatcgggaacttgt
agtgcatgacgactatcccccttctacgctgaaacacatgattagacatt
gtgcggtgttattaacatgtgagggcggaagggaggaaaagccgacctgc
ccataaatgaaacaccgggattctgatgttttccctaatctattctaccc
acagTCATTCCCCTCCACCCTCCTCTGGTGGGTCTGCCACCTTGTGGGCC
TCTCCGTCATGACCTTGCTTGgtacgtacaaagcttgaaacaaagcaccc
agttgttgttgtgacggccatgtttttgtgccatttgctttttctcgtgt
ttcactctgtacttactgctgatttctacgtattctcgttccatcaacca
ccaccaatagctatctccaaaattataatgcgttttctatttcattctca
taagcacccttcctccctccctcccttgcttcctccctcattctccaaag
GCGAGCACCTATGTGCCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTA
ATCGACCAAACCACAGGATGA
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protein sequence of NO05G04490.1

>NO05G04490.1-protein ID=NO05G04490.1-protein|Name=NO05G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MGAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPK
GLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFL
ACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVIDQTT
G*
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Synonyms
Publications