NO05G04490.1, NO05G04490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04490.1
Unique NameNO05G04490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length456
Alignment locationchr5:1165288..1166708 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1165288..1166708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04490.1 vs.
Match: EWM27958.1 (Integral membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 1.900e-67
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 0 
Query:    1 MGAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVIDQT 150
            MGA  FDPK+I+YQIIALQCLYYLVEGGILMGFNL+FG DVS+ QIFTP+GLE+ SAEGLLNV+ALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFH LAC  YESFP+TLLWW+CHLVG+S+MTLLGEHLCARSELRDIPLFV+ Q+
Sbjct:    1 MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQS 149
The following BLAST results are available for this feature:
BLAST of NO05G04490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27958.11.900e-6785.23Integral membrane protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04490NO05G04490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04490.1NO05G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04490.1.cds1NO05G04490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04490.1.cds2NO05G04490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04490.1.cds3NO05G04490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04490.1.cds4NO05G04490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04490.1.cds5NO05G04490.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04490.1.cds6NO05G04490.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04490.1 ID=NO05G04490.1|Name=NO05G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
ATGGGTGCTCAAGCCTTTGACCCCAAGCTGATAGTCTACCAGATCATCGC
CCTTCAGTGCCTGTACTATTTGGTCGAGGGGGGAATCTTGATGGGATTTA
ATTTAATTTTCGGTACGGACGTGTCCATGACACAAATATTCACGCCCAAG
GGTCTGGAAGTAGGATCGGCCGAAGGGCTTCTGAACGTGATTGCGTTGTT
ACTGTCCTTTGTGGCGGGCTCGGTGCTTTTGTGTGTGGTAGTGGAGCGGG
CGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTTTTCCACTTTCTC
GCTTGCGGTGTGTACGAGTCATTCCCCTCCACCCTCCTCTGGTGGGTCTG
CCACCTTGTGGGCCTCTCCGTCATGACCTTGCTTGGCGAGCACCTATGTG
CCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTAATCGACCAAACCACA
GGATGA
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protein sequence of NO05G04490.1

>NO05G04490.1-protein ID=NO05G04490.1-protein|Name=NO05G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MGAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPK
GLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFL
ACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVIDQTT
G*
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mRNA from alignment at chr5:1165288..1166708+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04490.1 ID=NO05G04490.1|Name=NO05G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp|location=Sequence derived from alignment at chr5:1165288..1166708+ (Nannochloropsis oceanica)
ATGGGTGCTCAAGGTACGTTTTTGGAGAGGGGTGTATGCAGGGCAATGTT
ACTATTCCCCTTTGCCTTCCCGCGTTGCTCATCCCACCCTTTTCTACACA
CATTTTCACACCCCTTTCCTGCCACCTTCCTTACCGCACTTCCACCCGTG
CCTTTACTGCCTCTCTCCCTTCCCGCTCTTCCCGACCACCCCAAACCCCC
ACTACCCCACAACAACAACAACACCCGTATCCGCACCACCGACCCATCCC
TTCTTGCCCCCCCGGCCCGTCCATCCCCCCTTCCCCTCGTTCTACTCCCA
CCCCAGCCTTTGACCCCAAGCTGATAGTCTACCAGATCATCGCCCTTCAG
GTATTCTATTTGTAGCTCTTCATCCTACCCTTTGCATCATCCCCACATGT
TTTGACTCATTCTTTCCTCCCTCGCTCCCTCGCTCCCTCGCTCCCTTGCT
CGATTCGCTCTCTTCGTTGCGCCAGTGCCTGTACTATTTGGTCGAGGGGG
GAATCTTGATGGGATTTAATTTAATTTTCGGTACGGACGTGTCCATGACA
CAAATATTCACGCCCAAGGGTCTGGAAGTAGGATCGGCCGAAGGGCTTCT
GAACGTGATTGCGTTGTTACTGTCCTTTGTGGCGGGGTAAGAAAGGAGGG
AAAAAGAGAGGGAAGGATCGCGCATCCAAACATGCTCATCCACGGTTTCC
ATAGATTAGCTCAACTATTCAAATTAGATTTATTTTTTTCCTCTCCCATT
TCATACGGATGAAACCAACAGCTCGGTGCTTTTGTGTGTGGTAGTGGAGC
GGGCGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTTTTCCACTTT
CTCGCTTGCGGTGTGTACGAGGTAAGGCGAAACTGGAATCGGGAACTTGT
AGTGCATGACGACTATCCCCCTTCTACGCTGAAACACATGATTAGACATT
GTGCGGTGTTATTAACATGTGAGGGCGGAAGGGAGGAAAAGCCGACCTGC
CCATAAATGAAACACCGGGATTCTGATGTTTTCCCTAATCTATTCTACCC
ACAGTCATTCCCCTCCACCCTCCTCTGGTGGGTCTGCCACCTTGTGGGCC
TCTCCGTCATGACCTTGCTTGGTACGTACAAAGCTTGAAACAAAGCACCC
AGTTGTTGTTGTGACGGCCATGTTTTTGTGCCATTTGCTTTTTCTCGTGT
TTCACTCTGTACTTACTGCTGATTTCTACGTATTCTCGTTCCATCAACCA
CCACCAATAGCTATCTCCAAAATTATAATGCGTTTTCTATTTCATTCTCA
TAAGCACCCTTCCTCCCTCCCTCCCTTGCTTCCTCCCTCATTCTCCAAAG
GCGAGCACCTATGTGCCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTA
ATCGACCAAACCACAGGATGA
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Coding sequence (CDS) from alignment at chr5:1165288..1166708+

>NO05G04490.1 ID=NO05G04490.1|Name=NO05G04490.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr5:1165288..1166708+ (Nannochloropsis oceanica)
ATGGGTGCTCAAGCCTTTGACCCCAAGCTGATAGTCTACCAGATCATCGC
CCTTCAGTGCCTGTACTATTTGGTCGAGGGGGGAATCTTGATGGGATTTA
ATTTAATTTTCGGTACGGACGTGTCCATGACACAAATATTCACGCCCAAG
GGTCTGGAAGTAGGATCGGCCGAAGGGCTTCTGAACGTGATTGCGTTGTT
ACTGTCCTTTGTGGCGGGCTCGGTGCTTTTGTGTGTGGTAGTGGAGCGGG
CGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTTTTCCACTTTCTC
GCTTGCGGTGTGTACGAGTCATTCCCCTCCACCCTCCTCTGGTGGGTCTG
CCACCTTGTGGGCCTCTCCGTCATGACCTTGCTTGGCGAGCACCTATGTG
CCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTAATCGACCAAACCACA
GGATGA
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Synonyms
Publications