NO05G04330, NO05G04330 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04330 vs. NCBI_GenBank
Match: EWM27961.1 (pre-mrna cleavage complex 2 protein [Nannochloropsis gaditana]) HSP 1 Score: 408.3 bits (1048), Expect = 4.800e-110 Identity = 410/722 (56.79%), Postives = 473/722 (65.51%), Query Frame = 0
Query: 1 MDSILQNVRGQYISLFARYAVAMCCRTYEEGSVRDRQCIAKLLRLWRQRSIFHRSVLDPIDVHVERIEKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDSRLPFSTSHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQINVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLEFILAVDKEMREMLDGMVREMGEAKMTIEELARRNPQAAEQLKKVAEASVASRMYTRAQAAVEAFDAVGPFALPPTGREMWGKGGEVAQRLQKVIVGAGPNPEKPGLVNAARETAFQMLSMVNILMQQQGLPPL----------------AIPAILAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYTLSKLYTGEQCKEDGLRFPTPHALQAHQNRLQQTSSLATAAAGKGTTSTEVFLRSRPWFGLVSEWTKEPKPAQRTVALAGKIGHF---QGGKGGGTGSGGAR-VD-XXXXXXXEDSEHCVPMDDSGGGCMLCGEPFDQFWESGSSQWMYRNAIPVVVVKGECVPVSAEAAAAAGDGV--LVHWLCFEASDRKEAAKMLKPRAQSPLPVKSKSNSSGGSQGSDLVEGSEEIELPDE 700
MDSILQN+RGQYI LF+RYAVAMCCRTYEEGS RDRQCI+KLLRLWR+R +F +VLDPIDVH+ RIE+ +LP S + XXXXXXXXXXXXXXXXXXX Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SL+FILAVD+EM+ ML+ +++EMGEAKMTIEELARRNP+AAEQLKK AE +VASR+++ AQ AV+A DAVGPFALPP R+MW KGG+VA RLQK + AGP P K GL+ AA+ETA Q+ +M+NILMQ QGLPPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QY L KLY+GEQCKEDGLRF +P +LQ H+ L + LA AAAGKGTT TEV LRSRPWF + W+KE P++R +LA +I H Q G+ G G + +D E+ HCVP+DD GC LCGEPFDQFWE SS+WMYRNAIPV +V+GECVPVS++ A +G+ LVHWLC+EA DR+EAA+ML Q P + + S GG+ D +G+ +E E
Sbjct: 71 MDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVG----------------------------------EKRKLPPLQSPAPPVXXXXXXXXXXXXXXXXXXXLGRNGESDGSRLRKDPRRQ-----------PAHLSSGPSDKLRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARML----QKPGDTSTTTASHGGN--GDDAKGALSLEKKPE 741
BLAST of NO05G04330 vs. NCBI_GenBank
Match: EWM27962.1 (pre-mrna cleavage complex 2 protein [Nannochloropsis gaditana]) HSP 1 Score: 408.3 bits (1048), Expect = 4.800e-110 Identity = 410/722 (56.79%), Postives = 473/722 (65.51%), Query Frame = 0
Query: 1 MDSILQNVRGQYISLFARYAVAMCCRTYEEGSVRDRQCIAKLLRLWRQRSIFHRSVLDPIDVHVERIEKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDSRLPFSTSHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQINVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLEFILAVDKEMREMLDGMVREMGEAKMTIEELARRNPQAAEQLKKVAEASVASRMYTRAQAAVEAFDAVGPFALPPTGREMWGKGGEVAQRLQKVIVGAGPNPEKPGLVNAARETAFQMLSMVNILMQQQGLPPL----------------AIPAILAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYTLSKLYTGEQCKEDGLRFPTPHALQAHQNRLQQTSSLATAAAGKGTTSTEVFLRSRPWFGLVSEWTKEPKPAQRTVALAGKIGHF---QGGKGGGTGSGGAR-VD-XXXXXXXEDSEHCVPMDDSGGGCMLCGEPFDQFWESGSSQWMYRNAIPVVVVKGECVPVSAEAAAAAGDGV--LVHWLCFEASDRKEAAKMLKPRAQSPLPVKSKSNSSGGSQGSDLVEGSEEIELPDE 700
MDSILQN+RGQYI LF+RYAVAMCCRTYEEGS RDRQCI+KLLRLWR+R +F +VLDPIDVH+ RIE+ +LP S + XXXXXXXXXXXXXXXXXXX Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SL+FILAVD+EM+ ML+ +++EMGEAKMTIEELARRNP+AAEQLKK AE +VASR+++ AQ AV+A DAVGPFALPP R+MW KGG+VA RLQK + AGP P K GL+ AA+ETA Q+ +M+NILMQ QGLPPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QY L KLY+GEQCKEDGLRF +P +LQ H+ L + LA AAAGKGTT TEV LRSRPWF + W+KE P++R +LA +I H Q G+ G G + +D E+ HCVP+DD GC LCGEPFDQFWE SS+WMYRNAIPV +V+GECVPVS++ A +G+ LVHWLC+EA DR+EAA+ML Q P + + S GG+ D +G+ +E E
Sbjct: 52 MDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVG----------------------------------EKRKLPPLQSPAPPVXXXXXXXXXXXXXXXXXXXLGRNGESDGSRLRKDPRRQ-----------PAHLSSGPSDKLRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARML----QKPGDTSTTTASHGGN--GDDAKGALSLEKKPE 722 The following BLAST results are available for this feature:
BLAST of NO05G04330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04330 ID=NO05G04330|Name=NO05G04330|organism=Nannochloropsis oceanica|type=gene|length=4187bpback to top protein sequence of NO05G04330.2 >NO05G04330.2-protein ID=NO05G04330.2-protein|Name=NO05G04330.2|organism=Nannochloropsis oceanica|type=polypeptide|length=703bpback to top protein sequence of NO05G04330.1 >NO05G04330.1-protein ID=NO05G04330.1-protein|Name=NO05G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=703bpback to top Synonyms
Publications
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