NO05G04070, NO05G04070 (gene) Nannochloropsis oceanica

Overview
NameNO05G04070
Unique NameNO05G04070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2166
Alignment locationchr5:1046574..1048739 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1046574..1048739 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G04070 vs. NCBI_GenBank
Match: EWM29520.1 (hypothetical protein Naga_100006g93 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-7
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 0 
Query:  321 HPRKLGHSLYEFIVRLLGEACLGKRRLNEAGFWLSLTKTVNRL-EVEDPG----HLRSLLGS-LRWQRANRPNAFTILVPRPSGDLGGGRDCVQ---RLTIHGTFPVGITVQDPR--VVRETLAATVRQITQGAITPAEIENVQELYETLWSSHETVPLER 471
            H    G SL+ F +RLLG   LG R L+E+  W S+   V +L + ++ G    ++   +G  + W+R  R   F + VPRP           +    + +  TF +GIT++DP    V+  LA  V +I  GA+ P+ +  V   Y  LW+++E + L++
Sbjct:  165 HTCTRGVSLWTFTLRLLGVKALGWRALDESATWKSIGIRVTKLRKQQEEGSAKININEWIGEHIVWRREFRTRPFDMRVPRPPXXXXXEEAAAELPGPVRVKSTFALGITLRDPSDPDVQRALANAVDRIAPGAV-PSRMGLVFAEYRRLWNAYEPLSLQQ 324
The following BLAST results are available for this feature:
BLAST of NO05G04070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29520.12.700e-730.43hypothetical protein Naga_100006g93 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003452NSK003452Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04070.1NO05G04070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04070.1NO05G04070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04070 ID=NO05G04070|Name=NO05G04070|organism=Nannochloropsis oceanica|type=gene|length=2166bp
ATGGATCTGTCTCAAAGCAGCGTCCCGCCCTCGTCAACTACCTCCACCCG
CTCTGCTCCGATGGCTTTTTTGTCATCTCCGCCAAGGCCACCAGGTGCGA
GCGAAGGTACAGGGGGAGGTGGAAATGACGGGGTTGTACTGCTGCCACCT
CCTCCAAGCCCCCCTCCGCCACCTTTCATCACCATCCCGTCCTTGGCGCA
GCCTCCATACGCGGGTAGCCCACCATGCGGGGGAGGTAGGGGCAGCGGAG
GCGGTGCGAGCAGTGCCATGGGTACGGTGCGTGGTGGGGTTGGTTGCTAT
AATGCAGACGACAATTATGAGGAGGAGCAACGCGCCCAACCGATGGTTTC
AAAAGAGCCACAGCCGCAGCGGGCACCCAAACCGGCCAAGAATAAGAAGC
ATAAGCCTCCCTCCTTTTTCACCTCCTCCTCCTTCTCCACTGCCTTCTCT
TCCGGCGGCGGCAATGACGGTTGTGGTAGCGCTCCGATCTCATACACTCC
TCTAACGAAAGGAGGGAAAAAGAATCCCAACGCCTCTCCCGCGTTGCCCC
CTTTGCCTGGGGTCATCTCCTCTTGTTACGGGAAGCGGAAAAGGGATTTG
GGTGCAGATTATGAGAGTATTTTGTTGGTTATCAAGGCTGTGTGTAAGCC
GGCACCGCATGGCTTTGTGTTTATGGATGTGGATGACAAGAAGGGGGGGA
AGGCGTTGAATGGCGGGATCGGAGTGGCAGGAGGAGGAGGAGGAGGAGGA
AGAGGAGAAGGAGGAGAAGTGGAAGGAGGGGAAGGAGGGGAAGAAGGAGA
GCTTAAGAGAGAGTTGCTTCTTGCTGCTGAAAGTGGTGATGGTGGAGGGA
GAGGTGGAGGAGAAGGAGGAATGGGGGGAGTTGGAGGCTCGGGCAACGGG
AGCAGTAGCAGCAGTGGTAGTATGATCAGCAGCAGCAATGCCTGTGGCGA
CGGTGGCGTGCATCCACGGAAGCTGGGGCATAGCCTCTACGAGTTTATAG
TGCGCTTGTTAGGCGAGGCTTGCTTGGGGAAACGTCGTTTGAACGAAGCA
GGGTTCTGGTTATCCCTTACCAAAACCGTGAACCGTCTGGAAGTCGAAGA
TCCCGGGCACCTGCGTTCCCTTCTAGGCTCCCTACGATGGCAGCGTGCGA
ATCGTCCGAACGCGTTCACCATTCTGGTGCCCCGTCCTTCCGGAGATCTT
GGGGGAGGGAGGGATTGTGTGCAGCGTTTGACGATACATGGGACGTTTCC
GGTTGGGATAACGGTACAAGACCCTCGGGTGGTCCGAGAGACACTTGCGG
CGACCGTGCGGCAAATAACACAGGGGGCCATCACTCCTGCGGAGATTGAG
AACGTGCAAGAGCTGTATGAGACGTTGTGGTCGAGTCATGAGACGGTGCC
GTTGGAACGGATCCCGTTTTTGAGGTTTAAACGGGGGATCGAGGTGCAAC
AGGTCATGCGGCTGTCTGGGATGGAGGAACCGGAGGCAAGGAAGAAGATG
ATTGAGGAGGTGCGCAAGATGGATCGAGTGGATAAAATGCTTCTACCATC
GACGGCATTTCTATTGAGGGAGGACCCACCACGTATAAGGAAGGAGCAGC
AGCAGCATGAGGAGGAGGAAGTGGTGGATAGGAAGGTAAAAAGGGGAAGG
AAGAAGAGAGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AGGGGTGGCTGTGACGAGGAAGCGGAAGAGGGAGGAGGTTGAGGAGGAAG
AGAAGGAGAAGGAGGAAGACACGGAGGACGAAGACATTTCTCTGTTGGAT
ATGCACGAGGAAGGGGAAGTGCGGGAGGAAGAAGGGGAGGAGCAAGGAGT
GCATAGGCAGAAGAGGAAGAAGGCCGGAAACCCGAGCACAAGGACCAGTA
GTCGCAAGGGGAGTAAAGAGGGGAGGGGAAAGGAAAAGAATGAAAAGAGA
GGAGATGAAGGAGGAGGGGAAAGACAAGAGGAGGAGGAGGAAGAGGAGGA
AGAGGACGTGAACATCGCGATGATCATGATAGGTATTGGTCGGGATAATG
AACATGGGAGCGGGAGTGAGGAAGGGGGGGAGGGAGAGGGATTGAAGGGG
GAGGGCAGAGGGGAGAGGGATATGGGGGAAGAAGGAGGAGAGGAAGGGGG
AAGGGGGGAGGAGTAG
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protein sequence of NO05G04070.1

>NO05G04070.1-protein ID=NO05G04070.1-protein|Name=NO05G04070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MDLSQSSVPPSSTTSTRSAPMAFLSSPPRPPGASEGTGGGGNDGVVLLPP
PPSPPPPPFITIPSLAQPPYAGSPPCGGGRGSGGGASSAMGTVRGGVGCY
NADDNYEEEQRAQPMVSKEPQPQRAPKPAKNKKHKPPSFFTSSSFSTAFS
SGGGNDGCGSAPISYTPLTKGGKKNPNASPALPPLPGVISSCYGKRKRDL
GADYESILLVIKAVCKPAPHGFVFMDVDDKKGGKALNGGIGVAGGGGGGG
RGEGGEVEGGEGGEEGELKRELLLAAESGDGGGRGGGEGGMGGVGGSGNG
SSSSSGSMISSSNACGDGGVHPRKLGHSLYEFIVRLLGEACLGKRRLNEA
GFWLSLTKTVNRLEVEDPGHLRSLLGSLRWQRANRPNAFTILVPRPSGDL
GGGRDCVQRLTIHGTFPVGITVQDPRVVRETLAATVRQITQGAITPAEIE
NVQELYETLWSSHETVPLERIPFLRFKRGIEVQQVMRLSGMEEPEARKKM
IEEVRKMDRVDKMLLPSTAFLLREDPPRIRKEQQQHEEEEVVDRKVKRGR
KKRDGGGGGGGGGGGGEGVAVTRKRKREEVEEEEKEKEEDTEDEDISLLD
MHEEGEVREEEGEEQGVHRQKRKKAGNPSTRTSSRKGSKEGRGKEKNEKR
GDEGGGERQEEEEEEEEEDVNIAMIMIGIGRDNEHGSGSEEGGEGEGLKG
EGRGERDMGEEGGEEGGRGEE*
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Synonyms
Publications