NO05G04070.1, NO05G04070.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04070.1
Unique Name	NO05G04070.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2166
Alignment location	chr5:1046574..1048739 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1046574..1048739 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO05G04070.1 vs.

BLAST of NO05G04070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G04070	NO05G04070	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04070.1	NO05G04070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04070.1.cds1	NO05G04070.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1046574..1048739-
coding sequence from alignment at chr5:1046574..1048739-

mRNA sequence

>NO05G04070.1 ID=NO05G04070.1|Name=NO05G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp
ATGGATCTGTCTCAAAGCAGCGTCCCGCCCTCGTCAACTACCTCCACCCG
CTCTGCTCCGATGGCTTTTTTGTCATCTCCGCCAAGGCCACCAGGTGCGA
GCGAAGGTACAGGGGGAGGTGGAAATGACGGGGTTGTACTGCTGCCACCT
CCTCCAAGCCCCCCTCCGCCACCTTTCATCACCATCCCGTCCTTGGCGCA
GCCTCCATACGCGGGTAGCCCACCATGCGGGGGAGGTAGGGGCAGCGGAG
GCGGTGCGAGCAGTGCCATGGGTACGGTGCGTGGTGGGGTTGGTTGCTAT
AATGCAGACGACAATTATGAGGAGGAGCAACGCGCCCAACCGATGGTTTC
AAAAGAGCCACAGCCGCAGCGGGCACCCAAACCGGCCAAGAATAAGAAGC
ATAAGCCTCCCTCCTTTTTCACCTCCTCCTCCTTCTCCACTGCCTTCTCT
TCCGGCGGCGGCAATGACGGTTGTGGTAGCGCTCCGATCTCATACACTCC
TCTAACGAAAGGAGGGAAAAAGAATCCCAACGCCTCTCCCGCGTTGCCCC
CTTTGCCTGGGGTCATCTCCTCTTGTTACGGGAAGCGGAAAAGGGATTTG
GGTGCAGATTATGAGAGTATTTTGTTGGTTATCAAGGCTGTGTGTAAGCC
GGCACCGCATGGCTTTGTGTTTATGGATGTGGATGACAAGAAGGGGGGGA
AGGCGTTGAATGGCGGGATCGGAGTGGCAGGAGGAGGAGGAGGAGGAGGA
AGAGGAGAAGGAGGAGAAGTGGAAGGAGGGGAAGGAGGGGAAGAAGGAGA
GCTTAAGAGAGAGTTGCTTCTTGCTGCTGAAAGTGGTGATGGTGGAGGGA
GAGGTGGAGGAGAAGGAGGAATGGGGGGAGTTGGAGGCTCGGGCAACGGG
AGCAGTAGCAGCAGTGGTAGTATGATCAGCAGCAGCAATGCCTGTGGCGA
CGGTGGCGTGCATCCACGGAAGCTGGGGCATAGCCTCTACGAGTTTATAG
TGCGCTTGTTAGGCGAGGCTTGCTTGGGGAAACGTCGTTTGAACGAAGCA
GGGTTCTGGTTATCCCTTACCAAAACCGTGAACCGTCTGGAAGTCGAAGA
TCCCGGGCACCTGCGTTCCCTTCTAGGCTCCCTACGATGGCAGCGTGCGA
ATCGTCCGAACGCGTTCACCATTCTGGTGCCCCGTCCTTCCGGAGATCTT
GGGGGAGGGAGGGATTGTGTGCAGCGTTTGACGATACATGGGACGTTTCC
GGTTGGGATAACGGTACAAGACCCTCGGGTGGTCCGAGAGACACTTGCGG
CGACCGTGCGGCAAATAACACAGGGGGCCATCACTCCTGCGGAGATTGAG
AACGTGCAAGAGCTGTATGAGACGTTGTGGTCGAGTCATGAGACGGTGCC
GTTGGAACGGATCCCGTTTTTGAGGTTTAAACGGGGGATCGAGGTGCAAC
AGGTCATGCGGCTGTCTGGGATGGAGGAACCGGAGGCAAGGAAGAAGATG
ATTGAGGAGGTGCGCAAGATGGATCGAGTGGATAAAATGCTTCTACCATC
GACGGCATTTCTATTGAGGGAGGACCCACCACGTATAAGGAAGGAGCAGC
AGCAGCATGAGGAGGAGGAAGTGGTGGATAGGAAGGTAAAAAGGGGAAGG
AAGAAGAGAGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AGGGGTGGCTGTGACGAGGAAGCGGAAGAGGGAGGAGGTTGAGGAGGAAG
AGAAGGAGAAGGAGGAAGACACGGAGGACGAAGACATTTCTCTGTTGGAT
ATGCACGAGGAAGGGGAAGTGCGGGAGGAAGAAGGGGAGGAGCAAGGAGT
GCATAGGCAGAAGAGGAAGAAGGCCGGAAACCCGAGCACAAGGACCAGTA
GTCGCAAGGGGAGTAAAGAGGGGAGGGGAAAGGAAAAGAATGAAAAGAGA
GGAGATGAAGGAGGAGGGGAAAGACAAGAGGAGGAGGAGGAAGAGGAGGA
AGAGGACGTGAACATCGCGATGATCATGATAGGTATTGGTCGGGATAATG
AACATGGGAGCGGGAGTGAGGAAGGGGGGGAGGGAGAGGGATTGAAGGGG
GAGGGCAGAGGGGAGAGGGATATGGGGGAAGAAGGAGGAGAGGAAGGGGG
AAGGGGGGAGGAGTAG

protein sequence of NO05G04070.1

>NO05G04070.1-protein ID=NO05G04070.1-protein|Name=NO05G04070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MDLSQSSVPPSSTTSTRSAPMAFLSSPPRPPGASEGTGGGGNDGVVLLPP
PPSPPPPPFITIPSLAQPPYAGSPPCGGGRGSGGGASSAMGTVRGGVGCY
NADDNYEEEQRAQPMVSKEPQPQRAPKPAKNKKHKPPSFFTSSSFSTAFS
SGGGNDGCGSAPISYTPLTKGGKKNPNASPALPPLPGVISSCYGKRKRDL
GADYESILLVIKAVCKPAPHGFVFMDVDDKKGGKALNGGIGVAGGGGGGG
RGEGGEVEGGEGGEEGELKRELLLAAESGDGGGRGGGEGGMGGVGGSGNG
SSSSSGSMISSSNACGDGGVHPRKLGHSLYEFIVRLLGEACLGKRRLNEA
GFWLSLTKTVNRLEVEDPGHLRSLLGSLRWQRANRPNAFTILVPRPSGDL
GGGRDCVQRLTIHGTFPVGITVQDPRVVRETLAATVRQITQGAITPAEIE
NVQELYETLWSSHETVPLERIPFLRFKRGIEVQQVMRLSGMEEPEARKKM
IEEVRKMDRVDKMLLPSTAFLLREDPPRIRKEQQQHEEEEVVDRKVKRGR
KKRDGGGGGGGGGGGGEGVAVTRKRKREEVEEEEKEKEEDTEDEDISLLD
MHEEGEVREEEGEEQGVHRQKRKKAGNPSTRTSSRKGSKEGRGKEKNEKR
GDEGGGERQEEEEEEEEEDVNIAMIMIGIGRDNEHGSGSEEGGEGEGLKG
EGRGERDMGEEGGEEGGRGEE*

mRNA from alignment at chr5:1046574..1048739-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G04070.1 ID=NO05G04070.1|Name=NO05G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at chr5:1046574..1048739- (Nannochloropsis oceanica)
ATGGATCTGTCTCAAAGCAGCGTCCCGCCCTCGTCAACTACCTCCACCCG
CTCTGCTCCGATGGCTTTTTTGTCATCTCCGCCAAGGCCACCAGGTGCGA
GCGAAGGTACAGGGGGAGGTGGAAATGACGGGGTTGTACTGCTGCCACCT
CCTCCAAGCCCCCCTCCGCCACCTTTCATCACCATCCCGTCCTTGGCGCA
GCCTCCATACGCGGGTAGCCCACCATGCGGGGGAGGTAGGGGCAGCGGAG
GCGGTGCGAGCAGTGCCATGGGTACGGTGCGTGGTGGGGTTGGTTGCTAT
AATGCAGACGACAATTATGAGGAGGAGCAACGCGCCCAACCGATGGTTTC
AAAAGAGCCACAGCCGCAGCGGGCACCCAAACCGGCCAAGAATAAGAAGC
ATAAGCCTCCCTCCTTTTTCACCTCCTCCTCCTTCTCCACTGCCTTCTCT
TCCGGCGGCGGCAATGACGGTTGTGGTAGCGCTCCGATCTCATACACTCC
TCTAACGAAAGGAGGGAAAAAGAATCCCAACGCCTCTCCCGCGTTGCCCC
CTTTGCCTGGGGTCATCTCCTCTTGTTACGGGAAGCGGAAAAGGGATTTG
GGTGCAGATTATGAGAGTATTTTGTTGGTTATCAAGGCTGTGTGTAAGCC
GGCACCGCATGGCTTTGTGTTTATGGATGTGGATGACAAGAAGGGGGGGA
AGGCGTTGAATGGCGGGATCGGAGTGGCAGGAGGAGGAGGAGGAGGAGGA
AGAGGAGAAGGAGGAGAAGTGGAAGGAGGGGAAGGAGGGGAAGAAGGAGA
GCTTAAGAGAGAGTTGCTTCTTGCTGCTGAAAGTGGTGATGGTGGAGGGA
GAGGTGGAGGAGAAGGAGGAATGGGGGGAGTTGGAGGCTCGGGCAACGGG
AGCAGTAGCAGCAGTGGTAGTATGATCAGCAGCAGCAATGCCTGTGGCGA
CGGTGGCGTGCATCCACGGAAGCTGGGGCATAGCCTCTACGAGTTTATAG
TGCGCTTGTTAGGCGAGGCTTGCTTGGGGAAACGTCGTTTGAACGAAGCA
GGGTTCTGGTTATCCCTTACCAAAACCGTGAACCGTCTGGAAGTCGAAGA
TCCCGGGCACCTGCGTTCCCTTCTAGGCTCCCTACGATGGCAGCGTGCGA
ATCGTCCGAACGCGTTCACCATTCTGGTGCCCCGTCCTTCCGGAGATCTT
GGGGGAGGGAGGGATTGTGTGCAGCGTTTGACGATACATGGGACGTTTCC
GGTTGGGATAACGGTACAAGACCCTCGGGTGGTCCGAGAGACACTTGCGG
CGACCGTGCGGCAAATAACACAGGGGGCCATCACTCCTGCGGAGATTGAG
AACGTGCAAGAGCTGTATGAGACGTTGTGGTCGAGTCATGAGACGGTGCC
GTTGGAACGGATCCCGTTTTTGAGGTTTAAACGGGGGATCGAGGTGCAAC
AGGTCATGCGGCTGTCTGGGATGGAGGAACCGGAGGCAAGGAAGAAGATG
ATTGAGGAGGTGCGCAAGATGGATCGAGTGGATAAAATGCTTCTACCATC
GACGGCATTTCTATTGAGGGAGGACCCACCACGTATAAGGAAGGAGCAGC
AGCAGCATGAGGAGGAGGAAGTGGTGGATAGGAAGGTAAAAAGGGGAAGG
AAGAAGAGAGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AGGGGTGGCTGTGACGAGGAAGCGGAAGAGGGAGGAGGTTGAGGAGGAAG
AGAAGGAGAAGGAGGAAGACACGGAGGACGAAGACATTTCTCTGTTGGAT
ATGCACGAGGAAGGGGAAGTGCGGGAGGAAGAAGGGGAGGAGCAAGGAGT
GCATAGGCAGAAGAGGAAGAAGGCCGGAAACCCGAGCACAAGGACCAGTA
GTCGCAAGGGGAGTAAAGAGGGGAGGGGAAAGGAAAAGAATGAAAAGAGA
GGAGATGAAGGAGGAGGGGAAAGACAAGAGGAGGAGGAGGAAGAGGAGGA
AGAGGACGTGAACATCGCGATGATCATGATAGGTATTGGTCGGGATAATG
AACATGGGAGCGGGAGTGAGGAAGGGGGGGAGGGAGAGGGATTGAAGGGG
GAGGGCAGAGGGGAGAGGGATATGGGGGAAGAAGGAGGAGAGGAAGGGGG
AAGGGGGGAGGAGTAG

Coding sequence (CDS) from alignment at chr5:1046574..1048739-

>NO05G04070.1 ID=NO05G04070.1|Name=NO05G04070.1|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at chr5:1046574..1048739- (Nannochloropsis oceanica)
ATGGATCTGTCTCAAAGCAGCGTCCCGCCCTCGTCAACTACCTCCACCCG
CTCTGCTCCGATGGCTTTTTTGTCATCTCCGCCAAGGCCACCAGGTGCGA
GCGAAGGTACAGGGGGAGGTGGAAATGACGGGGTTGTACTGCTGCCACCT
CCTCCAAGCCCCCCTCCGCCACCTTTCATCACCATCCCGTCCTTGGCGCA
GCCTCCATACGCGGGTAGCCCACCATGCGGGGGAGGTAGGGGCAGCGGAG
GCGGTGCGAGCAGTGCCATGGGTACGGTGCGTGGTGGGGTTGGTTGCTAT
AATGCAGACGACAATTATGAGGAGGAGCAACGCGCCCAACCGATGGTTTC
AAAAGAGCCACAGCCGCAGCGGGCACCCAAACCGGCCAAGAATAAGAAGC
ATAAGCCTCCCTCCTTTTTCACCTCCTCCTCCTTCTCCACTGCCTTCTCT
TCCGGCGGCGGCAATGACGGTTGTGGTAGCGCTCCGATCTCATACACTCC
TCTAACGAAAGGAGGGAAAAAGAATCCCAACGCCTCTCCCGCGTTGCCCC
CTTTGCCTGGGGTCATCTCCTCTTGTTACGGGAAGCGGAAAAGGGATTTG
GGTGCAGATTATGAGAGTATTTTGTTGGTTATCAAGGCTGTGTGTAAGCC
GGCACCGCATGGCTTTGTGTTTATGGATGTGGATGACAAGAAGGGGGGGA
AGGCGTTGAATGGCGGGATCGGAGTGGCAGGAGGAGGAGGAGGAGGAGGA
AGAGGAGAAGGAGGAGAAGTGGAAGGAGGGGAAGGAGGGGAAGAAGGAGA
GCTTAAGAGAGAGTTGCTTCTTGCTGCTGAAAGTGGTGATGGTGGAGGGA
GAGGTGGAGGAGAAGGAGGAATGGGGGGAGTTGGAGGCTCGGGCAACGGG
AGCAGTAGCAGCAGTGGTAGTATGATCAGCAGCAGCAATGCCTGTGGCGA
CGGTGGCGTGCATCCACGGAAGCTGGGGCATAGCCTCTACGAGTTTATAG
TGCGCTTGTTAGGCGAGGCTTGCTTGGGGAAACGTCGTTTGAACGAAGCA
GGGTTCTGGTTATCCCTTACCAAAACCGTGAACCGTCTGGAAGTCGAAGA
TCCCGGGCACCTGCGTTCCCTTCTAGGCTCCCTACGATGGCAGCGTGCGA
ATCGTCCGAACGCGTTCACCATTCTGGTGCCCCGTCCTTCCGGAGATCTT
GGGGGAGGGAGGGATTGTGTGCAGCGTTTGACGATACATGGGACGTTTCC
GGTTGGGATAACGGTACAAGACCCTCGGGTGGTCCGAGAGACACTTGCGG
CGACCGTGCGGCAAATAACACAGGGGGCCATCACTCCTGCGGAGATTGAG
AACGTGCAAGAGCTGTATGAGACGTTGTGGTCGAGTCATGAGACGGTGCC
GTTGGAACGGATCCCGTTTTTGAGGTTTAAACGGGGGATCGAGGTGCAAC
AGGTCATGCGGCTGTCTGGGATGGAGGAACCGGAGGCAAGGAAGAAGATG
ATTGAGGAGGTGCGCAAGATGGATCGAGTGGATAAAATGCTTCTACCATC
GACGGCATTTCTATTGAGGGAGGACCCACCACGTATAAGGAAGGAGCAGC
AGCAGCATGAGGAGGAGGAAGTGGTGGATAGGAAGGTAAAAAGGGGAAGG
AAGAAGAGAGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AGGGGTGGCTGTGACGAGGAAGCGGAAGAGGGAGGAGGTTGAGGAGGAAG
AGAAGGAGAAGGAGGAAGACACGGAGGACGAAGACATTTCTCTGTTGGAT
ATGCACGAGGAAGGGGAAGTGCGGGAGGAAGAAGGGGAGGAGCAAGGAGT
GCATAGGCAGAAGAGGAAGAAGGCCGGAAACCCGAGCACAAGGACCAGTA
GTCGCAAGGGGAGTAAAGAGGGGAGGGGAAAGGAAAAGAATGAAAAGAGA
GGAGATGAAGGAGGAGGGGAAAGACAAGAGGAGGAGGAGGAAGAGGAGGA
AGAGGACGTGAACATCGCGATGATCATGATAGGTATTGGTCGGGATAATG
AACATGGGAGCGGGAGTGAGGAAGGGGGGGAGGGAGAGGGATTGAAGGGG
GAGGGCAGAGGGGAGAGGGATATGGGGGAAGAAGGAGGAGAGGAAGGGGG
AAGGGGGGAGGAGTAG

Synonyms

Publications