NO05G03940, NO05G03940 (gene) Nannochloropsis oceanica

Overview
NameNO05G03940
Unique NameNO05G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length685
Alignment locationchr5:1022698..1023382 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1022698..1023382 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G03940 vs. NCBI_GenBank
Match: EWM28022.1 (hypothetical protein Naga_100008g40 [Nannochloropsis gaditana])

HSP 1 Score: 196.8 bits (499), Expect = 5.300e-47
Identity = 108/142 (76.06%), Postives = 119/142 (83.80%), Query Frame = 0 
Query:   28 QDPPHQAYDEGGG--GSFVEDMVYQRDVSMELARKLAQDLDAKKGLLSGRLENALRLSAEAEVRLGKANREYQVKHLTLRKRMLTVVATLALASFIGWLVSALITQKFSLGAVLILPLSLAMGIHLFGKLEGEDGLLQLARS 168
            Q   H   DE G   GS VEDM YQR+VSMELARKL+QDLDAKK LL GRL+NALRLS EAE+RL +ANREYQVKHLTLRKRMLT+VATLALAS IGWL+SAL+T +F LGAVLILPLS+  GI+LFGKLEGEDGLL LA S
Sbjct:   22 QSEGHDGADETGAMEGSLVEDMAYQRNVSMELARKLSQDLDAKKKLLGGRLQNALRLSTEAEIRLNQANREYQVKHLTLRKRMLTIVATLALASLIGWLISALLTHRFQLGAVLILPLSVIAGIYLFGKLEGEDGLLSLAWS 163
The following BLAST results are available for this feature:
BLAST of NO05G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28022.15.300e-4776.06hypothetical protein Naga_100008g40 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003467NSK003467Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03940.1NO05G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584912gene_3204Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g40gene2554Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03940.1NO05G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03940 ID=NO05G03940|Name=NO05G03940|organism=Nannochloropsis oceanica|type=gene|length=685bp
ACAGGACATGTCCTCGTTCGTCATATCTCCAGCGGAAAACAGTGGCGGCG
AAGCGGCTCCTGATGGCGGGGCAAGCACGCAGGAAACCCAAGACCCTCCG
CACCAGGCTTACGATGAAGGAGGAGGAGGTTCTTTCGTAGAAGACATGGT
CTACCAGCGCGACGTATCAATGGAGCTGGCCCGCAAGCTGGCCCAGGACC
TGGACGCCAAGAAGGGTTTGCTGAGTGGCCGGTTGGAAAACGCTTTGAGA
CTGTCAGCGGAGGCGGAAGTAAGACTAGGCAAGGCAAATCGGGAGTACCA
GGTGAAGCACTTGACGCTGCGGAAGCGTATGCTGACAGTTGTGGCCACGT
TAGCCTTGGCGTCTTTCATTGGCTGGTTGGTGAGTGCGTTGATCACACAA
AAGTTTTCTTTGGGGGCGGTACTTATTCTTCCCTTGTCGCTGGCGATGGG
CATCCATCTGTTTGGCAAATTGGAAGGGGAGGATGGACTGCTGCAGCTGG
CCCGGTCGTGAGAGAGTGCGCGGGCATGATTTGAAGGACTCACAAATGCA
CTCGCTGACACGCGCAAAATATTCTCTATAGATAACAAAACGCGCATAAA
GAATTGGAAACGGGTTTTGGCTGTTGACGGGCTCTCTTGGGCCTCCTTGT
TGCGCAGGAGCTGAAAACGGAAATCTGACGGGGAA
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protein sequence of NO05G03940.1

>NO05G03940.1-protein ID=NO05G03940.1-protein|Name=NO05G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSSFVISPAENSGGEAAPDGGASTQETQDPPHQAYDEGGGGSFVEDMVYQ
RDVSMELARKLAQDLDAKKGLLSGRLENALRLSAEAEVRLGKANREYQVK
HLTLRKRMLTVVATLALASFIGWLVSALITQKFSLGAVLILPLSLAMGIH
LFGKLEGEDGLLQLARS*
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Synonyms
Publications