NO05G03940.1, NO05G03940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03940.1
Unique NameNO05G03940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length685
Alignment locationchr5:1022698..1023382 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1022698..1023382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03940.1 vs.
Match: EWM28022.1 (hypothetical protein Naga_100008g40 [Nannochloropsis gaditana])

HSP 1 Score: 196.8 bits (499), Expect = 5.300e-47
Identity = 108/142 (76.06%), Postives = 119/142 (83.80%), Query Frame = 0
Query:   28 QDPPHQAYDEGGG--GSFVEDMVYQRDVSMELARKLAQDLDAKKGLLSGRLENALRLSAEAEVRLGKANREYQVKHLTLRKRMLTVVATLALASFIGWLVSALITQKFSLGAVLILPLSLAMGIHLFGKLEGEDGLLQLARS 168
            Q   H   DE G   GS VEDM YQR+VSMELARKL+QDLDAKK LL GRL+NALRLS EAE+RL +ANREYQVKHLTLRKRMLT+VATLALAS IGWL+SAL+T +F LGAVLILPLS+  GI+LFGKLEGEDGLL LA S
Sbjct:   22 QSEGHDGADETGAMEGSLVEDMAYQRNVSMELARKLSQDLDAKKKLLGGRLQNALRLSTEAEIRLNQANREYQVKHLTLRKRMLTIVATLALASLIGWLISALLTHRFQLGAVLILPLSVIAGIYLFGKLEGEDGLLSLAWS 163          
The following BLAST results are available for this feature:
BLAST of NO05G03940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28022.15.300e-4776.06hypothetical protein Naga_100008g40 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03940NO05G03940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03940.1NO05G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03940.1.cds1NO05G03940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03940.1 ID=NO05G03940.1|Name=NO05G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=685bp
ACAGGACATGTCCTCGTTCGTCATATCTCCAGCGGAAAACAGTGGCGGCG
AAGCGGCTCCTGATGGCGGGGCAAGCACGCAGGAAACCCAAGACCCTCCG
CACCAGGCTTACGATGAAGGAGGAGGAGGTTCTTTCGTAGAAGACATGGT
CTACCAGCGCGACGTATCAATGGAGCTGGCCCGCAAGCTGGCCCAGGACC
TGGACGCCAAGAAGGGTTTGCTGAGTGGCCGGTTGGAAAACGCTTTGAGA
CTGTCAGCGGAGGCGGAAGTAAGACTAGGCAAGGCAAATCGGGAGTACCA
GGTGAAGCACTTGACGCTGCGGAAGCGTATGCTGACAGTTGTGGCCACGT
TAGCCTTGGCGTCTTTCATTGGCTGGTTGGTGAGTGCGTTGATCACACAA
AAGTTTTCTTTGGGGGCGGTACTTATTCTTCCCTTGTCGCTGGCGATGGG
CATCCATCTGTTTGGCAAATTGGAAGGGGAGGATGGACTGCTGCAGCTGG
CCCGGTCGTGAGAGAGTGCGCGGGCATGATTTGAAGGACTCACAAATGCA
CTCGCTGACACGCGCAAAATATTCTCTATAGATAACAAAACGCGCATAAA
GAATTGGAAACGGGTTTTGGCTGTTGACGGGCTCTCTTGGGCCTCCTTGT
TGCGCAGGAGCTGAAAACGGAAATCTGACGGGGAA
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protein sequence of NO05G03940.1

>NO05G03940.1-protein ID=NO05G03940.1-protein|Name=NO05G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSSFVISPAENSGGEAAPDGGASTQETQDPPHQAYDEGGGGSFVEDMVYQ
RDVSMELARKLAQDLDAKKGLLSGRLENALRLSAEAEVRLGKANREYQVK
HLTLRKRMLTVVATLALASFIGWLVSALITQKFSLGAVLILPLSLAMGIH
LFGKLEGEDGLLQLARS*
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mRNA from alignment at chr5:1022698..1023382+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03940.1 ID=NO05G03940.1|Name=NO05G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=685bp|location=Sequence derived from alignment at chr5:1022698..1023382+ (Nannochloropsis oceanica)
ACAGGACATGTCCTCGTTCGTCATATCTCCAGCGGAAAACAGTGGCGGCG AAGCGGCTCCTGATGGCGGGGCAAGCACGCAGGAAACCCAAGACCCTCCG CACCAGGCTTACGATGAAGGAGGAGGAGGTTCTTTCGTAGAAGACATGGT CTACCAGCGCGACGTATCAATGGAGCTGGCCCGCAAGCTGGCCCAGGACC TGGACGCCAAGAAGGGTTTGCTGAGTGGCCGGTTGGAAAACGCTTTGAGA CTGTCAGCGGAGGCGGAAGTAAGACTAGGCAAGGCAAATCGGGAGTACCA GGTGAAGCACTTGACGCTGCGGAAGCGTATGCTGACAGTTGTGGCCACGT TAGCCTTGGCGTCTTTCATTGGCTGGTTGGTGAGTGCGTTGATCACACAA AAGTTTTCTTTGGGGGCGGTACTTATTCTTCCCTTGTCGCTGGCGATGGG CATCCATCTGTTTGGCAAATTGGAAGGGGAGGATGGACTGCTGCAGCTGG CCCGGTCGTGAGAGAGTGCGCGGGCATGATTTGAAGGACTCACAAATGCA CTCGCTGACACGCGCAAAATATTCTCTATAGATAACAAAACGCGCATAAA GAATTGGAAACGGGTTTTGGCTGTTGACGGGCTCTCTTGGGCCTCCTTGT TGCGCAGGAGCTGAAAACGGAAATCTGACGGGGAA
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Coding sequence (CDS) from alignment at chr5:1022698..1023382+

>NO05G03940.1 ID=NO05G03940.1|Name=NO05G03940.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr5:1022698..1023382+ (Nannochloropsis oceanica)
ATGTCCTCGTTCGTCATATCTCCAGCGGAAAACAGTGGCGGCGAAGCGGC
TCCTGATGGCGGGGCAAGCACGCAGGAAACCCAAGACCCTCCGCACCAGG
CTTACGATGAAGGAGGAGGAGGTTCTTTCGTAGAAGACATGGTCTACCAG
CGCGACGTATCAATGGAGCTGGCCCGCAAGCTGGCCCAGGACCTGGACGC
CAAGAAGGGTTTGCTGAGTGGCCGGTTGGAAAACGCTTTGAGACTGTCAG
CGGAGGCGGAAGTAAGACTAGGCAAGGCAAATCGGGAGTACCAGGTGAAG
CACTTGACGCTGCGGAAGCGTATGCTGACAGTTGTGGCCACGTTAGCCTT
GGCGTCTTTCATTGGCTGGTTGGTGAGTGCGTTGATCACACAAAAGTTTT
CTTTGGGGGCGGTACTTATTCTTCCCTTGTCGCTGGCGATGGGCATCCAT
CTGTTTGGCAAATTGGAAGGGGAGGATGGACTGCTGCAGCTGGCCCGGTC
GTGA
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Synonyms
Publications