NO05G03900, NO05G03900 (gene) Nannochloropsis oceanica

Overview
NameNO05G03900
Unique NameNO05G03900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1101
Alignment locationchr5:1005826..1006926 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1005826..1006926 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G03900 vs. NCBI_GenBank
Match: EWM27979.1 (hypothetical protein Naga_100008g35 [Nannochloropsis gaditana])

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-47
Identity = 133/356 (37.36%), Postives = 185/356 (51.97%), Query Frame = 0 
Query:   13 SANTTRTDASVPVYAAAERRRTTGSMRHVSQSPPVDRTVFHQGVLLMLAGTAVAYTAIRMVWALIRLLPFIAVGMYCMKPSLESFMESLSLRDKRSSNSGTSMSAPAPSSATSNSKPGGWLKKVVSKTIEKTSSAWTLNPVREWLYLDLGLFMLCKKKPSAFQGLSAVLGGGTASLEPKAFAIGVCSQWALLDPSTFGSPGEGSW--LKIYAYELACLLSSQWPDDKWNTFSSLPAVQRRNDTQLSAAVDAVVAATANVVGEAWKEVVEASSNQCNSNISSISSRDRHTSVVKTNSPSTDVSCKGAVAGMMEGMGNKPMMYYMHLAQEMAERGRFEEAGRAVEAGLEKTRRVLKGG 367
            +A+TT    S P    A   RT G M+  SQSP VD T F QG++L+ AGT  A+  +R + AL+R LP +A+GMY  +PS ESF+E LS  +K    +  +  +   ++ TS +  G W K V+ KT+ K+S A   NPVR+W  LD+GLF++CKK+ SA + LSA L G +       FA+G+C QW LLDP       +  W   K+YAY  AC    +  D  W+   S  A +R + TQ +       A  A +  EA ++VV      C  +       D+    V    P  D    G V     G    PM  ++  AQ +AERG F+EAGR VE G++  R  L+GG
Sbjct:   67 NASTTGPATSAPPQQPAPPLRTAGRMQRTSQSPSVDDTAFQQGLILLAAGTLAAFVLMRTLSALLRSLPLLALGMYLSRPSFESFVEFLSTSEKIGDLNCATKKSSLNAAGTSTASSGVWFKNVIRKTLGKSSEALFTNPVRDWKCLDMGLFVVCKKQKSALEELSANLTGRSTPYGKHVFAVGMCRQWLLLDPGCLDPRKKEEWPLWKLYAYNAACFCYMRVSDAWWHALPSFAAHERSSRTQATLG----TATAAAMAEEALQDVV----GGCLDDSRKYGGVDQ----VDVGVPVRDRRV-GMVGNCTPGADGPPMRRHLQAAQALAERGNFQEAGRTVEMGVKDARGQLRGG 409
The following BLAST results are available for this feature:
BLAST of NO05G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27979.11.800e-4737.36hypothetical protein Naga_100008g35 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03900.1NO05G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100008g35gene2551Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03900.1NO05G03900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03900 ID=NO05G03900|Name=NO05G03900|organism=Nannochloropsis oceanica|type=gene|length=1101bp
ATGACAAAGGGGCCATTGACCAACAAGGACAAGCCGAGTGCCAACACGAC
CAGGACGGATGCATCCGTCCCAGTATATGCAGCCGCGGAACGTCGCAGGA
CAACAGGCAGCATGCGACACGTTTCCCAAAGCCCTCCAGTTGACAGAACC
GTGTTTCATCAAGGCGTCTTGTTGATGTTGGCGGGTACCGCGGTCGCATA
CACAGCAATTCGTATGGTATGGGCTTTAATTCGCTTGCTTCCTTTCATTG
CGGTCGGCATGTACTGTATGAAACCAAGCCTCGAGAGCTTCATGGAGTCC
TTGTCGCTCAGGGACAAACGAAGTAGCAACAGCGGCACCAGCATGTCTGC
TCCCGCTCCTTCGTCTGCCACAAGCAACAGCAAGCCGGGCGGTTGGCTGA
AGAAAGTGGTCAGCAAGACGATCGAGAAAACATCTTCTGCCTGGACGCTA
AACCCTGTGCGTGAATGGTTGTACCTCGATTTAGGTCTCTTCATGCTATG
CAAAAAGAAACCCTCAGCTTTTCAAGGACTATCAGCGGTCTTGGGCGGGG
GTACGGCGTCACTAGAGCCCAAGGCCTTTGCGATAGGCGTATGTTCCCAA
TGGGCTTTACTGGATCCATCCACGTTTGGCTCGCCTGGAGAGGGTTCGTG
GTTGAAGATCTATGCGTACGAATTAGCATGCTTGCTCTCGTCGCAATGGC
CTGATGACAAATGGAACACATTTTCGTCTTTGCCCGCCGTGCAAAGACGA
AATGACACCCAGCTTTCCGCAGCTGTCGATGCAGTGGTAGCCGCGACTGC
AAATGTGGTTGGAGAGGCGTGGAAAGAGGTGGTGGAAGCCAGCAGTAACC
AGTGCAACAGCAACATCAGCAGCATCAGCAGCAGGGACAGGCATACCAGC
GTTGTCAAAACCAACAGCCCTTCAACCGATGTAAGCTGCAAAGGCGCGGT
GGCGGGGATGATGGAGGGGATGGGAAACAAGCCCATGATGTATTATATGC
ACCTCGCACAAGAAATGGCGGAACGTGGTCGATTCGAAGAGGCAGGGAGG
GCCGTTGAGGCCGGGTTGGAGAAAACGAGGAGGGTCCTAAAGGGGGGGTA
G
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protein sequence of NO05G03900.1

>NO05G03900.1-protein ID=NO05G03900.1-protein|Name=NO05G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MTKGPLTNKDKPSANTTRTDASVPVYAAAERRRTTGSMRHVSQSPPVDRT
VFHQGVLLMLAGTAVAYTAIRMVWALIRLLPFIAVGMYCMKPSLESFMES
LSLRDKRSSNSGTSMSAPAPSSATSNSKPGGWLKKVVSKTIEKTSSAWTL
NPVREWLYLDLGLFMLCKKKPSAFQGLSAVLGGGTASLEPKAFAIGVCSQ
WALLDPSTFGSPGEGSWLKIYAYELACLLSSQWPDDKWNTFSSLPAVQRR
NDTQLSAAVDAVVAATANVVGEAWKEVVEASSNQCNSNISSISSRDRHTS
VVKTNSPSTDVSCKGAVAGMMEGMGNKPMMYYMHLAQEMAERGRFEEAGR
AVEAGLEKTRRVLKGG*
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Synonyms
Publications