NO05G03900.1, NO05G03900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03900.1
Unique NameNO05G03900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1101
Alignment locationchr5:1005826..1006926 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1005826..1006926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03900.1 vs.
Match: EWM27979.1 (hypothetical protein Naga_100008g35 [Nannochloropsis gaditana])

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-47
Identity = 133/356 (37.36%), Postives = 185/356 (51.97%), Query Frame = 0 
Query:   13 SANTTRTDASVPVYAAAERRRTTGSMRHVSQSPPVDRTVFHQGVLLMLAGTAVAYTAIRMVWALIRLLPFIAVGMYCMKPSLESFMESLSLRDKRSSNSGTSMSAPAPSSATSNSKPGGWLKKVVSKTIEKTSSAWTLNPVREWLYLDLGLFMLCKKKPSAFQGLSAVLGGGTASLEPKAFAIGVCSQWALLDPSTFGSPGEGSW--LKIYAYELACLLSSQWPDDKWNTFSSLPAVQRRNDTQLSAAVDAVVAATANVVGEAWKEVVEASSNQCNSNISSISSRDRHTSVVKTNSPSTDVSCKGAVAGMMEGMGNKPMMYYMHLAQEMAERGRFEEAGRAVEAGLEKTRRVLKGG 367
            +A+TT    S P    A   RT G M+  SQSP VD T F QG++L+ AGT  A+  +R + AL+R LP +A+GMY  +PS ESF+E LS  +K    +  +  +   ++ TS +  G W K V+ KT+ K+S A   NPVR+W  LD+GLF++CKK+ SA + LSA L G +       FA+G+C QW LLDP       +  W   K+YAY  AC    +  D  W+   S  A +R + TQ +       A  A +  EA ++VV      C  +       D+    V    P  D    G V     G    PM  ++  AQ +AERG F+EAGR VE G++  R  L+GG
Sbjct:   67 NASTTGPATSAPPQQPAPPLRTAGRMQRTSQSPSVDDTAFQQGLILLAAGTLAAFVLMRTLSALLRSLPLLALGMYLSRPSFESFVEFLSTSEKIGDLNCATKKSSLNAAGTSTASSGVWFKNVIRKTLGKSSEALFTNPVRDWKCLDMGLFVVCKKQKSALEELSANLTGRSTPYGKHVFAVGMCRQWLLLDPGCLDPRKKEEWPLWKLYAYNAACFCYMRVSDAWWHALPSFAAHERSSRTQATLG----TATAAAMAEEALQDVV----GGCLDDSRKYGGVDQ----VDVGVPVRDRRV-GMVGNCTPGADGPPMRRHLQAAQALAERGNFQEAGRTVEMGVKDARGQLRGG 409
The following BLAST results are available for this feature:
BLAST of NO05G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27979.11.800e-4737.36hypothetical protein Naga_100008g35 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03900NO05G03900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03900.1NO05G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03900.1.cds1NO05G03900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03900.1 ID=NO05G03900.1|Name=NO05G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp
ATGACAAAGGGGCCATTGACCAACAAGGACAAGCCGAGTGCCAACACGAC
CAGGACGGATGCATCCGTCCCAGTATATGCAGCCGCGGAACGTCGCAGGA
CAACAGGCAGCATGCGACACGTTTCCCAAAGCCCTCCAGTTGACAGAACC
GTGTTTCATCAAGGCGTCTTGTTGATGTTGGCGGGTACCGCGGTCGCATA
CACAGCAATTCGTATGGTATGGGCTTTAATTCGCTTGCTTCCTTTCATTG
CGGTCGGCATGTACTGTATGAAACCAAGCCTCGAGAGCTTCATGGAGTCC
TTGTCGCTCAGGGACAAACGAAGTAGCAACAGCGGCACCAGCATGTCTGC
TCCCGCTCCTTCGTCTGCCACAAGCAACAGCAAGCCGGGCGGTTGGCTGA
AGAAAGTGGTCAGCAAGACGATCGAGAAAACATCTTCTGCCTGGACGCTA
AACCCTGTGCGTGAATGGTTGTACCTCGATTTAGGTCTCTTCATGCTATG
CAAAAAGAAACCCTCAGCTTTTCAAGGACTATCAGCGGTCTTGGGCGGGG
GTACGGCGTCACTAGAGCCCAAGGCCTTTGCGATAGGCGTATGTTCCCAA
TGGGCTTTACTGGATCCATCCACGTTTGGCTCGCCTGGAGAGGGTTCGTG
GTTGAAGATCTATGCGTACGAATTAGCATGCTTGCTCTCGTCGCAATGGC
CTGATGACAAATGGAACACATTTTCGTCTTTGCCCGCCGTGCAAAGACGA
AATGACACCCAGCTTTCCGCAGCTGTCGATGCAGTGGTAGCCGCGACTGC
AAATGTGGTTGGAGAGGCGTGGAAAGAGGTGGTGGAAGCCAGCAGTAACC
AGTGCAACAGCAACATCAGCAGCATCAGCAGCAGGGACAGGCATACCAGC
GTTGTCAAAACCAACAGCCCTTCAACCGATGTAAGCTGCAAAGGCGCGGT
GGCGGGGATGATGGAGGGGATGGGAAACAAGCCCATGATGTATTATATGC
ACCTCGCACAAGAAATGGCGGAACGTGGTCGATTCGAAGAGGCAGGGAGG
GCCGTTGAGGCCGGGTTGGAGAAAACGAGGAGGGTCCTAAAGGGGGGGTA
G
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protein sequence of NO05G03900.1

>NO05G03900.1-protein ID=NO05G03900.1-protein|Name=NO05G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MTKGPLTNKDKPSANTTRTDASVPVYAAAERRRTTGSMRHVSQSPPVDRT
VFHQGVLLMLAGTAVAYTAIRMVWALIRLLPFIAVGMYCMKPSLESFMES
LSLRDKRSSNSGTSMSAPAPSSATSNSKPGGWLKKVVSKTIEKTSSAWTL
NPVREWLYLDLGLFMLCKKKPSAFQGLSAVLGGGTASLEPKAFAIGVCSQ
WALLDPSTFGSPGEGSWLKIYAYELACLLSSQWPDDKWNTFSSLPAVQRR
NDTQLSAAVDAVVAATANVVGEAWKEVVEASSNQCNSNISSISSRDRHTS
VVKTNSPSTDVSCKGAVAGMMEGMGNKPMMYYMHLAQEMAERGRFEEAGR
AVEAGLEKTRRVLKGG*
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mRNA from alignment at chr5:1005826..1006926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03900.1 ID=NO05G03900.1|Name=NO05G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp|location=Sequence derived from alignment at chr5:1005826..1006926- (Nannochloropsis oceanica)
ATGACAAAGGGGCCATTGACCAACAAGGACAAGCCGAGTGCCAACACGAC
CAGGACGGATGCATCCGTCCCAGTATATGCAGCCGCGGAACGTCGCAGGA
CAACAGGCAGCATGCGACACGTTTCCCAAAGCCCTCCAGTTGACAGAACC
GTGTTTCATCAAGGCGTCTTGTTGATGTTGGCGGGTACCGCGGTCGCATA
CACAGCAATTCGTATGGTATGGGCTTTAATTCGCTTGCTTCCTTTCATTG
CGGTCGGCATGTACTGTATGAAACCAAGCCTCGAGAGCTTCATGGAGTCC
TTGTCGCTCAGGGACAAACGAAGTAGCAACAGCGGCACCAGCATGTCTGC
TCCCGCTCCTTCGTCTGCCACAAGCAACAGCAAGCCGGGCGGTTGGCTGA
AGAAAGTGGTCAGCAAGACGATCGAGAAAACATCTTCTGCCTGGACGCTA
AACCCTGTGCGTGAATGGTTGTACCTCGATTTAGGTCTCTTCATGCTATG
CAAAAAGAAACCCTCAGCTTTTCAAGGACTATCAGCGGTCTTGGGCGGGG
GTACGGCGTCACTAGAGCCCAAGGCCTTTGCGATAGGCGTATGTTCCCAA
TGGGCTTTACTGGATCCATCCACGTTTGGCTCGCCTGGAGAGGGTTCGTG
GTTGAAGATCTATGCGTACGAATTAGCATGCTTGCTCTCGTCGCAATGGC
CTGATGACAAATGGAACACATTTTCGTCTTTGCCCGCCGTGCAAAGACGA
AATGACACCCAGCTTTCCGCAGCTGTCGATGCAGTGGTAGCCGCGACTGC
AAATGTGGTTGGAGAGGCGTGGAAAGAGGTGGTGGAAGCCAGCAGTAACC
AGTGCAACAGCAACATCAGCAGCATCAGCAGCAGGGACAGGCATACCAGC
GTTGTCAAAACCAACAGCCCTTCAACCGATGTAAGCTGCAAAGGCGCGGT
GGCGGGGATGATGGAGGGGATGGGAAACAAGCCCATGATGTATTATATGC
ACCTCGCACAAGAAATGGCGGAACGTGGTCGATTCGAAGAGGCAGGGAGG
GCCGTTGAGGCCGGGTTGGAGAAAACGAGGAGGGTCCTAAAGGGGGGGTA
G
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Coding sequence (CDS) from alignment at chr5:1005826..1006926-

>NO05G03900.1 ID=NO05G03900.1|Name=NO05G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr5:1005826..1006926- (Nannochloropsis oceanica)
ATGACAAAGGGGCCATTGACCAACAAGGACAAGCCGAGTGCCAACACGAC
CAGGACGGATGCATCCGTCCCAGTATATGCAGCCGCGGAACGTCGCAGGA
CAACAGGCAGCATGCGACACGTTTCCCAAAGCCCTCCAGTTGACAGAACC
GTGTTTCATCAAGGCGTCTTGTTGATGTTGGCGGGTACCGCGGTCGCATA
CACAGCAATTCGTATGGTATGGGCTTTAATTCGCTTGCTTCCTTTCATTG
CGGTCGGCATGTACTGTATGAAACCAAGCCTCGAGAGCTTCATGGAGTCC
TTGTCGCTCAGGGACAAACGAAGTAGCAACAGCGGCACCAGCATGTCTGC
TCCCGCTCCTTCGTCTGCCACAAGCAACAGCAAGCCGGGCGGTTGGCTGA
AGAAAGTGGTCAGCAAGACGATCGAGAAAACATCTTCTGCCTGGACGCTA
AACCCTGTGCGTGAATGGTTGTACCTCGATTTAGGTCTCTTCATGCTATG
CAAAAAGAAACCCTCAGCTTTTCAAGGACTATCAGCGGTCTTGGGCGGGG
GTACGGCGTCACTAGAGCCCAAGGCCTTTGCGATAGGCGTATGTTCCCAA
TGGGCTTTACTGGATCCATCCACGTTTGGCTCGCCTGGAGAGGGTTCGTG
GTTGAAGATCTATGCGTACGAATTAGCATGCTTGCTCTCGTCGCAATGGC
CTGATGACAAATGGAACACATTTTCGTCTTTGCCCGCCGTGCAAAGACGA
AATGACACCCAGCTTTCCGCAGCTGTCGATGCAGTGGTAGCCGCGACTGC
AAATGTGGTTGGAGAGGCGTGGAAAGAGGTGGTGGAAGCCAGCAGTAACC
AGTGCAACAGCAACATCAGCAGCATCAGCAGCAGGGACAGGCATACCAGC
GTTGTCAAAACCAACAGCCCTTCAACCGATGTAAGCTGCAAAGGCGCGGT
GGCGGGGATGATGGAGGGGATGGGAAACAAGCCCATGATGTATTATATGC
ACCTCGCACAAGAAATGGCGGAACGTGGTCGATTCGAAGAGGCAGGGAGG
GCCGTTGAGGCCGGGTTGGAGAAAACGAGGAGGGTCCTAAAGGGGGGGTA
G
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Synonyms
Publications