NO05G03880, NO05G03880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_005856311.1 (large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526] >EKU20052.1 large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 191.4 bits (485), Expect = 2.000e-45 Identity = 104/143 (72.73%), Postives = 113/143 (79.02%), Query Frame = 0 Query: 1 MLSRSWVGSSKSLLARTVCS--PASCAVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAA 142 MLSR W S+ S V S PAS A IT+ A + WGG+SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQ +AGNILVRQRGLTFKAG+GVGVGRDYTLFALRPGWVKF+YDVH KK YV IA SPHPH+Q A + Sbjct: 3 MLSRIWSPSTWSSTRHLVHSGTPASNAAITS-ALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVS 144
BLAST of NO05G03880 vs. NCBI_GenBank
Match: EWM28003.1 (50s ribosomal protein l27 [Nannochloropsis gaditana]) HSP 1 Score: 191.4 bits (485), Expect = 2.000e-45 Identity = 104/143 (72.73%), Postives = 113/143 (79.02%), Query Frame = 0 Query: 1 MLSRSWVGSSKSLLARTVCS--PASCAVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAA 142 MLSR W S+ S V S PAS A IT+ A + WGG+SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQ +AGNILVRQRGLTFKAG+GVGVGRDYTLFALRPGWVKF+YDVH KK YV IA SPHPH+Q A + Sbjct: 33 MLSRIWSPSTWSSTRHLVHSGTPASNAAITS-ALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVS 174
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_009495884.1 (hypothetical protein H696_03751 [Fonticula alba] >KCV69319.1 hypothetical protein H696_03751 [Fonticula alba]) HSP 1 Score: 112.1 bits (279), Expect = 1.600e-21 Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 0 Query: 25 AVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128 A + + AP G A ++ R A+KKAGGSS+NGRDSPGQRLGVK+FGG+ AG+I+VRQRG F GE VG+GRD+TLFAL G VKF+++ RK+ V+I Sbjct: 18 AQLASAVAAPLGAAGPMMAQRFASKKAGGSSRNGRDSPGQRLGVKRFGGEEVKAGSIIVRQRGTQFMPGENVGMGRDHTLFALTEGCVKFTWNEDRKRFAVNI 120
BLAST of NO05G03880 vs. NCBI_GenBank
Match: ORX79168.1 (hypothetical protein K493DRAFT_293404 [Basidiobolus meristosporus CBS 931.73] >ORY01012.1 hypothetical protein K493DRAFT_335125 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 110.2 bits (274), Expect = 6.000e-21 Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0 Query: 27 ITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHR 121 ++ G FG GG+ R ATK++GGSSKNGRDS G+RLGVKKFGG+ + GNILVRQRG F AG VG+G+D+TLFAL+PG+V+F D R Sbjct: 19 VSKGLNPGFGGIIGGIQVRWATKRSGGSSKNGRDSAGRRLGVKKFGGEFVVPGNILVRQRGTKFHAGLNVGIGKDHTLFALQPGYVQFYVDPKR 112
BLAST of NO05G03880 vs. NCBI_GenBank
Match: CEP00502.1 (hypothetical protein PBRA_001556 [Plasmodiophora brassicae]) HSP 1 Score: 109.8 bits (273), Expect = 7.800e-21 Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 0 Query: 45 RTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128 R ATKKA GS+KNGRDSPGQRLG+KK GGQ+ G I+ RQRG ++AGEGVG+GRD+TLFALR G ++F Y H KK++ + Sbjct: 18 RWATKKAAGSTKNGRDSPGQRLGLKKSGGQSVFQGQIIARQRGTKWRAGEGVGIGRDHTLFALREGQLRFHYHPHLKKTWAFV 100
BLAST of NO05G03880 vs. NCBI_GenBank
Match: ETL47529.1 (50S ribosomal protein L27 [Phytophthora parasitica] >ETM53800.1 50S ribosomal protein L27 [Phytophthora parasitica] >ETP24097.1 50S ribosomal protein L27 [Phytophthora parasitica CJ01A1] >ETP31549.1 50S ribosomal protein L27 [Phytophthora parasitica P10297]) HSP 1 Score: 109.0 bits (271), Expect = 1.300e-20 Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = 0 Query: 28 TTGATAPFGLAWGGV---SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128 + TA G A GV S R ATKKAGGS+KNGRDS +RLGVKKFGGQ+ LAGNI++RQRG + G GVG+G+D+T+FA R G+V+F Y+V +K+ V + Sbjct: 14 SASTTARVGAATEGVYTLSRRWATKKAGGSTKNGRDSESKRLGVKKFGGQSVLAGNIIIRQRGTKYHPGTGVGLGKDHTIFATRDGFVRFWYNVPKKRQEVSV 116
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_002906013.1 (50S ribosomal protein L27 [Phytophthora infestans T30-4] >EEY67365.1 50S ribosomal protein L27 [Phytophthora infestans T30-4]) HSP 1 Score: 107.5 bits (267), Expect = 3.900e-20 Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 0 Query: 19 CSPASCAVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128 CS A A + T + L S R A+KKAGGS+KNGRDS +RLGVKKFGGQ+ LAGNI++RQRG + AG GVG+G+D+T+FA R G+V+F Y+V +K+ V + Sbjct: 13 CSAAMTARVGTATEEVYTL-----SRRWASKKAGGSTKNGRDSESKRLGVKKFGGQSVLAGNIIIRQRGTKYHAGTGVGLGKDHTIFAKRDGFVRFWYNVPKKRQEVSV 116
BLAST of NO05G03880 vs. NCBI_GenBank
Match: CEP12484.1 (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 107.1 bits (266), Expect = 5.100e-20 Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 0 Query: 45 RTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDV-HRKKSYVHIADSSPHPHEQLAA 141 R ATKK+GGSS+NGRDS G+RLGVKKFGGQ + GNI+VRQRG F G+ VG+G+D+TL+AL PG+V+F D H K+ YV I HE+ AA Sbjct: 16 RWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHPGDNVGMGKDHTLYALEPGYVRFYNDAQHPKRRYVGIV------HEREAA 106
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_009536173.1 (hypothetical protein PHYSODRAFT_288786 [Phytophthora sojae] >EGZ08001.1 hypothetical protein PHYSODRAFT_288786 [Phytophthora sojae]) HSP 1 Score: 106.7 bits (265), Expect = 6.600e-20 Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 0 Query: 42 VSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128 +S R ATKKAGGS+KNGRDS +RLGVKKFGG++ LAGNI++RQRG + G GVG+G+D+T+FA R G+V+F Y+ +K+ V + Sbjct: 28 LSRRWATKKAGGSTKNGRDSESKRLGVKKFGGESVLAGNIIIRQRGTKYHPGTGVGIGKDHTIFATRDGFVRFWYNTPKKRQEVSV 113
BLAST of NO05G03880 vs. NCBI_GenBank
Match: EPB85208.1 (50S ribosomal protein L27 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 106.7 bits (265), Expect = 6.600e-20 Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0 Query: 42 VSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDV-HRKKSYVHI 128 + R ATKK+GGSS+NGRDS G+RLGVKKFGGQ + GNI+VRQRG F AG+ VG+G+D+TL+AL PG+V+F D H K+ V I Sbjct: 40 IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGI 126 The following BLAST results are available for this feature:
BLAST of NO05G03880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03880 ID=NO05G03880|Name=NO05G03880|organism=Nannochloropsis oceanica|type=gene|length=465bpback to top protein sequence of NO05G03880.1 >NO05G03880.1-protein ID=NO05G03880.1-protein|Name=NO05G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bpback to top Synonyms
Publications
|