NO05G03880, NO05G03880 (gene) Nannochloropsis oceanica

Overview
NameNO05G03880
Unique NameNO05G03880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr5:1004505..1004969 +

Link to JBrowse

Properties
Property NameValue
DescriptionLarge subunit ribosomal protein L27
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1004505..1004969 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001684Ribosomal_L27
Homology
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_005856311.1 (large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526] >EKU20052.1 large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 191.4 bits (485), Expect = 2.000e-45
Identity = 104/143 (72.73%), Postives = 113/143 (79.02%), Query Frame = 0
Query:    1 MLSRSWVGSSKSLLARTVCS--PASCAVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAA 142
            MLSR W  S+ S     V S  PAS A IT+ A     + WGG+SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQ  +AGNILVRQRGLTFKAG+GVGVGRDYTLFALRPGWVKF+YDVH KK YV IA  SPHPH+Q A +
Sbjct:    3 MLSRIWSPSTWSSTRHLVHSGTPASNAAITS-ALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVS 144          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: EWM28003.1 (50s ribosomal protein l27 [Nannochloropsis gaditana])

HSP 1 Score: 191.4 bits (485), Expect = 2.000e-45
Identity = 104/143 (72.73%), Postives = 113/143 (79.02%), Query Frame = 0
Query:    1 MLSRSWVGSSKSLLARTVCS--PASCAVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAA 142
            MLSR W  S+ S     V S  PAS A IT+ A     + WGG+SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQ  +AGNILVRQRGLTFKAG+GVGVGRDYTLFALRPGWVKF+YDVH KK YV IA  SPHPH+Q A +
Sbjct:   33 MLSRIWSPSTWSSTRHLVHSGTPASNAAITS-ALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVS 174          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_009495884.1 (hypothetical protein H696_03751 [Fonticula alba] >KCV69319.1 hypothetical protein H696_03751 [Fonticula alba])

HSP 1 Score: 112.1 bits (279), Expect = 1.600e-21
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 0
Query:   25 AVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128
            A + +   AP G A   ++ R A+KKAGGSS+NGRDSPGQRLGVK+FGG+   AG+I+VRQRG  F  GE VG+GRD+TLFAL  G VKF+++  RK+  V+I
Sbjct:   18 AQLASAVAAPLGAAGPMMAQRFASKKAGGSSRNGRDSPGQRLGVKRFGGEEVKAGSIIVRQRGTQFMPGENVGMGRDHTLFALTEGCVKFTWNEDRKRFAVNI 120          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: ORX79168.1 (hypothetical protein K493DRAFT_293404 [Basidiobolus meristosporus CBS 931.73] >ORY01012.1 hypothetical protein K493DRAFT_335125 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 110.2 bits (274), Expect = 6.000e-21
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0
Query:   27 ITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHR 121
            ++ G    FG   GG+  R ATK++GGSSKNGRDS G+RLGVKKFGG+  + GNILVRQRG  F AG  VG+G+D+TLFAL+PG+V+F  D  R
Sbjct:   19 VSKGLNPGFGGIIGGIQVRWATKRSGGSSKNGRDSAGRRLGVKKFGGEFVVPGNILVRQRGTKFHAGLNVGIGKDHTLFALQPGYVQFYVDPKR 112          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: CEP00502.1 (hypothetical protein PBRA_001556 [Plasmodiophora brassicae])

HSP 1 Score: 109.8 bits (273), Expect = 7.800e-21
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 0
Query:   45 RTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128
            R ATKKA GS+KNGRDSPGQRLG+KK GGQ+   G I+ RQRG  ++AGEGVG+GRD+TLFALR G ++F Y  H KK++  +
Sbjct:   18 RWATKKAAGSTKNGRDSPGQRLGLKKSGGQSVFQGQIIARQRGTKWRAGEGVGIGRDHTLFALREGQLRFHYHPHLKKTWAFV 100          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: ETL47529.1 (50S ribosomal protein L27 [Phytophthora parasitica] >ETM53800.1 50S ribosomal protein L27 [Phytophthora parasitica] >ETP24097.1 50S ribosomal protein L27 [Phytophthora parasitica CJ01A1] >ETP31549.1 50S ribosomal protein L27 [Phytophthora parasitica P10297])

HSP 1 Score: 109.0 bits (271), Expect = 1.300e-20
Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = 0
Query:   28 TTGATAPFGLAWGGV---SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128
            +   TA  G A  GV   S R ATKKAGGS+KNGRDS  +RLGVKKFGGQ+ LAGNI++RQRG  +  G GVG+G+D+T+FA R G+V+F Y+V +K+  V +
Sbjct:   14 SASTTARVGAATEGVYTLSRRWATKKAGGSTKNGRDSESKRLGVKKFGGQSVLAGNIIIRQRGTKYHPGTGVGLGKDHTIFATRDGFVRFWYNVPKKRQEVSV 116          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_002906013.1 (50S ribosomal protein L27 [Phytophthora infestans T30-4] >EEY67365.1 50S ribosomal protein L27 [Phytophthora infestans T30-4])

HSP 1 Score: 107.5 bits (267), Expect = 3.900e-20
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 0
Query:   19 CSPASCAVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128
            CS A  A + T     + L     S R A+KKAGGS+KNGRDS  +RLGVKKFGGQ+ LAGNI++RQRG  + AG GVG+G+D+T+FA R G+V+F Y+V +K+  V +
Sbjct:   13 CSAAMTARVGTATEEVYTL-----SRRWASKKAGGSTKNGRDSESKRLGVKKFGGQSVLAGNIIIRQRGTKYHAGTGVGLGKDHTIFAKRDGFVRFWYNVPKKRQEVSV 116          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: CEP12484.1 (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 107.1 bits (266), Expect = 5.100e-20
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 0
Query:   45 RTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDV-HRKKSYVHIADSSPHPHEQLAA 141
            R ATKK+GGSS+NGRDS G+RLGVKKFGGQ  + GNI+VRQRG  F  G+ VG+G+D+TL+AL PG+V+F  D  H K+ YV I       HE+ AA
Sbjct:   16 RWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHPGDNVGMGKDHTLYALEPGYVRFYNDAQHPKRRYVGIV------HEREAA 106          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: XP_009536173.1 (hypothetical protein PHYSODRAFT_288786 [Phytophthora sojae] >EGZ08001.1 hypothetical protein PHYSODRAFT_288786 [Phytophthora sojae])

HSP 1 Score: 106.7 bits (265), Expect = 6.600e-20
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 0
Query:   42 VSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHI 128
            +S R ATKKAGGS+KNGRDS  +RLGVKKFGG++ LAGNI++RQRG  +  G GVG+G+D+T+FA R G+V+F Y+  +K+  V +
Sbjct:   28 LSRRWATKKAGGSTKNGRDSESKRLGVKKFGGESVLAGNIIIRQRGTKYHPGTGVGIGKDHTIFATRDGFVRFWYNTPKKRQEVSV 113          
BLAST of NO05G03880 vs. NCBI_GenBank
Match: EPB85208.1 (50S ribosomal protein L27 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 106.7 bits (265), Expect = 6.600e-20
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0
Query:   42 VSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDV-HRKKSYVHI 128
            +  R ATKK+GGSS+NGRDS G+RLGVKKFGGQ  + GNI+VRQRG  F AG+ VG+G+D+TL+AL PG+V+F  D  H K+  V I
Sbjct:   40 IQVRWATKKSGGSSRNGRDSAGRRLGVKKFGGQEVIPGNIIVRQRGTKFHAGDNVGMGKDHTLYALEPGYVRFYKDAQHPKRRLVGI 126          
The following BLAST results are available for this feature:
BLAST of NO05G03880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856311.12.000e-4572.73large subunit ribosomal protein L27, partial [Nann... [more]
EWM28003.12.000e-4572.7350s ribosomal protein l27 [Nannochloropsis gaditan... [more]
XP_009495884.11.600e-2157.28hypothetical protein H696_03751 [Fonticula alba] >... [more]
ORX79168.16.000e-2159.57hypothetical protein K493DRAFT_293404 [Basidiobolu... [more]
CEP00502.17.800e-2162.65hypothetical protein PBRA_001556 [Plasmodiophora b... [more]
ETL47529.11.300e-2056.3150S ribosomal protein L27 [Phytophthora parasitica... [more]
XP_002906013.13.900e-2053.2150S ribosomal protein L27 [Phytophthora infestans ... [more]
CEP12484.15.100e-2058.76hypothetical protein [Parasitella parasitica][more]
XP_009536173.16.600e-2058.14hypothetical protein PHYSODRAFT_288786 [Phytophtho... [more]
EPB85208.16.600e-2060.9250S ribosomal protein L27 [Mucor circinelloides f.... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03880.1NO05G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629442gene_3197Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g34gene2550Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03880.1NO05G03880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03880 ID=NO05G03880|Name=NO05G03880|organism=Nannochloropsis oceanica|type=gene|length=465bp
ATGCTGTCGAGGTCGTGGGTCGGAAGCAGTAAAAGCTTGCTGGCTAGAAC
TGTTTGCTCTCCCGCTTCTTGCGCCGTCATTACCACTGGTGCTACTGCTC
CGTTTGGCCTCGCGTGGGGCGGCGTGAGCTGCCGCACGGCAACAAAGAAG
GCAGGTGGTTCGTCCAAGAACGGTCGGGACTCACCAGGGCAGCGCTTGGG
CGTCAAGAAGTTTGGGGGGCAGACAGCGCTGGCGGGCAACATCTTGGTGA
GGCAACGAGGCCTTACGTTCAAGGCCGGGGAGGGGGTGGGCGTGGGGAGG
GACTACACATTATTCGCCTTGCGGCCGGGATGGGTGAAGTTTTCGTACGA
CGTGCACCGCAAGAAGTCGTACGTGCATATAGCCGATTCGAGTCCGCATC
CCCACGAGCAGCTAGCAGCAGCAGGAGCAACAGGAGCTGCAGCGACTAAA
GCGGCATCGTCGTGA
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protein sequence of NO05G03880.1

>NO05G03880.1-protein ID=NO05G03880.1-protein|Name=NO05G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MLSRSWVGSSKSLLARTVCSPASCAVITTGATAPFGLAWGGVSCRTATKK
AGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGR
DYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAAGATGAAATK
AASS*
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Synonyms
Publications