NO05G03880.1, NO05G03880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03880.1
Unique NameNO05G03880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr5:1004505..1004969 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1004505..1004969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03880.1 vs.
Match: XP_005856311.1 (large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526]; EKU20052.1 large subunit ribosomal protein L27, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 191.4 bits (485), Expect = 2.000e-45
Identity = 104/143 (72.73%), Postives = 113/143 (79.02%), Query Frame = 0 
Query:    1 MLSRSWVGSSKSLLARTVCS--PASCAVITTGATAPFGLAWGGVSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGRDYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAA 142
            MLSR W  S+ S     V S  PAS A IT+ A     + WGG+SCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQ  +AGNILVRQRGLTFKAG+GVGVGRDYTLFALRPGWVKF+YDVH KK YV IA  SPHPH+Q A +
Sbjct:    3 MLSRIWSPSTWSSTRHLVHSGTPASNAAITS-ALRRSEMVWGGMSCRTATKKAGGSSKNGRDSPGQRLGVKKFGGQEVIAGNILVRQRGLTFKAGDGVGVGRDYTLFALRPGWVKFTYDVHSKKKYVRIAACSPHPHDQKAVS 144
The following BLAST results are available for this feature:
BLAST of NO05G03880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856311.12.000e-4572.73large subunit ribosomal protein L27, partial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03880NO05G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03880.1NO05G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03880.1.cds1NO05G03880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03880.1 ID=NO05G03880.1|Name=NO05G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp
ATGCTGTCGAGGTCGTGGGTCGGAAGCAGTAAAAGCTTGCTGGCTAGAAC
TGTTTGCTCTCCCGCTTCTTGCGCCGTCATTACCACTGGTGCTACTGCTC
CGTTTGGCCTCGCGTGGGGCGGCGTGAGCTGCCGCACGGCAACAAAGAAG
GCAGGTGGTTCGTCCAAGAACGGTCGGGACTCACCAGGGCAGCGCTTGGG
CGTCAAGAAGTTTGGGGGGCAGACAGCGCTGGCGGGCAACATCTTGGTGA
GGCAACGAGGCCTTACGTTCAAGGCCGGGGAGGGGGTGGGCGTGGGGAGG
GACTACACATTATTCGCCTTGCGGCCGGGATGGGTGAAGTTTTCGTACGA
CGTGCACCGCAAGAAGTCGTACGTGCATATAGCCGATTCGAGTCCGCATC
CCCACGAGCAGCTAGCAGCAGCAGGAGCAACAGGAGCTGCAGCGACTAAA
GCGGCATCGTCGTGA
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protein sequence of NO05G03880.1

>NO05G03880.1-protein ID=NO05G03880.1-protein|Name=NO05G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MLSRSWVGSSKSLLARTVCSPASCAVITTGATAPFGLAWGGVSCRTATKK
AGGSSKNGRDSPGQRLGVKKFGGQTALAGNILVRQRGLTFKAGEGVGVGR
DYTLFALRPGWVKFSYDVHRKKSYVHIADSSPHPHEQLAAAGATGAAATK
AASS*
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mRNA from alignment at chr5:1004505..1004969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03880.1 ID=NO05G03880.1|Name=NO05G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp|location=Sequence derived from alignment at chr5:1004505..1004969+ (Nannochloropsis oceanica)
ATGCTGTCGAGGTCGTGGGTCGGAAGCAGTAAAAGCTTGCTGGCTAGAAC
TGTTTGCTCTCCCGCTTCTTGCGCCGTCATTACCACTGGTGCTACTGCTC
CGTTTGGCCTCGCGTGGGGCGGCGTGAGCTGCCGCACGGCAACAAAGAAG
GCAGGTGGTTCGTCCAAGAACGGTCGGGACTCACCAGGGCAGCGCTTGGG
CGTCAAGAAGTTTGGGGGGCAGACAGCGCTGGCGGGCAACATCTTGGTGA
GGCAACGAGGCCTTACGTTCAAGGCCGGGGAGGGGGTGGGCGTGGGGAGG
GACTACACATTATTCGCCTTGCGGCCGGGATGGGTGAAGTTTTCGTACGA
CGTGCACCGCAAGAAGTCGTACGTGCATATAGCCGATTCGAGTCCGCATC
CCCACGAGCAGCTAGCAGCAGCAGGAGCAACAGGAGCTGCAGCGACTAAA
GCGGCATCGTCGTGA
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Coding sequence (CDS) from alignment at chr5:1004505..1004969+

>NO05G03880.1 ID=NO05G03880.1|Name=NO05G03880.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr5:1004505..1004969+ (Nannochloropsis oceanica)
ATGCTGTCGAGGTCGTGGGTCGGAAGCAGTAAAAGCTTGCTGGCTAGAAC
TGTTTGCTCTCCCGCTTCTTGCGCCGTCATTACCACTGGTGCTACTGCTC
CGTTTGGCCTCGCGTGGGGCGGCGTGAGCTGCCGCACGGCAACAAAGAAG
GCAGGTGGTTCGTCCAAGAACGGTCGGGACTCACCAGGGCAGCGCTTGGG
CGTCAAGAAGTTTGGGGGGCAGACAGCGCTGGCGGGCAACATCTTGGTGA
GGCAACGAGGCCTTACGTTCAAGGCCGGGGAGGGGGTGGGCGTGGGGAGG
GACTACACATTATTCGCCTTGCGGCCGGGATGGGTGAAGTTTTCGTACGA
CGTGCACCGCAAGAAGTCGTACGTGCATATAGCCGATTCGAGTCCGCATC
CCCACGAGCAGCTAGCAGCAGCAGGAGCAACAGGAGCTGCAGCGACTAAA
GCGGCATCGTCGTGA
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Synonyms
Publications