NO05G03870, NO05G03870 (gene) Nannochloropsis oceanica

Overview
NameNO05G03870
Unique NameNO05G03870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length936
Alignment locationchr5:1003228..1004163 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhycoerythrobilin:ferredoxin oxidoreductase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1003228..1004163 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050897cobalt ion binding
GO:0016636oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0010024phytochromobilin biosynthetic process
GO:0055114oxidation-reduction process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR009249Ferredoxin-dep_bilin_Rdtase
Homology
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: EWM27984.1 (phycoerythrobilin:ferredoxin oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 367.1 bits (941), Expect = 5.500e-98
Identity = 181/267 (67.79%), Postives = 215/267 (80.52%), Query Frame = 0 
Query:   52 SPPA------VEIYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVP-AVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPMSSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFDQAERKIIEE 312
            +PPA      V IY+GFW EAKAMMDARQ++LPW+  +IP DLQRK CTT  KGKR +T TV E+ AY VPGRIRQARAAVLST+P   PP VLNFVVFP+   +LP+FGADFV+LPGGHL+VLDFQP+SS+SL VAE AL+++H  Y ALLP   GEIP+AARSFFSPY++F+R E D LV+T V  AF+AYFS YLDLVE A P+PVEE  R  E+ EGH+ YATYRAVNDPARGMLTRMYG  WTERLIYEVLF+QA+R++ ++
Sbjct:   49 APPAPSSNRPVVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYTALLPS-HGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADRELEDD 314
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_015174906.1 (phycoerythrobilin:ferredoxin oxidoreductase [Oscillatoria nigro-viridis] >AFZ05579.1 phycoerythrobilin:ferredoxin oxidoreductase [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 188.0 bits (476), Expect = 4.600e-44
Identity = 115/255 (45.10%), Postives = 153/255 (60.00%), Query Frame = 0 
Query:   58 IYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFDQAERKIIE 311
            +Y+ F + A  ++ AR    P+    IP   +RKE  T GKGK+ +   V   HA+    ++RQ RAA +    A+   VLNFV+FP+   +LP FGAD V LPGGHLI LD QP+   ++  +   + +  +  KY+  L P GG+ P+ A+ FFSP FL+ R ++   VQT VFEAF+ Y   YLDLVEQA+  PV +  R  E++E  +RY  YRA  DPARGM TR YGEEWTE  I+  LFD  ER I E
Sbjct:    3 LYQPFLDYAIPLLKARLDLAPY---PIPAGFERKEALT-GKGKK-EQLVVTTSHAFK-SSKLRQIRAAHVEGGDAL--QVLNFVIFPQLNYDLPFFGADLVTLPGGHLIALDMQPLFHEAAYQKQYSEPILPIFNKYQKEL-PWGGDFPDEAKPFFSPAFLWTRPKETEAVQTTVFEAFKDYLQAYLDLVEQAQ--PVTDSQRLGEILEAQRRYIDYRAAKDPARGMFTRFYGEEWTEEYIHGFLFD-LERHIPE 245
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_026786765.1 (MULTISPECIES: phycoerythrobilin:ferredoxin oxidoreductase [Planktothrix] >CUR27152.1 Phycoerythrobilin:ferredoxin oxidoreductase [Planktothrix rubescens])

HSP 1 Score: 182.6 bits (462), Expect = 1.900e-42
Identity = 107/247 (43.32%), Postives = 151/247 (61.13%), Query Frame = 0 
Query:   58 IYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFD 303
            +Y+ F + A  ++  +   LP     IP   ++KE  T GKGKR     +   + Y  P ++RQ RAA +    A+   VLNFV+FP    +LP FGAD V LPGGHLI LD QP+  +S+  +   + +  +  +Y+  L P GG+ PE A+ FFSP FL+ R ++  +V+T VFEAF+AY   YL+ VEQA+P+   E+  R+++++  KRY +YRA  DPARGM TR YGEEWTE  I+  LFD
Sbjct:    3 LYQPFLDYALTLLKEK---LPLTSYPIPPGFEQKEEIT-GKGKRQQV-VITTSYGYQTP-KLRQIRAAHVQGGEAL--QVLNFVIFPHLNYDLPFFGADLVTLPGGHLIALDMQPLFHNSTYQQKYTEPILPIFQQYQQHL-PWGGDFPEEAQPFFSPAFLWTRPQETEVVKTHVFEAFKAYLQAYLEFVEQAQPIDNSEQ--RQDILQAQKRYVSYRAEKDPARGMFTRFYGEEWTEEYIHGFLFD 238
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: OSX71627.1 (hypothetical protein BU14_0518s0019 [Porphyra umbilicalis])

HSP 1 Score: 181.4 bits (459), Expect = 4.300e-42
Identity = 114/249 (45.78%), Postives = 142/249 (57.03%), Query Frame = 0 
Query:   57 EIYKGFWEEAKAMMDARQATL-PWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPMSSSSLRVAE--DALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFD 303
            ++Y  FW+ A  +M  R   L P+    IP     KE   SGKGKR    T  + +AY  P ++RQ RAA +    A+   VLN+V+FP     +P FGAD V LPGGHLI +D QP+  +    AE  DA K VH K++A+L P GG+ P  A  FFSP FL+ R   D  +Q  VF+AF+ Y   YLD VE+A PV   EE     +   HK Y TYRA  DPARGM  R YGEEWTE  I+  LFD
Sbjct:   23 DLYTPFWDYAVKVMKERLPDLGPY---PIPDGYVHKE-AMSGKGKRAALVT-TDAYAYQTP-KLRQIRAAHVQGGAAL--QVLNYVMFPHMNYRIPFFGADLVTLPGGHLIAIDMQPLFHTDEYKAEFYDAFKAVHAKHQAVL-PWGGDFPAEAAKFFSPVFLWTRTTGDEAIQGPVFDAFKDYLHTYLDFVEKAEPVSDPEE--IAAIQASHKAYLTYRAEKDPARGMFLRFYGEEWTEEFIHGFLFD 260
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_083623259.1 (phycoerythrobilin:ferredoxin oxidoreductase [Planktothrix serta] >CUR19066.1 Phycoerythrobilin:ferredoxin oxidoreductase [Planktothrix serta PCC 8927])

HSP 1 Score: 179.5 bits (454), Expect = 1.600e-41
Identity = 106/247 (42.91%), Postives = 148/247 (59.92%), Query Frame = 0 
Query:   58 IYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFD 303
            +Y+ F + A  +++ +   LP     IP   ++KE  T G GKR     +   + Y  P ++RQ RAA +    A+   VLNFV+FP    +LP FGAD V LPGGHLI LD QP+  +S+  +     +  +   Y+  L P GG+ PE A  FFSP FL+ R ++  +V+T VFEAF+AY   YL+ VEQA+P+   E+  R+++++  KRY +YRA  DPARGM TR YGEEWTE  I+  LFD
Sbjct:    3 LYQPFLDYALTLLEEK---LPLTSYPIPPGFEQKEQVT-GTGKRQQV-VMTTSYGYQTP-KLRQIRAAHVQGGEAL--QVLNFVIFPHLNYDLPFFGADLVTLPGGHLIALDMQPLFHNSAYQQKYTHPILPIFQNYQQHL-PWGGDFPEEAHPFFSPAFLWTRPQETEVVKTHVFEAFKAYLQAYLEFVEQAQPIDNSEQ--RQDILQAQKRYVSYRAEKDPARGMFTRFYGEEWTEEYIHGFLFD 238
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_096830794.1 (phycoerythrobilin:ferredoxin oxidoreductase [Tychonema bourrellyi] >PHX55863.1 phycoerythrobilin:ferredoxin oxidoreductase [Tychonema bourrellyi FEM_GT703])

HSP 1 Score: 178.7 bits (452), Expect = 2.800e-41
Identity = 106/247 (42.91%), Postives = 145/247 (58.70%), Query Frame = 0 
Query:   58 IYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFD 303
            +Y+ F + A  ++  R    P+    IP   + KEC T GKGK+ +   V   HA+    ++RQ RAA +    A+   VLNFV+FP+   +LP FGAD V LPGGHLI LD QP+  + +  +   D +  +  KY+  L P GG+ PE A+ FFSP FL+ R ++   VQT VF AF+ Y   YLDLV++A+  PV +  R  E+++  + Y  YRA  DPARGM  R YGEEWTE  I+  LFD
Sbjct:    3 LYQPFLDYAIPLLTERLDLAPY---PIPAGFESKECIT-GKGKK-EQLVVTTSHAFK-SSKLRQIRAAHVQGGDAL--QVLNFVIFPQINYDLPFFGADLVTLPGGHLIALDMQPLFHNPAYQKQYSDPILPIFNKYQKDL-PWGGDFPEEAKQFFSPAFLWTRPKETEAVQTTVFAAFQDYLQAYLDLVDRAQ--PVTDSQRLAEILQAQRNYINYRAAKDPARGMFLRFYGEEWTEEYIHGFLFD 238
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_012599695.1 (phycoerythrobilin:ferredoxin oxidoreductase [Cyanothece sp. PCC 7424] >ACK73794.1 ferredoxin-dependent bilin reductase (plasmid) [Cyanothece sp. PCC 7424])

HSP 1 Score: 177.9 bits (450), Expect = 4.700e-41
Identity = 107/248 (43.15%), Postives = 148/248 (59.68%), Query Frame = 0 
Query:   56 VEIYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLF 302
            + IY+ F + A  ++  + +  P+    IP   +RKE   SGKGK+ +T  V   +AY  P ++RQ RAA +    A+   VLNFV+FP+   +LP FGAD V LPGGHLI +D QP+  +++      D +  +   Y+A L P GG+ P+ A+ FFSP FL+ R ++  +V+T VFEAF+ Y   YL  VEQA  V   E+   KE++   +RY  YRA  DPARGM TR YGEEWTE  I+  LF
Sbjct:    1 MSIYQPFLDYAITLLTEKLSLTPY---PIPAGFERKE-EMSGKGKKQET-VVTTSYAYQAP-KLRQIRAAHVQGGNAL--QVLNFVIFPDLNYDLPFFGADLVTLPGGHLIAIDMQPLFHNAAYQHKYSDPILPLFNAYQAHL-PWGGDFPDDAKPFFSPAFLWTRPQETEVVKTRVFEAFKDYLGAYLQFVEQAEAVKKPEQ--LKEILASQRRYIGYRAAKDPARGMFTRFYGEEWTEEYIHGFLF 237
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_106458818.1 (phycoerythrobilin:ferredoxin oxidoreductase [Aphanothece hegewaldii] >PSF33086.1 phycoerythrobilin:ferredoxin oxidoreductase [Aphanothece hegewaldii CCALA 016])

HSP 1 Score: 177.9 bits (450), Expect = 4.700e-41
Identity = 107/247 (43.32%), Postives = 144/247 (58.30%), Query Frame = 0 
Query:   58 IYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFD 303
            +Y+ F + A A++  R    P+    IP   + KE  T GKGKR +T T    + +  P ++RQ RAA +    A+   VLNFV+FP    +LP FG D V LPGGHLI LD QP+  +    +   D +  +   Y+ +L P GG+ P+ A+ FFSP FL+ R ++  LV+T VF+ F+ Y   YL  VEQA   PV +EG+  E+ E H RY  YRA  DPARGM TR+YG EWTE  I+  LFD
Sbjct:    3 LYQPFLDYAIALLQDRLDLSPY---PIPSGFEYKENIT-GKGKRQETVTTTS-YGFQSP-KLRQIRAAHVQGGNAL--QVLNFVIFPRLNYDLPFFGGDLVTLPGGHLIALDMQPLFHNEEYQKKYSDPVLPIFQSYQEVL-PWGGDFPDEAKQFFSPAFLWTRPQETELVETKVFDVFKEYLQAYLKFVEQAE--PVTDEGKLAEIREAHLRYIGYRAEKDPARGMFTRLYGSEWTEEYIHGFLFD 238
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_015141907.1 (phycoerythrobilin:ferredoxin oxidoreductase [Pleurocapsa minor] >AFY75599.1 phycoerythrobilin:ferredoxin oxidoreductase [Pleurocapsa sp. PCC 7327])

HSP 1 Score: 176.4 bits (446), Expect = 1.400e-40
Identity = 105/246 (42.68%), Postives = 148/246 (60.16%), Query Frame = 0 
Query:   58 IYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLF 302
            +Y+ F + A A++  R    P+    IP   + KE  T GKGK+ + + V   +A+  P ++RQ RAA +    ++   VLNFV+FP P  +LP FGAD V LPGGHLI LD QP+   ++  +   + +  +   Y+  L P GG+ PE A+ FFSP FL+ R ++  +VQT V EAF+ Y   YLD VE+A   PV +  +R+E++E  +RY  YRA  DPARGM TR+YG EWTE  I+  LF
Sbjct:    3 LYQPFLDYAIALLKERLDLSPY---PIPEGFEYKE-GTMGKGKKQE-AVVTTSYAFKSP-KLRQIRAAHVRGGASL--QVLNFVIFPHPAYDLPFFGADLVTLPGGHLIALDMQPLFHDTAYQQKYSEPILPIFKAYQQHL-PWGGDFPEEAKPFFSPAFLWTRPQETEVVQTRVLEAFKDYLQAYLDFVEKAE--PVTDSQQREEILEAQRRYIAYRAAKDPARGMFTRLYGSEWTEEYIHGFLF 237
[Close]
BLAST of NO05G03870 vs. NCBI_GenBank
Match: WP_013324032.1 (phycoerythrobilin:ferredoxin oxidoreductase [Cyanothece sp. PCC 7822] >ADN15964.1 ferredoxin-dependent bilin reductase [Cyanothece sp. PCC 7822])

HSP 1 Score: 175.6 bits (444), Expect = 2.300e-40
Identity = 105/247 (42.51%), Postives = 147/247 (59.51%), Query Frame = 0 
Query:   58 IYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPM--SSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFD 303
            +Y+ F + A A++  + +  P+    IP   +RKE   SGKGK+ +T  +   +AY  P ++RQ RAA +    A+   VLNFV+FP+   +LP FGAD V LPGGHLI LD QP+   ++      D +  +   Y+  L P GG+ PE A+ FFSP FL+ R ++  +V+T VF+AF+ Y   YL+ VEQA  V   E+   +E++   +RY  YRA  DPARGM TR YG EWTE  I+  LFD
Sbjct:    3 LYQPFLDYAIALLSEKLSLTPY---PIPAGFERKE-ELSGKGKKQET-VITTSYAYQAP-KLRQIRAAHVQGGNAL--QVLNFVIFPDLNYDLPFFGADLVTLPGGHLIALDMQPLFHDAAYQHKYSDPILPIFKAYQEHL-PWGGDFPEDAKPFFSPAFLWTRPQETEMVETRVFDAFKDYLGAYLEFVEQAEAVNDPEQ--LEEILAAQRRYIGYRADKDPARGMFTRFYGPEWTEEYIHGFLFD 238
The following BLAST results are available for this feature:
BLAST of NO05G03870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27984.15.500e-9867.79phycoerythrobilin:ferredoxin oxidoreductase [Nanno... [more]
WP_015174906.14.600e-4445.10phycoerythrobilin:ferredoxin oxidoreductase [Oscil... [more]
WP_026786765.11.900e-4243.32MULTISPECIES: phycoerythrobilin:ferredoxin oxidore... [more]
OSX71627.14.300e-4245.78hypothetical protein BU14_0518s0019 [Porphyra umbi... [more]
WP_083623259.11.600e-4142.91phycoerythrobilin:ferredoxin oxidoreductase [Plank... [more]
WP_096830794.12.800e-4142.91phycoerythrobilin:ferredoxin oxidoreductase [Tycho... [more]
WP_012599695.14.700e-4143.15phycoerythrobilin:ferredoxin oxidoreductase [Cyano... [more]
WP_106458818.14.700e-4143.32phycoerythrobilin:ferredoxin oxidoreductase [Aphan... [more]
WP_015141907.11.400e-4042.68phycoerythrobilin:ferredoxin oxidoreductase [Pleur... [more]
WP_013324032.12.300e-4042.51phycoerythrobilin:ferredoxin oxidoreductase [Cyano... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003471NSK003471Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03870.1NO05G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584891gene_3196Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g33gene2549Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03870.1NO05G03870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03870 ID=NO05G03870|Name=NO05G03870|organism=Nannochloropsis oceanica|type=gene|length=936bp
ATGACGGCCACCAGCAGCTTGCCACGCCCGTCACGCCTGCTCCTCCTTTT
GCGAGTTTGCTTTCTATCCTCGTCCATATCCTGTGCTTTCCTTCTACCAG
CGCCTTCCCCCTCACCATCGACCGCTATTTTCGCCGTCCCCTCCCCTACG
ACCTCACCACCCGCAGTCGAGATCTACAAAGGCTTTTGGGAAGAGGCCAA
AGCCATGATGGACGCGCGACAAGCTACCCTCCCCTGGCAATGTTCATCAA
TACCTGTAGACCTACAACGCAAGGAATGCACCACATCGGGGAAAGGTAAA
CGACCAGACACGTCGACGGTGGTCGAGATTCACGCCTATGCCGTGCCAGG
TCGCATTCGACAAGCCCGGGCCGCTGTCCTCTCCACCGTACCAGCCGTCC
CTCCGAATGTATTGAATTTTGTGGTGTTTCCTGAACCAGAGTTGGAATTG
CCTGTATTTGGGGCAGATTTTGTAGCTTTACCTGGAGGACATCTAATTGT
CCTCGATTTTCAGCCTATGTCGAGCTCGTCCTTGCGCGTGGCGGAAGACG
CATTAAAGGAGGTACACTTTAAGTATAAGGCGTTGTTACCACCGATCGGA
GGAGAGATCCCCGAGGCGGCGCGGTCATTTTTTTCGCCGTATTTTTTGTT
CGTAAGGGCGGAAGATGATGGGTTGGTTCAGACTGTTGTATTCGAGGCGT
TCAGGGCTTACTTTTCTATTTATCTCGATTTGGTAGAACAGGCGAGGCCG
GTGCCTGTGGAGGAGGAGGGGAGAAGAAAGGAGATGATAGAAGGGCATAA
GAGGTATGCGACGTACAGGGCGGTGAATGACCCGGCGAGGGGAATGTTGA
CCAGGATGTATGGGGAGGAGTGGACCGAAAGGCTAATTTATGAGGTGTTG
TTTGATCAAGCCGAAAGGAAGATAATTGAGGAGTAG
back to top

protein sequence of NO05G03870.1

>NO05G03870.1-protein ID=NO05G03870.1-protein|Name=NO05G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTATSSLPRPSRLLLLLRVCFLSSSISCAFLLPAPSPSPSTAIFAVPSPT
TSPPAVEIYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGK
RPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELEL
PVFGADFVALPGGHLIVLDFQPMSSSSLRVAEDALKEVHFKYKALLPPIG
GEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARP
VPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVL
FDQAERKIIEE*
back to top
Synonyms
Publications