NO05G03870.1, NO05G03870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03870.1
Unique NameNO05G03870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length936
Alignment locationchr5:1003228..1004163 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1003228..1004163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03870.1 vs.
Match: EWM27984.1 (phycoerythrobilin:ferredoxin oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 369.8 bits (948), Expect = 8.500e-99
Identity = 194/311 (62.38%), Postives = 236/311 (75.88%), Query Frame = 0 
Query:    8 PRPSRLLLLLRVCFLSSSISCAFLLPAPSPSPSTAIF------AVPSPTTSPPAVEIYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGKRPDTSTVVEIHAYAVPGRIRQARAAVLSTVPA-VPPNVLNFVVFPEPELELPVFGADFVALPGGHLIVLDFQPMSSSSLRVAEDALKEVHFKYKALLPPIGGEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARPVPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVLFDQAERKIIEE 312
            P  S L +LL    ++ S S AF + AP    S  +       A P+P+++ P V IY+GFW EAKAMMDARQ++LPW+  +IP DLQRK CTT  KGKR +T TV E+ AY VPGRIRQARAAVLST+P   PP VLNFVVFP+   +LP+FGADFV+LPGGHL+VLDFQP+SS+SL VAE AL+++H  Y ALLP   GEIP+AARSFFSPY++F+R E D LV+T V  AF+AYFS YLDLVE A P+PVEE  R  E+ EGH+ YATYRAVNDPARGMLTRMYG  WTERLIYEVLF+QA+R++ ++
Sbjct:    9 PHSSSLTILL---LITISHSRAFYILAPLVERSRTVLSAVSSDAPPAPSSNRPVV-IYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYTALLPS-HGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADRELEDD 314
The following BLAST results are available for this feature:
BLAST of NO05G03870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27984.18.500e-9962.38phycoerythrobilin:ferredoxin oxidoreductase [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03870NO05G03870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03870.1NO05G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03870.1.cds1NO05G03870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03870.1 ID=NO05G03870.1|Name=NO05G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
ATGACGGCCACCAGCAGCTTGCCACGCCCGTCACGCCTGCTCCTCCTTTT
GCGAGTTTGCTTTCTATCCTCGTCCATATCCTGTGCTTTCCTTCTACCAG
CGCCTTCCCCCTCACCATCGACCGCTATTTTCGCCGTCCCCTCCCCTACG
ACCTCACCACCCGCAGTCGAGATCTACAAAGGCTTTTGGGAAGAGGCCAA
AGCCATGATGGACGCGCGACAAGCTACCCTCCCCTGGCAATGTTCATCAA
TACCTGTAGACCTACAACGCAAGGAATGCACCACATCGGGGAAAGGTAAA
CGACCAGACACGTCGACGGTGGTCGAGATTCACGCCTATGCCGTGCCAGG
TCGCATTCGACAAGCCCGGGCCGCTGTCCTCTCCACCGTACCAGCCGTCC
CTCCGAATGTATTGAATTTTGTGGTGTTTCCTGAACCAGAGTTGGAATTG
CCTGTATTTGGGGCAGATTTTGTAGCTTTACCTGGAGGACATCTAATTGT
CCTCGATTTTCAGCCTATGTCGAGCTCGTCCTTGCGCGTGGCGGAAGACG
CATTAAAGGAGGTACACTTTAAGTATAAGGCGTTGTTACCACCGATCGGA
GGAGAGATCCCCGAGGCGGCGCGGTCATTTTTTTCGCCGTATTTTTTGTT
CGTAAGGGCGGAAGATGATGGGTTGGTTCAGACTGTTGTATTCGAGGCGT
TCAGGGCTTACTTTTCTATTTATCTCGATTTGGTAGAACAGGCGAGGCCG
GTGCCTGTGGAGGAGGAGGGGAGAAGAAAGGAGATGATAGAAGGGCATAA
GAGGTATGCGACGTACAGGGCGGTGAATGACCCGGCGAGGGGAATGTTGA
CCAGGATGTATGGGGAGGAGTGGACCGAAAGGCTAATTTATGAGGTGTTG
TTTGATCAAGCCGAAAGGAAGATAATTGAGGAGTAG
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protein sequence of NO05G03870.1

>NO05G03870.1-protein ID=NO05G03870.1-protein|Name=NO05G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTATSSLPRPSRLLLLLRVCFLSSSISCAFLLPAPSPSPSTAIFAVPSPT
TSPPAVEIYKGFWEEAKAMMDARQATLPWQCSSIPVDLQRKECTTSGKGK
RPDTSTVVEIHAYAVPGRIRQARAAVLSTVPAVPPNVLNFVVFPEPELEL
PVFGADFVALPGGHLIVLDFQPMSSSSLRVAEDALKEVHFKYKALLPPIG
GEIPEAARSFFSPYFLFVRAEDDGLVQTVVFEAFRAYFSIYLDLVEQARP
VPVEEEGRRKEMIEGHKRYATYRAVNDPARGMLTRMYGEEWTERLIYEVL
FDQAERKIIEE*
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mRNA from alignment at chr5:1003228..1004163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03870.1 ID=NO05G03870.1|Name=NO05G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=936bp|location=Sequence derived from alignment at chr5:1003228..1004163- (Nannochloropsis oceanica)
ATGACGGCCACCAGCAGCTTGCCACGCCCGTCACGCCTGCTCCTCCTTTT
GCGAGTTTGCTTTCTATCCTCGTCCATATCCTGTGCTTTCCTTCTACCAG
CGCCTTCCCCCTCACCATCGACCGCTATTTTCGCCGTCCCCTCCCCTACG
ACCTCACCACCCGCAGTCGAGATCTACAAAGGCTTTTGGGAAGAGGCCAA
AGCCATGATGGACGCGCGACAAGCTACCCTCCCCTGGCAATGTTCATCAA
TACCTGTAGACCTACAACGCAAGGAATGCACCACATCGGGGAAAGGTAAA
CGACCAGACACGTCGACGGTGGTCGAGATTCACGCCTATGCCGTGCCAGG
TCGCATTCGACAAGCCCGGGCCGCTGTCCTCTCCACCGTACCAGCCGTCC
CTCCGAATGTATTGAATTTTGTGGTGTTTCCTGAACCAGAGTTGGAATTG
CCTGTATTTGGGGCAGATTTTGTAGCTTTACCTGGAGGACATCTAATTGT
CCTCGATTTTCAGCCTATGTCGAGCTCGTCCTTGCGCGTGGCGGAAGACG
CATTAAAGGAGGTACACTTTAAGTATAAGGCGTTGTTACCACCGATCGGA
GGAGAGATCCCCGAGGCGGCGCGGTCATTTTTTTCGCCGTATTTTTTGTT
CGTAAGGGCGGAAGATGATGGGTTGGTTCAGACTGTTGTATTCGAGGCGT
TCAGGGCTTACTTTTCTATTTATCTCGATTTGGTAGAACAGGCGAGGCCG
GTGCCTGTGGAGGAGGAGGGGAGAAGAAAGGAGATGATAGAAGGGCATAA
GAGGTATGCGACGTACAGGGCGGTGAATGACCCGGCGAGGGGAATGTTGA
CCAGGATGTATGGGGAGGAGTGGACCGAAAGGCTAATTTATGAGGTGTTG
TTTGATCAAGCCGAAAGGAAGATAATTGAGGAGTAG
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Coding sequence (CDS) from alignment at chr5:1003228..1004163-

>NO05G03870.1 ID=NO05G03870.1|Name=NO05G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr5:1003228..1004163- (Nannochloropsis oceanica)
ATGACGGCCACCAGCAGCTTGCCACGCCCGTCACGCCTGCTCCTCCTTTT
GCGAGTTTGCTTTCTATCCTCGTCCATATCCTGTGCTTTCCTTCTACCAG
CGCCTTCCCCCTCACCATCGACCGCTATTTTCGCCGTCCCCTCCCCTACG
ACCTCACCACCCGCAGTCGAGATCTACAAAGGCTTTTGGGAAGAGGCCAA
AGCCATGATGGACGCGCGACAAGCTACCCTCCCCTGGCAATGTTCATCAA
TACCTGTAGACCTACAACGCAAGGAATGCACCACATCGGGGAAAGGTAAA
CGACCAGACACGTCGACGGTGGTCGAGATTCACGCCTATGCCGTGCCAGG
TCGCATTCGACAAGCCCGGGCCGCTGTCCTCTCCACCGTACCAGCCGTCC
CTCCGAATGTATTGAATTTTGTGGTGTTTCCTGAACCAGAGTTGGAATTG
CCTGTATTTGGGGCAGATTTTGTAGCTTTACCTGGAGGACATCTAATTGT
CCTCGATTTTCAGCCTATGTCGAGCTCGTCCTTGCGCGTGGCGGAAGACG
CATTAAAGGAGGTACACTTTAAGTATAAGGCGTTGTTACCACCGATCGGA
GGAGAGATCCCCGAGGCGGCGCGGTCATTTTTTTCGCCGTATTTTTTGTT
CGTAAGGGCGGAAGATGATGGGTTGGTTCAGACTGTTGTATTCGAGGCGT
TCAGGGCTTACTTTTCTATTTATCTCGATTTGGTAGAACAGGCGAGGCCG
GTGCCTGTGGAGGAGGAGGGGAGAAGAAAGGAGATGATAGAAGGGCATAA
GAGGTATGCGACGTACAGGGCGGTGAATGACCCGGCGAGGGGAATGTTGA
CCAGGATGTATGGGGAGGAGTGGACCGAAAGGCTAATTTATGAGGTGTTG
TTTGATCAAGCCGAAAGGAAGATAATTGAGGAGTAG
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Synonyms
Publications