NO05G03670, NO05G03670 (gene) Nannochloropsis oceanica

Overview
NameNO05G03670
Unique NameNO05G03670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2552
Alignment locationchr5:963328..965879 -

Link to JBrowse

Properties
Property NameValue
DescriptionHyaluronan/mRNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:963328..965879 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006861HABP4_PAIRBP1-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
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BLAST of NO05G03670 vs. NCBI_GenBank
Match: EWM27970.1 (Hyaluronan/mRNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 83.6 bits (205), Expect = 1.200e-12
Identity = 97/192 (50.52%), Postives = 112/192 (58.33%), Query Frame = 0 
Query:   46 RGGRVHANGKVEPREPKAHARDEHRQRDRQDGTGRGAKKQHRNGSGKYNWGEDGENDGVVEAIDPVGGDEEEELAPVEGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTKSYLEYQAELVEQKKRNVELFGEVKEREVDTSEFDKLV-LVEKEAEKILGGEAGAKKKAASAQRATSRQILNASFRSGG 237
            RGG        E REPK HARD       +DGTGRG ++QHRNG+GK+NWGE+      VE I+P+   E+           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      EYQAE+ E K++N ELFG  KEREVD+SE  KL                           A+ RQ+LNASFRSGG
Sbjct:    9 RGGAGRQENGREAREPKQHARDXXXXXXXRDGTGRGGRRQHRNGTGKFNWGEE-----AVEPIEPLA--EDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYQAEMAEVKRKNAELFGTAKEREVDSSELSKLTXXXXXXXXXXXXXXXXXXXXXXXXXXASGRQLLNASFRSGG 193
The following BLAST results are available for this feature:
BLAST of NO05G03670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27970.11.200e-1250.52Hyaluronan/mRNA-binding protein [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003490NSK003490Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03670.1NO05G03670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|399747gene_3175Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g9gene2529Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03670.1NO05G03670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03670 ID=NO05G03670|Name=NO05G03670|organism=Nannochloropsis oceanica|type=gene|length=2552bp
GTGTCATTTGGGAGTAATCGTGTGAACTGTGAGGCGTTTCGATGGAATGA
ATTGCGATTTTGGGGGGCATGTTGTTGGCGAGAATTTGCAGGGGGGAGGG
AGATAGAGGGGGATTGTGAGTCTTGTGCGGTGGTCAGTGTGGTCTTGGCA
ATTCTCTTCCCATGCTTGCTAGACTCTCAACTGTGCCGGACAGCACCACG
TGTGTCTTGATCATAAACCTGCCGTGGTCGTGGACAGGCAGCAACCCTTG
GCTCGGTTTGGCACCCTTGACAAGCCAGCAAACCGCCCGCCAAGGTGCTC
TCTTCCTGGTTGCCAAGTTGGAAGAATCAACTTTCTTCATCGGCCGACCT
CAACAAGCAACCCAACCCCTTATCAGATACTTACCCTCCCTCTGACGCTC
TCTCCCGCACTTTCAAAGACAGTTAATATATAAGCAAGCCTGAAATAGAA
AGGAGGCGCGCATTTGTGCTGTCGCCACGACCAAGCCAACTCAGCCAAAG
AAGCCGGCGTGAGCTCGTCCGACCTCACATTTACCCCACCTCCACCGCTC
AACGATGgtaagtacattggttaaggcaaaatacagagaaatctgtcagt
gtataaattgtctgatagctgcattgtgtccttcggcagacggagtcggc
agacaataggtctgcaaaacgctgatagacatctgctcgatgtacgtaag
gggcatcaccatagccatgaccgttcagaaaaagttccatttcttgtcag
gaagcctattgactgaacatgctaagttaatgccctctttttacgccgcc
acgtagcttggtcccttgcaagtcccctttatcctacgccctgaccccta
tcattccccaaccccaccaaccaacacagTCCAACCGCTTCGCGCTCCTC
GCTGACGATGATGACGATGGAGGCCCCCCTCAAAAGCCTGTCGCGGTTGC
CATCTCGGCCTCTAAGAAAATCGAGGACACTGTCGCTCGTAGTGGTGCCA
AGGGTGGGCAACGTGGTGGTCGTGTGCATGCGAACGGCAAGGTGGAGCCC
CGTGAGCCTAAGGCACATGCGCGTGATGAGCACCGCCAGCGTGATCGACA
GGATGGGACGGGGCGGGGGGCGAAGAAACAGCACCGTAATGGCAGCGGGA
AGTATAATTGGGGGGAGGATGGAGAGAATGATGGGGTTGTCGAAGCCATT
GATCCCGTGGGAGGCGACGAGGAGGAGGAGTTGGCGCCTGTCGAAGGCGT
GGAGGGGGAAGGAGAGGAGGTAGAGGGGAGGGGGATGAAGAAGACGAGGG
AGGAGAGGGAGAAGGCCCCTGAGCCCGAGCCTGAGCCTGAGATCCCTACG
AAGAGCTACTTGGAGTACCAGGCGGAGCTTGTGGAGCAAAAGAAGAGGAA
TGTCGAGCTGTTCGGGGAGGTGAAGGAGCGAGAGGTTGATACTTCCGAAT
TTGACAAGCTGGTGTTGGTGGAAAAGGAGGCGGAGAAAATTTTGGGGGGG
GAGGCAGGGGCGAAGAAGAAAGCGGCTTCGGCACAGAGAGCGACAAGTCG
TCAAATTTTGAATGCGAGTTTTCGATCTGGAGGGGTTGATACGGGCCGTG
GAGAGAGGGGAGGGAAGGGAGGAAGGGGGGAGGGGGGGAGGGGGGGAGGA
CGAGGAGGAGATAGGGGGGGTGGGCGGGGAATCAGGAGGGAGGGAGAGAG
GGAGGGGTCAGGTGGACGTGGTCGGGGGGAGGGGGGACGAGGGCGAGGAG
GAAGGGAGGGTTACCGCGGTGGGCGAGGTGGGCGTGGTGGTGGAGGGGGG
AGGTTGAATATTGATGATACTAACATGTTTCCGACGCTCTAAGGTGAGAG
ATAGAGAGTGAAGGACGTGGGAATGGCGTGTCTGTGTATTTGTCTGTGTC
TGTATCCATGCTGTGTATATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTAGGGGAGAGTTGGGGTTAATTTCA
GAAGTGTTTGCAGAAAACACGAGAGCTATAACGACAAACGATTACGACGG
TCTGCAAGAGAAAAGGACAGAAGGGAAGGAGAAGTAAGTCTACTTTTAAG
GATTAGAGAAATTAAAAAGGCAGGCAAGTAAGGTGACCCAACACAACAAA
GGGTAACTACGGGGGAAAGGGCCAAAGTGCCACTGCATTCACTATTTTAA
GAAAGCTCCACTGAGCGAGGATGAGCAGGGGGCTGGGCGCTCAACACATA
AATGAGGGAAGGAGGATAATGCGGAACGCCTGGTCTGTCGAGCGATGAGG
ATTGGTAGTTTTTCATGAGGCCCTTCGATAGACAGAGTAAGCAAGACCGA
CACGGACTTAAAACAGGATTAAACGACGCGAGGAGATGCAAGGAAATGAG
AAAGCAAGCAAGCAACGACAACAAGAGAGACGAGACGCGGTTGTTCGGAA
ACCCAAGATAAGACAAGAAGAGAGAAGAGAAGAGAACAGATGTCTAGAAA
TCTTGAGACTCCGAGTCATTGAAAGAATGAACGACGAATGCTTCTACGAA
GA
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protein sequence of NO05G03670.1

>NO05G03670.1-protein ID=NO05G03670.1-protein|Name=NO05G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSNRFALLADDDDDGGPPQKPVAVAISASKKIEDTVARSGAKGGQRGGRV
HANGKVEPREPKAHARDEHRQRDRQDGTGRGAKKQHRNGSGKYNWGEDGE
NDGVVEAIDPVGGDEEEELAPVEGVEGEGEEVEGRGMKKTREEREKAPEP
EPEPEIPTKSYLEYQAELVEQKKRNVELFGEVKEREVDTSEFDKLVLVEK
EAEKILGGEAGAKKKAASAQRATSRQILNASFRSGGVDTGRGERGGKGGR
GEGGRGGGRGGDRGGGRGIRREGEREGSGGRGRGEGGRGRGGREGYRGGR
GGRGGGGGRLNIDDTNMFPTL*
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Synonyms
Publications