|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:963328..965879 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03670.1 vs.
Match: EWM27970.1 (Hyaluronan/mRNA-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 209.1 bits (531), Expect = 2.000e-50 Identity = 165/289 (57.09%), Postives = 195/289 (67.47%), Query Frame = 0
Query: 40 GAKGGQRGGRVHANGKVEPREPKAHARDEHRQRDRQDGTGRGAKKQHRNGSGKYNWGEDGENDGVVEAIDPVGGDEEEELAPVEGVEGEGEEVEGRGMKKTREEREKAPEPEPEPEIPTKSYLEYQAELVEQKKRNVELFGEVKEREVDTSEFDKLVLVEK-EAEKILGGEAGAKKKAASAQRATSRQILNASFRSGGVDTGRGERGGKGGRGEGGRGGGRGGDRGGGRGIRREGEREGSG-GRGRGEGGRGRGGR-----EGYRGGRGGRGGGGGRLNIDDTNMFPTL 322
G G Q GR E REPK HARDEHRQ +R+DGTGRG ++QHRNG+GK+NWGE+ VE I+P+ DEE E EG EGEGE +G+ ++++ + E E EPEPE PTKSY EYQAE+ E K++N ELFG KEREVD+SE KL +V++ E E+ GE GA ++ ASAQRA+ RQ+LNASFRSGG RGERGG+GGR GGRG GR G EGER G G GRG GE GR RGGR G RGGRGGR GGG RLNIDD +MFPTL
Sbjct: 10 GGAGRQENGR-------EAREPKQHARDEHRQHERRDGTGRGGRRQHRNGTGKFNWGEE-----AVEPIEPLAEDEEREEGEGEG-EGEGEGEDGK-LRESGRKGEGREESEPEPEPPTKSYSEYQAEMAEVKRKNAELFGTAKEREVDSSELSKLTVVKREEEEEEEEGEEGAGRRKASAQRASGRQLLNASFRSGGDSGFRGERGGRGGR--GGRGDGRRG----------EGERGGRGRGRGEGEPGR-RGGRLGGEGRGTRGGRGGR-GGGARLNIDDKSMFPTL 270
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03670.1 ID=NO05G03670.1|Name=NO05G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2230bp
GTGTCATTTGGGAGTAATCGTGTGAACTGTGAGGCGTTTCGATGGAATGA
ATTGCGATTTTGGGGGGCATGTTGTTGGCGAGAATTTGCAGGGGGGAGGG
AGATAGAGGGGGATTGTGAGTCTTGTGCGGTGGTCAGTGTGGTCTTGGCA
ATTCTCTTCCCATGCTTGCTAGACTCTCAACTGTGCCGGACAGCACCACG
TGTGTCTTGATCATAAACCTGCCGTGGTCGTGGACAGGCAGCAACCCTTG
GCTCGGTTTGGCACCCTTGACAAGCCAGCAAACCGCCCGCCAAGGTGCTC
TCTTCCTGGTTGCCAAGTTGGAAGAATCAACTTTCTTCATCGGCCGACCT
CAACAAGCAACCCAACCCCTTATCAGATACTTACCCTCCCTCTGACGCTC
TCTCCCGCACTTTCAAAGACAGTTAATATATAAGCAAGCCTGAAATAGAA
AGGAGGCGCGCATTTGTGCTGTCGCCACGACCAAGCCAACTCAGCCAAAG
AAGCCGGCGTGAGCTCGTCCGACCTCACATTTACCCCACCTCCACCGCTC
AACGATGTCCAACCGCTTCGCGCTCCTCGCTGACGATGATGACGATGGAG
GCCCCCCTCAAAAGCCTGTCGCGGTTGCCATCTCGGCCTCTAAGAAAATC
GAGGACACTGTCGCTCGTAGTGGTGCCAAGGGTGGGCAACGTGGTGGTCG
TGTGCATGCGAACGGCAAGGTGGAGCCCCGTGAGCCTAAGGCACATGCGC
GTGATGAGCACCGCCAGCGTGATCGACAGGATGGGACGGGGCGGGGGGCG
AAGAAACAGCACCGTAATGGCAGCGGGAAGTATAATTGGGGGGAGGATGG
AGAGAATGATGGGGTTGTCGAAGCCATTGATCCCGTGGGAGGCGACGAGG
AGGAGGAGTTGGCGCCTGTCGAAGGCGTGGAGGGGGAAGGAGAGGAGGTA
GAGGGGAGGGGGATGAAGAAGACGAGGGAGGAGAGGGAGAAGGCCCCTGA
GCCCGAGCCTGAGCCTGAGATCCCTACGAAGAGCTACTTGGAGTACCAGG
CGGAGCTTGTGGAGCAAAAGAAGAGGAATGTCGAGCTGTTCGGGGAGGTG
AAGGAGCGAGAGGTTGATACTTCCGAATTTGACAAGCTGGTGTTGGTGGA
AAAGGAGGCGGAGAAAATTTTGGGGGGGGAGGCAGGGGCGAAGAAGAAAG
CGGCTTCGGCACAGAGAGCGACAAGTCGTCAAATTTTGAATGCGAGTTTT
CGATCTGGAGGGGTTGATACGGGCCGTGGAGAGAGGGGAGGGAAGGGAGG
AAGGGGGGAGGGGGGGAGGGGGGGAGGACGAGGAGGAGATAGGGGGGGTG
GGCGGGGAATCAGGAGGGAGGGAGAGAGGGAGGGGTCAGGTGGACGTGGT
CGGGGGGAGGGGGGACGAGGGCGAGGAGGAAGGGAGGGTTACCGCGGTGG
GCGAGGTGGGCGTGGTGGTGGAGGGGGGAGGTTGAATATTGATGATACTA
ACATGTTTCCGACGCTCTAAGGTGAGAGATAGAGAGTGAAGGACGTGGGA
ATGGCGTGTCTGTGTATTTGTCTGTGTCTGTATCCATGCTGTGTATATCT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTAGGGGAGAGTTGGGGTTAATTTCAGAAGTGTTTGCAGAAAACACGA
GAGCTATAACGACAAACGATTACGACGGTCTGCAAGAGAAAAGGACAGAA
GGGAAGGAGAAGTAAGTCTACTTTTAAGGATTAGAGAAATTAAAAAGGCA
GGCAAGTAAGGTGACCCAACACAACAAAGGGTAACTACGGGGGAAAGGGC
CAAAGTGCCACTGCATTCACTATTTTAAGAAAGCTCCACTGAGCGAGGAT
GAGCAGGGGGCTGGGCGCTCAACACATAAATGAGGGAAGGAGGATAATGC
GGAACGCCTGGTCTGTCGAGCGATGAGGATTGGTAGTTTTTCATGAGGCC
CTTCGATAGACAGAGTAAGCAAGACCGACACGGACTTAAAACAGGATTAA
ACGACGCGAGGAGATGCAAGGAAATGAGAAAGCAAGCAAGCAACGACAAC
AAGAGAGACGAGACGCGGTTGTTCGGAAACCCAAGATAAGACAAGAAGAG
AGAAGAGAAGAGAACAGATGTCTAGAAATCTTGAGACTCCGAGTCATTGA
AAGAATGAACGACGAATGCTTCTACGAAGA back to topprotein sequence of NO05G03670.1 >NO05G03670.1-protein ID=NO05G03670.1-protein|Name=NO05G03670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSNRFALLADDDDDGGPPQKPVAVAISASKKIEDTVARSGAKGGQRGGRV
HANGKVEPREPKAHARDEHRQRDRQDGTGRGAKKQHRNGSGKYNWGEDGE
NDGVVEAIDPVGGDEEEELAPVEGVEGEGEEVEGRGMKKTREEREKAPEP
EPEPEIPTKSYLEYQAELVEQKKRNVELFGEVKEREVDTSEFDKLVLVEK
EAEKILGGEAGAKKKAASAQRATSRQILNASFRSGGVDTGRGERGGKGGR
GEGGRGGGRGGDRGGGRGIRREGEREGSGGRGRGEGGRGRGGREGYRGGR
GGRGGGGGRLNIDDTNMFPTL* back to topmRNA from alignment at chr5:963328..965879- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03670.1 ID=NO05G03670.1|Name=NO05G03670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp|location=Sequence derived from alignment at chr5:963328..965879- (Nannochloropsis oceanica)
GTGTCATTTGGGAGTAATCGTGTGAACTGTGAGGCGTTTCGATGGAATGA
ATTGCGATTTTGGGGGGCATGTTGTTGGCGAGAATTTGCAGGGGGGAGGG
AGATAGAGGGGGATTGTGAGTCTTGTGCGGTGGTCAGTGTGGTCTTGGCA
ATTCTCTTCCCATGCTTGCTAGACTCTCAACTGTGCCGGACAGCACCACG
TGTGTCTTGATCATAAACCTGCCGTGGTCGTGGACAGGCAGCAACCCTTG
GCTCGGTTTGGCACCCTTGACAAGCCAGCAAACCGCCCGCCAAGGTGCTC
TCTTCCTGGTTGCCAAGTTGGAAGAATCAACTTTCTTCATCGGCCGACCT
CAACAAGCAACCCAACCCCTTATCAGATACTTACCCTCCCTCTGACGCTC
TCTCCCGCACTTTCAAAGACAGTTAATATATAAGCAAGCCTGAAATAGAA
AGGAGGCGCGCATTTGTGCTGTCGCCACGACCAAGCCAACTCAGCCAAAG
AAGCCGGCGTGAGCTCGTCCGACCTCACATTTACCCCACCTCCACCGCTC
AACGATGGTAAGTACATTGGTTAAGGCAAAATACAGAGAAATCTGTCAGT
GTATAAATTGTCTGATAGCTGCATTGTGTCCTTCGGCAGACGGAGTCGGC
AGACAATAGGTCTGCAAAACGCTGATAGACATCTGCTCGATGTACGTAAG
GGGCATCACCATAGCCATGACCGTTCAGAAAAAGTTCCATTTCTTGTCAG
GAAGCCTATTGACTGAACATGCTAAGTTAATGCCCTCTTTTTACGCCGCC
ACGTAGCTTGGTCCCTTGCAAGTCCCCTTTATCCTACGCCCTGACCCCTA
TCATTCCCCAACCCCACCAACCAACACAGTCCAACCGCTTCGCGCTCCTC
GCTGACGATGATGACGATGGAGGCCCCCCTCAAAAGCCTGTCGCGGTTGC
CATCTCGGCCTCTAAGAAAATCGAGGACACTGTCGCTCGTAGTGGTGCCA
AGGGTGGGCAACGTGGTGGTCGTGTGCATGCGAACGGCAAGGTGGAGCCC
CGTGAGCCTAAGGCACATGCGCGTGATGAGCACCGCCAGCGTGATCGACA
GGATGGGACGGGGCGGGGGGCGAAGAAACAGCACCGTAATGGCAGCGGGA
AGTATAATTGGGGGGAGGATGGAGAGAATGATGGGGTTGTCGAAGCCATT
GATCCCGTGGGAGGCGACGAGGAGGAGGAGTTGGCGCCTGTCGAAGGCGT
GGAGGGGGAAGGAGAGGAGGTAGAGGGGAGGGGGATGAAGAAGACGAGGG
AGGAGAGGGAGAAGGCCCCTGAGCCCGAGCCTGAGCCTGAGATCCCTACG
AAGAGCTACTTGGAGTACCAGGCGGAGCTTGTGGAGCAAAAGAAGAGGAA
TGTCGAGCTGTTCGGGGAGGTGAAGGAGCGAGAGGTTGATACTTCCGAAT
TTGACAAGCTGGTGTTGGTGGAAAAGGAGGCGGAGAAAATTTTGGGGGGG
GAGGCAGGGGCGAAGAAGAAAGCGGCTTCGGCACAGAGAGCGACAAGTCG
TCAAATTTTGAATGCGAGTTTTCGATCTGGAGGGGTTGATACGGGCCGTG
GAGAGAGGGGAGGGAAGGGAGGAAGGGGGGAGGGGGGGAGGGGGGGAGGA
CGAGGAGGAGATAGGGGGGGTGGGCGGGGAATCAGGAGGGAGGGAGAGAG
GGAGGGGTCAGGTGGACGTGGTCGGGGGGAGGGGGGACGAGGGCGAGGAG
GAAGGGAGGGTTACCGCGGTGGGCGAGGTGGGCGTGGTGGTGGAGGGGGG
AGGTTGAATATTGATGATACTAACATGTTTCCGACGCTCTAAGGTGAGAG
ATAGAGAGTGAAGGACGTGGGAATGGCGTGTCTGTGTATTTGTCTGTGTC
TGTATCCATGCTGTGTATATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTAGGGGAGAGTTGGGGTTAATTTCA
GAAGTGTTTGCAGAAAACACGAGAGCTATAACGACAAACGATTACGACGG
TCTGCAAGAGAAAAGGACAGAAGGGAAGGAGAAGTAAGTCTACTTTTAAG
GATTAGAGAAATTAAAAAGGCAGGCAAGTAAGGTGACCCAACACAACAAA
GGGTAACTACGGGGGAAAGGGCCAAAGTGCCACTGCATTCACTATTTTAA
GAAAGCTCCACTGAGCGAGGATGAGCAGGGGGCTGGGCGCTCAACACATA
AATGAGGGAAGGAGGATAATGCGGAACGCCTGGTCTGTCGAGCGATGAGG
ATTGGTAGTTTTTCATGAGGCCCTTCGATAGACAGAGTAAGCAAGACCGA
CACGGACTTAAAACAGGATTAAACGACGCGAGGAGATGCAAGGAAATGAG
AAAGCAAGCAAGCAACGACAACAAGAGAGACGAGACGCGGTTGTTCGGAA
ACCCAAGATAAGACAAGAAGAGAGAAGAGAAGAGAACAGATGTCTAGAAA
TCTTGAGACTCCGAGTCATTGAAAGAATGAACGACGAATGCTTCTACGAA
GA back to topCoding sequence (CDS) from alignment at chr5:963328..965879- >NO05G03670.1 ID=NO05G03670.1|Name=NO05G03670.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr5:963328..965879- (Nannochloropsis oceanica)
ATGTCCAACCGCTTCGCGCTCCTCGCTGACGATGATGACGATGGAGGCCC
CCCTCAAAAGCCTGTCGCGGTTGCCATCTCGGCCTCTAAGAAAATCGAGG
ACACTGTCGCTCGTAGTGGTGCCAAGGGTGGGCAACGTGGTGGTCGTGTG
CATGCGAACGGCAAGGTGGAGCCCCGTGAGCCTAAGGCACATGCGCGTGA
TGAGCACCGCCAGCGTGATCGACAGGATGGGACGGGGCGGGGGGCGAAGA
AACAGCACCGTAATGGCAGCGGGAAGTATAATTGGGGGGAGGATGGAGAG
AATGATGGGGTTGTCGAAGCCATTGATCCCGTGGGAGGCGACGAGGAGGA
GGAGTTGGCGCCTGTCGAAGGCGTGGAGGGGGAAGGAGAGGAGGTAGAGG
GGAGGGGGATGAAGAAGACGAGGGAGGAGAGGGAGAAGGCCCCTGAGCCC
GAGCCTGAGCCTGAGATCCCTACGAAGAGCTACTTGGAGTACCAGGCGGA
GCTTGTGGAGCAAAAGAAGAGGAATGTCGAGCTGTTCGGGGAGGTGAAGG
AGCGAGAGGTTGATACTTCCGAATTTGACAAGCTGGTGTTGGTGGAAAAG
GAGGCGGAGAAAATTTTGGGGGGGGAGGCAGGGGCGAAGAAGAAAGCGGC
TTCGGCACAGAGAGCGACAAGTCGTCAAATTTTGAATGCGAGTTTTCGAT
CTGGAGGGGTTGATACGGGCCGTGGAGAGAGGGGAGGGAAGGGAGGAAGG
GGGGAGGGGGGGAGGGGGGGAGGACGAGGAGGAGATAGGGGGGGTGGGCG
GGGAATCAGGAGGGAGGGAGAGAGGGAGGGGTCAGGTGGACGTGGTCGGG
GGGAGGGGGGACGAGGGCGAGGAGGAAGGGAGGGTTACCGCGGTGGGCGA
GGTGGGCGTGGTGGTGGAGGGGGGAGGTTGAATATTGATGATACTAACAT
GTTTCCGACGCTCTAA back to top
|