NO05G03620, NO05G03620 (gene) Nannochloropsis oceanica

Overview
NameNO05G03620
Unique NameNO05G03620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr5:955687..956343 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:955687..956343 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G03620 vs. NCBI_GenBank
Match: EWM28033.1 (hypothetical protein Naga_100008g3 [Nannochloropsis gaditana])

HSP 1 Score: 127.9 bits (320), Expect = 3.900e-26
Identity = 84/168 (50.00%), Postives = 105/168 (62.50%), Query Frame = 0 
Query:   54 SPRLEGNPLLSEGVRLLLWSLCFNSVTALLVLGLVETIVVPVLLATLELTPSPRMSKLLTAVLTAVLFQGGWHGSIVLLLAVGGAAVGLVMAQWDDGFVPMFIFMYVGLWTFLRAGSSGGDVGGLLGS---LGRGPPLSTASGAVKGISDIDSTRGEGPLRWRGLWGA 219
            SPRLEG   LSEG ++LLWS+  N + AL+VL LVE ++ PVL+A LELTPSPR SK+LTA+LT VL QGG  GSI+LL+A+G +AV + M+Q D  FVP F+ + V L   LR G       G + S    G   PLS ASG +K  S +      G    R LWGA
Sbjct:   58 SPRLEGRSYLSEGFQMLLWSVVLNGLLALVVLWLVEGLLQPVLIAILELTPSPRTSKVLTALLTVVLLQGGGQGSIILLMALGISAVVVGMSQSDGVFVPCFLVLLVCLGAVLREGGWNAYKNGSVASRNTWGDASPLSAASGVLKAFSGMGGAPEGGR---RNLWGA 222
The following BLAST results are available for this feature:
BLAST of NO05G03620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28033.13.900e-2650.00hypothetical protein Naga_100008g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003497NSK003497Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03620.1NO05G03620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100008g3gene2524Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03620.1NO05G03620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03620 ID=NO05G03620|Name=NO05G03620|organism=Nannochloropsis oceanica|type=gene|length=657bp
ATGGACGAAGGAGACAGCCTGACTGTAGGGAACACTAGTTCCACCGCGAC
AACCGTCAGCTCCAGCCTGAGCACTAGCGGCAGCCTGAACAACAACAACG
CCCGCCGCCGGCCCCAATACTTTTTCCGGACCGCCGACTCTTCCACTGCC
AATGAGTCCAGCCCCCGTTTGGAAGGGAATCCCCTACTCAGTGAAGGGGT
TAGACTGCTCCTGTGGTCCTTGTGCTTTAACAGCGTGACGGCCTTGCTGG
TGCTAGGACTGGTGGAGACCATTGTCGTCCCTGTCCTCCTGGCCACTCTC
GAGCTCACACCCTCGCCGCGCATGAGCAAACTGTTGACTGCGGTTCTTAC
CGCAGTTCTTTTCCAAGGTGGATGGCACGGATCCATCGTTTTGCTCCTTG
CTGTGGGGGGCGCAGCGGTGGGTCTGGTGATGGCACAGTGGGATGATGGG
TTTGTGCCTATGTTCATCTTTATGTACGTGGGCTTATGGACCTTTCTGCG
GGCAGGTTCCAGTGGTGGGGATGTTGGAGGCTTATTGGGAAGTTTAGGAC
GCGGACCGCCATTAAGCACGGCATCGGGTGCGGTGAAAGGGATTTCGGAT
ATTGACAGCACTCGTGGGGAGGGACCGTTGCGGTGGAGAGGACTGTGGGG
GGCGTAA
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protein sequence of NO05G03620.1

>NO05G03620.1-protein ID=NO05G03620.1-protein|Name=NO05G03620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MDEGDSLTVGNTSSTATTVSSSLSTSGSLNNNNARRRPQYFFRTADSSTA
NESSPRLEGNPLLSEGVRLLLWSLCFNSVTALLVLGLVETIVVPVLLATL
ELTPSPRMSKLLTAVLTAVLFQGGWHGSIVLLLAVGGAAVGLVMAQWDDG
FVPMFIFMYVGLWTFLRAGSSGGDVGGLLGSLGRGPPLSTASGAVKGISD
IDSTRGEGPLRWRGLWGA*
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Synonyms
Publications