NO05G03620.1, NO05G03620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03620.1
Unique NameNO05G03620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr5:955687..956343 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:955687..956343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03620.1 vs.
Match: EWM28033.1 (hypothetical protein Naga_100008g3 [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 7.900e-35
Identity = 113/225 (50.22%), Postives = 142/225 (63.11%), Query Frame = 0 
Query:    1 MDEGDSLTVGNTSSTATTVSSS--LST-SGSLNNNNA-RRRPQYFFRTADSSTANESSPRLEGNPLLSEGVRLLLWSLCFNSVTALLVLGLVETIVVPVLLATLELTPSPRMSKLLTAVLTAVLFQGGWHGSIVLLLAVGGAAVGLVMAQWDDGFVPMFIFMYVGLWTFLRAGSSGGDVGGLLGS---LGRGPPLSTASGAVKGISDIDSTRGEGPLRWRGLWGA 219
            MD   SL+  N+++T TT ++S  LST SGS + N A RRRP YFFRTADS   +  SPRLEG   LSEG ++LLWS+  N + AL+VL LVE ++ PVL+A LELTPSPR SK+LTA+LT VL QGG  GSI+LL+A+G +AV + M+Q D  FVP F+ + V L   LR G       G + S    G   PLS ASG +K  S +      G    R LWGA
Sbjct:    1 MDSRVSLSADNSTATTTTATTSTTLSTVSGSADTNAAQRRRPTYFFRTADSLPDDGFSPRLEGRSYLSEGFQMLLWSVVLNGLLALVVLWLVEGLLQPVLIAILELTPSPRTSKVLTALLTVVLLQGGGQGSIILLMALGISAVVVGMSQSDGVFVPCFLVLLVCLGAVLREGGWNAYKNGSVASRNTWGDASPLSAASGVLKAFSGMGGAPEGGR---RNLWGA 222
The following BLAST results are available for this feature:
BLAST of NO05G03620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28033.17.900e-3550.22hypothetical protein Naga_100008g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03620NO05G03620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03620.1NO05G03620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03620.1.cds1NO05G03620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03620.1 ID=NO05G03620.1|Name=NO05G03620.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGGACGAAGGAGACAGCCTGACTGTAGGGAACACTAGTTCCACCGCGAC
AACCGTCAGCTCCAGCCTGAGCACTAGCGGCAGCCTGAACAACAACAACG
CCCGCCGCCGGCCCCAATACTTTTTCCGGACCGCCGACTCTTCCACTGCC
AATGAGTCCAGCCCCCGTTTGGAAGGGAATCCCCTACTCAGTGAAGGGGT
TAGACTGCTCCTGTGGTCCTTGTGCTTTAACAGCGTGACGGCCTTGCTGG
TGCTAGGACTGGTGGAGACCATTGTCGTCCCTGTCCTCCTGGCCACTCTC
GAGCTCACACCCTCGCCGCGCATGAGCAAACTGTTGACTGCGGTTCTTAC
CGCAGTTCTTTTCCAAGGTGGATGGCACGGATCCATCGTTTTGCTCCTTG
CTGTGGGGGGCGCAGCGGTGGGTCTGGTGATGGCACAGTGGGATGATGGG
TTTGTGCCTATGTTCATCTTTATGTACGTGGGCTTATGGACCTTTCTGCG
GGCAGGTTCCAGTGGTGGGGATGTTGGAGGCTTATTGGGAAGTTTAGGAC
GCGGACCGCCATTAAGCACGGCATCGGGTGCGGTGAAAGGGATTTCGGAT
ATTGACAGCACTCGTGGGGAGGGACCGTTGCGGTGGAGAGGACTGTGGGG
GGCGTAA
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protein sequence of NO05G03620.1

>NO05G03620.1-protein ID=NO05G03620.1-protein|Name=NO05G03620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MDEGDSLTVGNTSSTATTVSSSLSTSGSLNNNNARRRPQYFFRTADSSTA
NESSPRLEGNPLLSEGVRLLLWSLCFNSVTALLVLGLVETIVVPVLLATL
ELTPSPRMSKLLTAVLTAVLFQGGWHGSIVLLLAVGGAAVGLVMAQWDDG
FVPMFIFMYVGLWTFLRAGSSGGDVGGLLGSLGRGPPLSTASGAVKGISD
IDSTRGEGPLRWRGLWGA*
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mRNA from alignment at chr5:955687..956343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03620.1 ID=NO05G03620.1|Name=NO05G03620.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at chr5:955687..956343- (Nannochloropsis oceanica)
ATGGACGAAGGAGACAGCCTGACTGTAGGGAACACTAGTTCCACCGCGAC
AACCGTCAGCTCCAGCCTGAGCACTAGCGGCAGCCTGAACAACAACAACG
CCCGCCGCCGGCCCCAATACTTTTTCCGGACCGCCGACTCTTCCACTGCC
AATGAGTCCAGCCCCCGTTTGGAAGGGAATCCCCTACTCAGTGAAGGGGT
TAGACTGCTCCTGTGGTCCTTGTGCTTTAACAGCGTGACGGCCTTGCTGG
TGCTAGGACTGGTGGAGACCATTGTCGTCCCTGTCCTCCTGGCCACTCTC
GAGCTCACACCCTCGCCGCGCATGAGCAAACTGTTGACTGCGGTTCTTAC
CGCAGTTCTTTTCCAAGGTGGATGGCACGGATCCATCGTTTTGCTCCTTG
CTGTGGGGGGCGCAGCGGTGGGTCTGGTGATGGCACAGTGGGATGATGGG
TTTGTGCCTATGTTCATCTTTATGTACGTGGGCTTATGGACCTTTCTGCG
GGCAGGTTCCAGTGGTGGGGATGTTGGAGGCTTATTGGGAAGTTTAGGAC
GCGGACCGCCATTAAGCACGGCATCGGGTGCGGTGAAAGGGATTTCGGAT
ATTGACAGCACTCGTGGGGAGGGACCGTTGCGGTGGAGAGGACTGTGGGG
GGCGTAA
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Coding sequence (CDS) from alignment at chr5:955687..956343-

>NO05G03620.1 ID=NO05G03620.1|Name=NO05G03620.1|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at chr5:955687..956343- (Nannochloropsis oceanica)
ATGGACGAAGGAGACAGCCTGACTGTAGGGAACACTAGTTCCACCGCGAC
AACCGTCAGCTCCAGCCTGAGCACTAGCGGCAGCCTGAACAACAACAACG
CCCGCCGCCGGCCCCAATACTTTTTCCGGACCGCCGACTCTTCCACTGCC
AATGAGTCCAGCCCCCGTTTGGAAGGGAATCCCCTACTCAGTGAAGGGGT
TAGACTGCTCCTGTGGTCCTTGTGCTTTAACAGCGTGACGGCCTTGCTGG
TGCTAGGACTGGTGGAGACCATTGTCGTCCCTGTCCTCCTGGCCACTCTC
GAGCTCACACCCTCGCCGCGCATGAGCAAACTGTTGACTGCGGTTCTTAC
CGCAGTTCTTTTCCAAGGTGGATGGCACGGATCCATCGTTTTGCTCCTTG
CTGTGGGGGGCGCAGCGGTGGGTCTGGTGATGGCACAGTGGGATGATGGG
TTTGTGCCTATGTTCATCTTTATGTACGTGGGCTTATGGACCTTTCTGCG
GGCAGGTTCCAGTGGTGGGGATGTTGGAGGCTTATTGGGAAGTTTAGGAC
GCGGACCGCCATTAAGCACGGCATCGGGTGCGGTGAAAGGGATTTCGGAT
ATTGACAGCACTCGTGGGGAGGGACCGTTGCGGTGGAGAGGACTGTGGGG
GGCGTAA
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Synonyms
Publications