|
|
Properties
| Property Name | Value |
|---|
| Description | Rna-binding protein 26 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:948342..952458 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR035979 | RBD_domain_sf |
Homology
BLAST of NO05G03600 vs. NCBI_GenBank
Match: EWM28014.1 (rna-binding protein 26 [Nannochloropsis gaditana]) HSP 1 Score: 119.8 bits (299), Expect = 6.300e-23 Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0
Query: 1 MSLPQGEDRKKLQAWLQRQLRPLSETSPVILSKFVLQLLEAADKGEAEKKAECLRELDLYLTHATAKFVDRLFHALETGSY 82
M +P GE+RKKL AWLQ+QLRPLSETSP ILSKFVLQLL+AADK EAE +AECLREL LYL +T FVD LF AL TGSY
Sbjct: 1 MIVPLGEERKKLHAWLQQQLRPLSETSPAILSKFVLQLLDAADKEEAEVRAECLRELGLYLGQSTVPFVDHLFQALRTGSY 81
BLAST of NO05G03600 vs. NCBI_GenBank
Match: EWM28044.1 (RNA binding protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 96.3 bits (238), Expect = 7.400e-16 Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0
Query: 1135 RIDNRTTCLKLVNKPQGVAPGSLQSYFNNFGTVEHVKVLVEGKGGGEXXXXSAVVKFVTRRAAENAKANAKYLGSHALVLQWHD 1219
RID+RTT LKL +P G+A SL+ +F+NFGTVE V++ GG+ AVVKF TR AAENAKA AKY+G H LVL+WHD
Sbjct: 210 RIDHRTTHLKLCTRPPGLAAASLRRFFSNFGTVEAVEM-----AGGQEESGPAVVKFATRWAAENAKAKAKYVGKHPLVLEWHD 288
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03600 ID=NO05G03600|Name=NO05G03600|organism=Nannochloropsis oceanica|type=gene|length=4117bp
AACAGGTTCAATACCTCCGGATGCAGTACTTCCAATTAAAATAGAAGTAG
AAGAAAGCCGAACTAATGAGCCTGCCCCAAGGGGAAGACCGGAAGAAGCT
GCAAGCCTGGCTGCAACGGCAACTCCGACCCCTGAGCGAGACAAGCCCCG
TCATACTCAGCAAATTCGTATTGCAACTTTTAGAGGCTGCAGACAAGGGG
GAAGCGGAAAAAAAGGCCGAGTGTTTGCGGGAGCTTGACTTGTATTTGAC
GCATGCCACGGCCAAGTTTGTGGATCGTCTGTTCCATGCCCTCGAGACGG
GGAGTTATCTGCACGAACAGCAGCAGCAGCAGCAGGAGCAGTTACTCTAT
GATGGTGGTCTACAAGAAGATGGCGAGCGCCAGTACAATCGACAGGGGGG
AACTAACGACGACGTCAGCCAGGGAAGCGGGAGAGGGAGTCGGGGGCTAG
GAGGGTACGAGGACGAGGAGGAGGAGGAAGAAAGAGGCCGAAATGGTCAA
TATGGCGAAGAGAAATATGAGGGTGATGGGTATCAGCAAGCGCACGGATC
TGGCGTGGAGTCGGTAGCTTTCGCGGAAGATCCTTATGCGCATTATGATC
GAGAGGGGGATGAGGGAGGGATGGAAGGAGGTGGTGGTAGAGGACGGAGG
CGTGGAGGGAGCGATGCCTCAGCGTCTTCGGAGGATGACGACGAGGATGA
GGACGAGAGTGAAGGGCGGAGGGGTGGTCGTGGTGCCCGGAGAAGGCGAC
TGGAGCAACGGAGCAGGAGCAGGAGTCCTGGTCAAAGAAATCCACCACCG
CAGACTTATCCACCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCCGCGACAGCAGCCGTACCAGCAACAGAGACTACCGCAACAACAGCAGC
AACAGCAGCAACAGCAGTCACCCCACAGTGAGAGTCATTGTCGGGATTGG
GATGGCGGACGGAATGTACGCTTTCCTTCACGGCAGCAGCCGCCGCAGCA
GCACCAATACCCTCAGCAGGGACCATGGCAAGGAGTGCAAGGCGGCGGTC
CTCTTGGTGGTCCTATAGGAGGAGGAAGAGGAATGATTGTGGGCGGGCCC
AAAACACCACCACCACGAGGGTGGGATGGAGGAGGAGGAGTAAGGCGGGG
TCCACCACCTCCTCCTCACCACATGCAGATGCAAGGCTCCCCTCCTCCCC
TCCCTCATTACAGCCAACCTCGCCCTCCTCCTCTACCTCGTCACCATCAT
CCTAACGGCATGGGCCGAGGTGGACCCCTCCTACCTCCCCACGCTCCCCC
GCACCCACCCTCCGTCTCCTCCTCCTCCACCTCCCGTCAACCCCCCATGA
ATGGTCATAATGGGAGAGATTATCCTCCCCCTCCCTCCCACCCTGCTCCT
CCTCCTCTTCCCTCTTCTATGCCACGTCGCCACGGCCCTTCTCCTGATTA
CGGTGGCCGAGGGGCTCCACCCCCTTCCCCCTCCTCTTCCGCCTTCGCGC
CCTTGCCTCCCCACCCTCCCCCCTACTACGACAATGGAAGCAGGGGGAGA
GGAAGGGAGGGGGTAATGGGTGGAAGGGGGGGAGCGAATCCATTTGGTAT
GGCAGGACGAGGAGGAGGAATGGGCGGAGGAAGAGATGGGGAGAGAGTTG
TTCCTCCTCCCCCTCGTCCTCCCCTCCCACCTGGCCCCCCTCCATCTCAC
AAGGGAACGAGTGGAGGGAGGGAGGGAGGAGGAGAAGGGTGGGATAGGAA
AAGGGATAGAAGCTGGGAACGGGAGACGGAAAGGGGTCTTGCACCACCCC
GAGGAGGAGGACGAGGAGGAGGAGGAGGAGGACGAGGGCCGCCATCCTTG
GGAGGACCGTACGACAGCCCCAACGGCGGCCCACTGCCACCACTCGCAGC
AAGGGGAGGGGGGATGAAGGGAGGAAGAGGAGGGCAAATGAACGCCATAC
GTCCGGGTATACAGGCCTCGCCCATGAACGGACCACCACCACAAGAATCG
CCACTCCACCACCCACTAGGCAGGGAGGGAGGGAGGGAAGGAGGAGGGGG
GCCAGATGGCCGCCGGACAATTTTTTTGCTGAATGTTCCCCCCTTCCTAA
CACCCTCCCTTGTGGGAGACCACTATTCTCGTTTCGGCCATATCGTCAAG
ATCGTTTTCGAGCCGTTGCTTGGGGGGCCCAATAAGGGGAAAAACAAGGT
GTATATTCAATATGCGTCGCACAGAGAGGCAGAAGCGGCGCAGGTGGCAG
TGGATGTACCGATGGGGAGGACGGGCTTCCGGCCTATCATGGGGTATCAC
CACTCGAATCTGGTGGAGGCAGGGAGGCAACAGCAGGAGAGGTGGGTGGA
CAGGATGGGCAGCAGTGGAGGCGGTGAAGGAGGAGGGAGGGGAGGTGGAA
TAGAGGGGGCGAGGGGGATGCGGGTAGTGGATAAGCTGGGGGGGATTGCG
GGTGAGGTTGGTGGAGGAGGAGGGGCTGGAGGGGACCGAGGACCACCGTT
TCCTCCTTTCCCCTCTTCCAGACCTTACACACAGGATCGAGGAGGAGGAG
AAGGAGGAGGAGGAGGAAAAGGAGGAGGGTACCCTCCTCCTCCCCGCGGG
CCGCCGCCGCCTTCTTCTTTCGCTGGAGGGGTTCCACAAATCAAGCGACC
GCGTTATGATGCCCTCTCTCACCACCACCACCACCACCACCAGCAGCAGC
AGCAGCAGCGACTCCCCACACAAGCACAGCTGCAGCAGCAGCCGCGCCCA
CCTCCGACGGGCCACCCGCAGCAGCCGCCACACCCGCAGCAGCCGCAGAG
TCGGTCTCCGTTTCTTCGTCCTCCTCCCAGGGGTGCACCCATCCCATTTG
ATTCGCGGCCTCCTGCACAGCCACCCCGCCCCAAGCAGCCTCCTAGAGAA
CAAGCACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCCTCCTC
CTCTTCCTCCCCGTCGTCTAACCCTCCTCCTTCCCCTTCCATCGCTCTTT
CCACATCCTCAACCACCGCAACATCCTCCTCCCTCCCTTCCTCATCGACC
CACCCCTCCTCCGCCGCCCTCACTCGTCAACGCCTTGAGCTGGCCAAGAA
AAAGGAAGCCATGTACAGCACGCAAAAGTCCCTCCACGAAAAACTGGTGG
CAGCTGCGGTTGCTACTGCTACTGCGGCAGCAGCAACAGCAAATCCTACT
GGTGTTACTACCGAAAACGCAGAGATGGAGAAGGCCAAAAAGGAGCTGTT
GGACACGGAGGTGAAGTTGTTCGAGGCGAGAGAAGAGGTGCGGCGTTTGA
CGCAGGCGGTAGCACAATTGCATTTGGCAGGAGGAGGGGAAGGAAGAGCT
GGGGGAGGGAGGGGAGGAGCAGGGGTGAAAGTGACGACGCATGCCCCTGC
AGGAGGAGGGAGGGGTGGAGGGAGGATAGGTGGAAGAGGAGTGGGGGGAG
GGAGGGGGGGAGGGTTGCGGATTGACAACCGGACGACGTGCCTGAAGTTG
GTGAACAAACCGCAGGGTGTTGCTCCTGGTTCCCTGCAGAGCTATTTCAA
TAACTTCGGGACTGTGGAACATGTAAAGGTTCTGGTGGAGGGGAAGGGAG
GAGGGGAGGGAGGGGAGGAGTCGGCGGTCGTGAAATTTGTCACGAGAAGG
GCGGCCGAGAATGCGAAGGCGAATGCCAAGTACTTGGGCTCACATGCGTT
GGTGTTGCAATGGCATGATGCTTCAGCTGCTGCTGCTCCTCCTCCTTTAT
CAACGACAATGAACGAAGCGACGACGGCTGTTGGTGTTGCTGCTCCCGTT
GTTGAGGGAGAGGGGGGGGAAGGGGAGGTGGGAGAAGGAGCAGGGCAGGG
AGGAGAGGAGGGGGAAGAGGGGGGAGTAAGTCTCTTGGAGCAGGAGGAGG
ATTTGGATGCGCTTTTTTCTTAATAACGAGGAGAGGAAAGGAGGTCAAGA
AGAAAAATGCGCTTTCTTTAGAGAAAAGGGTGGTAAGGAGAAGGAAGCCC
TGGACTTGGAGCGAGTCCGGAGGGGGGGAGGGAGGGAAGGAGAGAGGGAA
GACGCGGACTGCGACAGATAATGCCCAAAGAATATAAATAGAAAGAGATG
ATAGGTGCAATGTTAAA back to topprotein sequence of NO05G03600.1 >NO05G03600.1-protein ID=NO05G03600.1-protein|Name=NO05G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1286bp
MSLPQGEDRKKLQAWLQRQLRPLSETSPVILSKFVLQLLEAADKGEAEKK
AECLRELDLYLTHATAKFVDRLFHALETGSYLHEQQQQQQEQLLYDGGLQ
EDGERQYNRQGGTNDDVSQGSGRGSRGLGGYEDEEEEEERGRNGQYGEEK
YEGDGYQQAHGSGVESVAFAEDPYAHYDREGDEGGMEGGGGRGRRRGGSD
ASASSEDDDEDEDESEGRRGGRGARRRRLEQRSRSRSPGQRNPPPQTYPP
PQQQQQQQQQQQPRQQPYQQQRLPQQQQQQQQQQSPHSESHCRDWDGGRN
VRFPSRQQPPQQHQYPQQGPWQGVQGGGPLGGPIGGGRGMIVGGPKTPPP
RGWDGGGGVRRGPPPPPHHMQMQGSPPPLPHYSQPRPPPLPRHHHPNGMG
RGGPLLPPHAPPHPPSVSSSSTSRQPPMNGHNGRDYPPPPSHPAPPPLPS
SMPRRHGPSPDYGGRGAPPPSPSSSAFAPLPPHPPPYYDNGSRGRGREGV
MGGRGGANPFGMAGRGGGMGGGRDGERVVPPPPRPPLPPGPPPSHKGTSG
GREGGGEGWDRKRDRSWERETERGLAPPRGGGRGGGGGGRGPPSLGGPYD
SPNGGPLPPLAARGGGMKGGRGGQMNAIRPGIQASPMNGPPPQESPLHHP
LGREGGREGGGGPDGRRTIFLLNVPPFLTPSLVGDHYSRFGHIVKIVFEP
LLGGPNKGKNKVYIQYASHREAEAAQVAVDVPMGRTGFRPIMGYHHSNLV
EAGRQQQERWVDRMGSSGGGEGGGRGGGIEGARGMRVVDKLGGIAGEVGG
GGGAGGDRGPPFPPFPSSRPYTQDRGGGEGGGGGKGGGYPPPPRGPPPPS
SFAGGVPQIKRPRYDALSHHHHHHHQQQQQQRLPTQAQLQQQPRPPPTGH
PQQPPHPQQPQSRSPFLRPPPRGAPIPFDSRPPAQPPRPKQPPREQAPQQ
QQQQQQQQQPSSSSSPSSNPPPSPSIALSTSSTTATSSSLPSSSTHPSSA
ALTRQRLELAKKKEAMYSTQKSLHEKLVAAAVATATAAAATANPTGVTTE
NAEMEKAKKELLDTEVKLFEAREEVRRLTQAVAQLHLAGGGEGRAGGGRG
GAGVKVTTHAPAGGGRGGGRIGGRGVGGGRGGGLRIDNRTTCLKLVNKPQ
GVAPGSLQSYFNNFGTVEHVKVLVEGKGGGEGGEESAVVKFVTRRAAENA
KANAKYLGSHALVLQWHDASAAAAPPPLSTTMNEATTAVGVAAPVVEGEG
GEGEVGEGAGQGGEEGEEGGVSLLEQEEDLDALFS* back to top
|