NO05G03550, NO05G03550 (gene) Nannochloropsis oceanica

Overview
NameNO05G03550
Unique NameNO05G03550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1982
Alignment locationchr5:928778..930759 +

Link to JBrowse

Properties
Property NameValue
DescriptionSun protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:928778..930759 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0003723RNA binding
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR035926NusB-like_sf
IPR001678MeTrfase_RsmB/NOP2
IPR006027NusB_RsmB_TIM44
IPR023267RCMT
Homology
BLAST of NO05G03550 vs. NCBI_GenBank
Match: WP_080502662.1 (hypothetical protein [Neochlamydia sp. EPS4])

HSP 1 Score: 198.0 bits (502), Expect = 8.100e-47
Identity = 164/561 (29.23%), Postives = 255/561 (45.45%), Query Frame = 0
Query:   13 NPREAAYLAALAADREQAFISDALSEWADAKEPSASEMGLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCALRRR 574
            N REAA+ A L + + ++FIS+ L EW   ++PS+ +  LA  IA  + + A +LDY    L++              +K +RLK +++ +LRTAL Q+ +  + P YAIVD +++ AK++     F A+ NA+LRK                                       L LP+G    +L++R S+P + +    + +G      I+EA N    TM R R                             V  PA            W+TV   P  + T         V  SE   +++     +Y+ N TPA L+  L+Q              G  +    +LD+CA+PGGK LA+ D   +       AL  NDV+ +K  ++++N +K+G++ ++  + G+ L L ++                    FD+++LD PCSN+GVL +RPEARWRL ++   ++L+  Q +LLKHA   L       GEIWYMTCSIL  E+E +V  AC+EL L       K   + +LP       +DGGF C L ++
Sbjct:   30 NSREAAFFALLHSLKGESFISEYLGEWFKKEQPSSQDYQLAHQIAYGSAQMALTLDYLALQLSE--------------KKKMRLKLKEKALLRTALYQFYFLDKLPHYAIVDESIKIAKKHFHS-YFVAYLNAILRKF----------------------------------SLLSLTLPQGMDLPSLSIRYSFPLYFIKNLSKYYGLQATTKILEASNKPALTMARLRNI---------------------------VEIPA-----------EWSTVIEEPVKVIT---------VPASE--VKRVASSADYYIQNVTPASLIGNLSQ--------------GISKAPTSILDICASPGGKTLALHDFFPQA------ALYANDVSLQKIQKLKDNFAKYGVQAQVSCSEGEKLELDKK--------------------FDLIVLDVPCSNSGVLSKRPEARWRLNEDQ-AKQLKIIQLNLLKHAVHLL----ENEGEIWYMTCSILPEENEEIVALACQELDLI------KKNFISILP---NAEGWDGGFACCLVKK 438          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: OJV11239.1 (hypothetical protein BGO14_09680 [Chlamydiales bacterium 38-26])

HSP 1 Score: 194.5 bits (493), Expect = 9.000e-46
Identity = 168/559 (30.05%), Postives = 253/559 (45.26%), Query Frame = 0
Query:   13 NPREAAYLAALAADREQAFISDALSEWADAKEPSASEMGLATLIANVACREANSLDY-AIGVLAKGGGDGAKEEKGKKREKSVRLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCAL 571
            N REAA+LA L + R + +ISD L +W   ++P A +  LA  IA  + + A +LD+ A+ V  K               K V LK +++ +LRTAL Q  +  R P YAIVD  ++ AK Y     F ++ NA+LRK                                  S    L LP+ +   +L++R S+P   V   +  +G+ K   I+ A N  P  M+                              A +  P   S       + W ++      +  PLP+     ++   ++F+ + +   +Y+ N TP  L+++L +                      +LD+CAAPGGK LAV D   E +      L  NDV+E+K  +++EN  K+ ++  +   +G  +                      E  FD++ILD PCSN+GVL +RPEARWRL +E   ++LE+TQ+ LL+ A   L     PRG+IWYMTCSIL  E+E MVE+ACRELG +   E  + L++  L G      +DGGF   L
Sbjct:    2 NSREAAFLALLHSLRGERYISDYLEDWFIQEKPHAQDYHLAQQIAYGSAQMALALDFLALQVSEK---------------KKVHLKLKEKALLRTALYQIYFLNRVPHYAIVDETIKVAKNY-FHKYFVSYLNAILRK----------------------------------SVDIELKLPQQNDASSLSIRYSFPTSYVSELLHHYGEEKTLEILRASN-HPAVMM------------------------------ARLRNPTESS-------IDWISI------IKHPLPVV----IIPPIEMFK-IVKSSDFYIQNVTPVQLISQLCEKLTI--------------PPQSILDMCAAPGGKSLAVHDFFPEAE------LFANDVSEDKLMKLKENFQKYEIQAHVLCNLGQDIAF--------------------EEKFDLIILDVPCSNSGVLNKRPEARWRLNEEN-SQQLEKTQWGLLEKAKTLL----KPRGQIWYMTCSILPQENERMVEKACRELGFK---ELHRQLILPNLEG------WDGGFASCL 407          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: WP_079978104.1 (hypothetical protein [Parachlamydiaceae bacterium HS-T3])

HSP 1 Score: 175.3 bits (443), Expect = 5.600e-40
Identity = 163/565 (28.85%), Postives = 237/565 (41.95%), Query Frame = 0
Query:    6 ISPTQAKNPREAAYLAALAADREQAFISDALSEWADAKEPSASEMGLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCAL 571
            +S  +  NPREAA+LA  +A++++AFI D L++W     P   +  LA  IA    R   +LD+ +  L                 K + LK +  ++LR+A+ Q     R PLYA+V+ AVE AK+Y   P    F NALLRK                                   +T  L  P+G + + L++R SYP  L+   +++F  A+ + ++ AGN  PP M R R+A     +L  + SD   E++ S+S                                                           +Y+ N TPA L   LA       F              RVLDLC++PGGK +   D   +        L  NDV+E K  RI+ENL+K+ +   +     +   LT +                    FD++I D PCSN GV+ +RPEARWR   E  L EL+     +L  A E L    + RG++W MTCSIL+ E++ +V  AC+E  L+   +        +LP E QG   DGGF   L
Sbjct:   33 VSSQKLSNPREAAFLALYSAEKQEAFIEDWLNQWHQKNHPKEVDWRLAQEIAFGTMRMKLTLDHFLLQL--------------NAYKKISLKLKPLLILRSAIYQLTMLDRVPLYAVVNEAVELAKKYCSSP-IARFINALLRK----------------------------------HETILLKRPEGITAKGLSIRFSYPEELIQHLLKQFTLAETQQVLAAGNLPPPLMARKRSAKNLEMIL-FSSSDI--EKYASSSE----------------------------------------------------------YYIQNSTPALLFHHLAN---QESFNPH-----------RVLDLCSSPGGKLILAHDYFPQA------TLFANDVSEIKLERIKENLAKYQIPAYLSHGPAEQYPLTTK--------------------FDLIIADIPCSNTGVMNKRPEARWRF-SETSLSELKMLAHRILARAVELL----NERGKLWLMTCSILREENQVLVSSACKEFSLQCTHQ------ELILPDE-QGR--DGGFAAEL 433          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: PIS01742.1 (hypothetical protein COT84_00880 [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9])

HSP 1 Score: 146.7 bits (369), Expect = 2.100e-31
Identity = 147/558 (26.34%), Postives = 229/558 (41.04%), Query Frame = 0
Query:   15 REAAYLAALAADREQAFISDALSEWADAKEPSASEMGLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCALRR 573
            R  A+ A L  +++   + + L EW     P   E  LA  +A  + R   +LD+    LA                   +LK R++++LR A+ Q+ +  + PLYA+V+  V+ AK+         F NA LRKL                                  +T     P   SE+ L  + SYP  L+ LF++E+G      +++  N     M+R R        + L+  + R    +                        W                   L ++  E++  +L     +Y+ N TP  L+  L+                  +G  R+LDLCAAPGGK L   D+  E Q      L  ND++E +  ++ EN+SK+ LE  +                    SN   E       FD++I+DAPCSN GVL +R EAR+ +  +  L+ L + Q+ ++K+A   L    +  G+IW+MTCSIL  E+E  +E+  +   L+V    GK    KVLP +     +DGGFGC L+R
Sbjct:   19 RYGAFYALLEYEKKGRKVENTLREWLKQASPKKEEYNLAQELAYGSIRRKITLDFYAFQLAS------------------KLKLREKLLLRLAIYQFLFAKKIPLYALVNETVDLAKK-NISLETSKFFNATLRKL----------------------------------ETAKFKEP---SEKDLEKKYSYPKVLIDLFVKEYGLVDTIELLKVMNEPAKVMVRKR---GIVQDITLSKEEARVIHQKK-----------------------W-----------------QVLEIINKERI-SELVDSPEYYIQNVTPVFLMENLSLKV---------------KGPQRILDLCAAPGGKLLMAADLYPEAQ------LFANDISEGRLKKLEENISKYHLEAVV--------------------SNQPAEKMHNNKKFDLIIVDAPCSNTGVLHKRCEARYVITKDH-LKGLAKLQYEIMKNAFNLL----ADEGKIWFMTCSILSSENESFIEKILQNFPLQV---DGK--FHKVLPTK---EGWDGGFGCVLKR 422          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: XP_005537967.1 (similar to RNA methyltransferase [Cyanidioschyzon merolae strain 10D] >BAM81931.1 similar to RNA methyltransferase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 146.0 bits (367), Expect = 3.700e-31
Identity = 168/569 (29.53%), Postives = 242/569 (42.53%), Query Frame = 0
Query:   31 FISDALSEWADAKEPSASEMGLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPP-FLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMS--GASKSLKLPWTTVN------NLPPALHTPLPLPYTLGV--------VRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGL-RVLDLCAAPGGKGLAVWDVIREGQ-GHHTLALVMNDVNEEKTGRIRENLSKF-GL-EDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDE---ALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKD--LMMKVLPGEGQGGAFDGGFGCALRRR 574
            ++   L+ W++  +PS  E  LA +IA  A R+    DY +            +E  + + + + L   QR +L TALAQY +  R P+Y IV   VE AK Y  G  F AF NA+LR L           A   + +R   Y+V           RPLP P     +AL VR SYP  F   +F +   + +    +EAGN  P T LR     A               +HE    A       P S   +++++  PW             P    PL LP   G         V +  LF++L Q   +   N T A     L +    R           +E  + RVLDLC APGGK  AV++ ++    G      +  D+++++   + EN+ K  G+ E ++ + +  G +      G  + S  E         FD+VI D PC+N+GVL RRPEARWRL ++   + +  L   Q SLL  A   LLS    R  ++YMTCS+L  E   +V           V+E  +D  L+   L      G  DGG+   L RR
Sbjct:  120 YLLTQLALWSEKHKPSRVEYALAKIIAFNAVRQRALFDYVLQTNIVRDRSAIDQEPHRIKSEGMHLSIAQRALLHTALAQYAFMERVPVYTIVFSTVEIAKTY-FGQRFAAFANAILRNL----VRYGEKYAADLESRRPASYIV-----------RPLPFP----ADALDVRYSYPAVFASRVFGQLLNRKRLVAFLEAGNMTPQTFLRVPRQHA---------------QHEDLKMAIERRLLVPWSDQDSTETVSRPWIIYRVDLQCAGEDPGAALPLTLPSANGTGWADDPANVLTRSLFQRLLQH--FIAQNVTQAEHTFLLCEQLRQR---------WDKERRIARVLDLCTAPGGKLTAVFEYLQYSDLGDAQTEYIGIDLSDQRIHMVHENVDKTPGMRESRVFVGVARGESFVDCRAGNILRSEDE---RAVSPCFDLVIADVPCTNSGVLNRRPEARWRLDEQHFASSVPRLVSLQASLLNRAC--LLS----RSAVFYMTCSVLHAEGRDLVRS---------VLENHRDFELVWDHLTYTDAAGR-DGGYAAMLWRR 623          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: WP_088222889.1 (methyltransferase domain-containing protein [Chlamydiales bacterium SCGC AB-751-O23] >SCA58787.1 Uncharacterized protein AB751O23_AO_00180 [Chlamydiales bacterium SCGC AB-751-O23])

HSP 1 Score: 117.9 bits (294), Expect = 1.100e-22
Identity = 76/208 (36.54%), Postives = 109/208 (52.40%), Query Frame = 0
Query:  365 VLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCALRR 573
            +LDLCAAPGGK   + D+      + ++ L MND+++ KT  I+ENL +  L+  +  +      L                 GK+   FD+V+LD PCSN GVL +RPEARWRL D   L +L++ Q  +L+HAS+ +     P G + +MTCS+L  E+E  V    +E          K L  K L    QG  FDGGFG  +++
Sbjct:  256 LLDLCAAPGGKSFLIKDL------YESIDLYMNDLDDHKTSIIKENLERLKLDAVLSQSPAQHFPL-----------------GKQ---FDLVLLDVPCSNTGVLHKRPEARWRLEDPQNLLDLKKQQKQILQHASQLV----KPEGHLIFMTCSLLPSENEQQVRGFLKE------HPNYKLLKQKTLLPSSQG--FDGGFGALMKK 425          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: OHB63715.1 (hypothetical protein A2Y76_04270 [Planctomycetes bacterium RBG_13_60_9])

HSP 1 Score: 117.1 bits (292), Expect = 1.800e-22
Identity = 126/471 (26.75%), Postives = 196/471 (41.61%), Query Frame = 0
Query:  103 VLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCALRRR 574
            +LR A+ +  Y   TP+Y+IV+ AV    Q GG    G F NA+LR++    T  + D A  + ++     LV + + G   DT  LP P+      L+   S P +L   ++++FG  +A+ I  A N  P   +R         V PL    T +E  E    A   A P P  G           +    P   T LP     G        + L+      V N  P                            G  +LDLC+APG K   + +V R+     + ++   D++ ++  R+REN+++ GL+          +T+       Q  + +          FD ++LDAPCSN GVL RR EAR+R+R +A ++E+  TQ +LL  A+        P G I Y TCSI + E++ + E        E+  E       +++    +    DG +   L RR
Sbjct:   80 ILRIAVYELAYSPATPVYSIVNEAVNNVGQAGGKKQTG-FANAVLRQVVRHITDRQTDPATANPRRT----LVQTPQTGCQFDTDFLPDPETSLPAYLSTCFSLPLWLTGDWLDQFGSRQARAICLACNRRPSLYVR---------VNPL--RTTAQELLERFEQAGVHAEPVPSDG----------MIRIAGPHAVTQLP-----GFAEGLFTVQDLSASTAVRVLNPQP----------------------------GWLILDLCSAPGTKTTQLAEVTRD-----SASITATDIDPQRLERVRENITRLGLK---------SVTIIPHAQLEQGNTKL----------FDAILLDAPCSNTGVLARRVEARFRVRRKA-VQEIAATQKALLAKAA----GLVKPGGRICYSTCSIQRQENQAVAEFLAESSRFELARE-------ELILPSAEAFDHDGAYVALLTRR 455          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: WP_011195479.1 (16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB [Symbiobacterium thermophilum] >BAD40334.1 conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863])

HSP 1 Score: 111.7 bits (278), Expect = 7.700e-21
Identity = 142/521 (27.26%), Postives = 200/521 (38.39%), Query Frame = 0
Query:   15 REAAYLAALAADREQAFISDALSEWADAKEPSASEMGLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDD-----AGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVE 531
            REAA  A    D + A+ + AL       +    E  LAT +A    R   +LD+AIG +A            +  EK   +    R +LR A  Q  Y  R P  A VD AVE A+QY G      F N +LR L       R  G                          P P        ALAV+ SYP +LV  ++E FG+ +A  ++EAGN  PP  +R     A           TREE    A+AA    G                      P  H+P                      +G  + + T A  L RL       +   D+     A     + G  V+D+ AAPGGK   + +++ + +G     ++  D++  K   I EN  + G       TI + + L    +G  M               D V+ D PCS  G L RRP+ARWR   E  +  L   Q ++L+ A++ L     P G + Y TC+I   E+E +VE
Sbjct:   13 REAALRALYDVDIKAAYANLALDHHLSRSQLDGRERALATELAYGVTRRRATLDWAIGQVA-----------ARPLEK---MDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQY-GHEGVAKFVNGVLRNL-----IRRLPGL-------------------------PWPDEAADPVRALAVQHSYPEWLVAQWLERFGRGEAVRLLEAGNQVPPLTVRVNRLKA-----------TREE----AAAALAAEGV------------------RTEPTRHSP----------------------QGLIIQDLTSASSLERLEAMKQGLITVQDESSMLAAAVLNPQPGWMVIDVAAAPGGKATHLAELM-DNRGR----VIALDIHPHKVALIEENAERLG------TTIVEAVCLDARRVGEAMPERA-----------DAVLCDLPCSGLGTLARRPDARWRKSPED-VEALVPIQRAILESAAKAL----KPGGVLVYSTCTIQPKENEELVE 406          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: OHB79929.1 (hypothetical protein A2Z25_07800 [Planctomycetes bacterium RBG_16_55_9])

HSP 1 Score: 111.3 bits (277), Expect = 1.000e-20
Identity = 135/498 (27.11%), Postives = 204/498 (40.96%), Query Frame = 0
Query:   95 RLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTTDRNDGARQH--QQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRA----ADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASK--SLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQ-DEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMV----------ERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCALRRR 574
            R++G    ++R A  +  YC  T +YA+V+ AVE AK   G    G F NA+LR++       R+ G RQ    +   ++ L+  A  G   DT  LP  +      L+   S P +L+  +++EFG+     I  A N  P   +R  A      A    L  AG +             P+  PA  +G  K   +KL    + ++   LH       ++  ++S +   QL    EG ++     A    RL                   +    +LDLCAAPG K       + E  G     +V  D+N  +  R++EN+++ G++            +  EEL     S +  +       FD V+LD PCSN GVL RR EAR+R+  E  +  L + Q  LL  A+  +       G+I Y TCSI K E+  +V          E  C EL               +LP   +    DGG+   LRR+
Sbjct:   72 RIQGGLLAIIRVAAYELIYCPATEIYAVVNEAVELAKAATGKKQAG-FVNAVLRQV------IRHIGNRQSPLSEVATRRTLMQVASSGCEFDTDFLPNREADPAGYLSTVFSLPQWLLADWLDEFGEESTGRICLASNRKPSITIRPNALRITITALVEKLRQAGIELE---------IIPIVTPA-KAGVQKCDDIKL----IESMDSCLHRNDSCHKSMIHIKSPRAISQLPGFAEGEFIVQDVTASRPVRLL----------------NPQPDWTILDLCAAPGVKTTQ----LAEATG-DLATIVATDINPRRLERVKENIARLGIKSV--------NVVPYEELSHSQFSILNSK-------FDCVVLDVPCSNTGVLARRIEARYRISPEG-IHALTKMQSDLLDDAAARV----KAHGKICYSTCSIQKAENGELVRDFLKRNPAFELECEEL---------------ILP-SAEPPDHDGGYTAILRRK 491          
BLAST of NO05G03550 vs. NCBI_GenBank
Match: CDZ79925.1 (Ribosomal RNA small subunit methyltransferase B [Candidatus Rubidus massiliensis])

HSP 1 Score: 110.2 bits (274), Expect = 2.200e-20
Identity = 101/386 (26.17%), Postives = 164/386 (42.49%), Query Frame = 0
Query:  187 RPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMMKVLPGEGQGGAFDGGFGCALRR 573
            R L + + +  E+L+   SYP FL+   ++ +G    K I+E  N     M R R ++A+                              M G  +        + +  P L           V+       Q++ +  +Y+ N T   LL+ L+                      ++LDLCAAPGGK L ++D     +      +   D +  +  ++++NL K+    +I         L  E+L          E  K    FD++++DAPCSN+GVL +RPEARWR+  E L +++   Q  L+K+A E+L    +  G IWY+TCSILK E+E +++   +   LE+  +        +LP       +DGGFG  L R
Sbjct:  133 RKLTIAESNDLESLSSYYSYPVFLIQELLKNYGLDTTKYILEWANNPSLYMARIRNSNAS------------------------------MDGGYR--------LTHTEPML-----------VIEDNTKITQISMNSDFYIQNVTSVELLSELSNHMPLL--------------PKKILDLCAAPGGKALWLYD-----KFFPQSEIYCYDASLTRLTKLKDNLKKYNASIQI---------LNLEDL----------ENSKH--FFDLIVIDAPCSNSGVLNKRPEARWRITKEHLDQQI-LLQTELIKNAMEKL----TENGAIWYITCSILKKENENLLQDIIKNSPLEITWQ------KTILPNR---EGWDGGFGALLTR 415          
The following BLAST results are available for this feature:
BLAST of NO05G03550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_080502662.18.100e-4729.23hypothetical protein [Neochlamydia sp. EPS4][more]
OJV11239.19.000e-4630.05hypothetical protein BGO14_09680 [Chlamydiales bac... [more]
WP_079978104.15.600e-4028.85hypothetical protein [Parachlamydiaceae bacterium ... [more]
PIS01742.12.100e-3126.34hypothetical protein COT84_00880 [Chlamydiae bacte... [more]
XP_005537967.13.700e-3129.53similar to RNA methyltransferase [Cyanidioschyzon ... [more]
WP_088222889.11.100e-2236.54methyltransferase domain-containing protein [Chlam... [more]
OHB63715.11.800e-2226.75hypothetical protein A2Y76_04270 [Planctomycetes b... [more]
WP_011195479.17.700e-2127.2616S rRNA (cytosine(967)-C(5))-methyltransferase Rs... [more]
OHB79929.11.000e-2027.11hypothetical protein A2Z25_07800 [Planctomycetes b... [more]
CDZ79925.12.200e-2026.17Ribosomal RNA small subunit methyltransferase B [C... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003508NSK003508Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03550.1NO05G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638287gene_3164Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g6gene2516Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03550.1NO05G03550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03550 ID=NO05G03550|Name=NO05G03550|organism=Nannochloropsis oceanica|type=gene|length=1982bp
CCCGACGGTTCCCCCCGAATGAAACCCCGCTTTATATCTCCCACTCAAGC
CAAAAATCCCCGCGAAGCAGCGTACCTAGCGGCGCTGGCCGCTGATCGTG
AGCAAGCCTTTATTTCCGATGCTCTGTCTGAATGGGCCGACGCCAAAGAG
CCCTCGGCTTCCGAAATGGGGCTTGCGACCCTAATTGCCAATGTCGCCTG
TCGAGAGGCCAACAGCTTGGACTATGCCATTGGTGTCCTGGCGAAAGGAG
GAGGGGACGGAGCAAAGGAGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTG
AGGTTGAAGGGAAGGCAGCGGGTGGTCTTGCGGACAGCGTTGGCGCAGTA
CAAgtgggtttaagggaagggaggaagggagggtaggagagggcaaggga
gcgatacggaaggaccatgtttcgatgtcgatccaagagaggatgcgtga
cctctatattgcgtagcaccgacgactctccctcccttcctctccctcca
caaaagGTACTGCACGCGAACCCCTCTATATGCCATTGTCGATCACGCTG
TCGAGTGTGCCAAGCAATACGGCGGCGGTCCCTCTTTCGGCGCCTTCACC
AATGCCCTTCTTCGCAAGCTTCCCCCTGATCCTACCACTGACCGCAACGA
TGGGGCGCGCCAGCACCAGCAACAGCGAGAACAACAATATCTAGTCTTTT
CTGCGGAAGAAGGTGATGGAAGCGACACCCGCCCATTGCCCCTGCCCAAG
GGGCACTCGGAAGAGGCTCTCGCGGTTCGTCTCTCCTACCCGCCCTTCCT
CGTCCACCTCTTTATAGAAGAATTCGGGAAGGCCAAAGCCAAACTAATCA
TGGAGGCGGGCAATACATTTCCACCTACCATGCTTCGTTCCCGTGCTGCT
GATGCTGCGGCCCCAGTCCTGCCACTTGCTGGTTCCGATACAAGAGAGGA
GGAGCACGAAAGTGCTTCCGCCGCTGCTCCTGTAGCAGGGCCAGCGCCAA
TGAGTGGTGCTTCAAAATCACTCAAACTTCCCTGGACAACAGTAAATAAT
CTCCCTCCTGCCTTGCATACCCCGCTCCCACTCCCTTACACTCTTGGTGT
CGTCCGTTCGGAGAAATTGTTTCGGCAGCTGACGCAGGACGAAGGATGGT
ATGTCACCAACGGGACACCTGCTGGATTGCTGGCGCGGTTGGCGCAAGGC
GCTGTGGCACGCGTCTTTGGTAGTGATGATGCGGGCAAGGGAACGAGGGA
AGGAGGCTTGCGAGTGTTGGATTTATGTGCGGCGCCCGGAGGGAAGGGTT
TGGCAGTGTGGGATGTTATAAGGGAGGGCCAGGGGCACCATACCTTGGCG
CTGGTAATGAATGATGTGAATGAGGAGAAAACAGGGAGAATAAGGGAAAA
TTTGAGTAAGTTTGGGCTTGAGGATAAAATTCATTTGACGATTGGGGATG
GGTTGACCCTCACGAGGGAGGAGTTGGGGAGGCAGATGGGATCGAATATT
GAGGGAGAAGGGGGGAAGGAGGAGGGAGGATTTGATGTTGTTATTTTGGA
TGCGCCGTGCTCCAATGCGGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCT
GGCGGTTGCGTGATGAAGCATTGCTAAGAGAACTTGAGGAGACACAGTTT
TCGTTGTTGAAGCACGCGAGTGAAGAGCTTTTGTCGGGAACGAGCCCACG
GGGGGAAATATGGTATATGACGTGCTCAATTTTGAAGGGGGAGGATGAGG
GGATGGTGGAGCGGGCGTGTCGGGAGTTGGGATTGGAGGTGGTAGTTGAG
GGAGGGAAAGATCTGATGATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGG
GGCGTTTGATGGTGGGTTTGGATGTGCCTTGCGGAGAAGGAGCTGAAGCA
ATAATGAGACCGTAGAAATCAATTTTTGTAAACATATTCACACACAATTC
AGTGCGCAAGTCAAACAAAAGGGAAATTTCGG
back to top

protein sequence of NO05G03550.1

>NO05G03550.1-protein ID=NO05G03550.1-protein|Name=NO05G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=575bp
MKPRFISPTQAKNPREAAYLAALAADREQAFISDALSEWADAKEPSASEM
GLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQ
RVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKL
PPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEAL
AVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVL
PLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHT
PLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFG
SDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVN
EEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKE
EGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHAS
EELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMM
KVLPGEGQGGAFDGGFGCALRRRS*
back to top
Synonyms
Publications