NO05G03550.1, NO05G03550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03550.1
Unique NameNO05G03550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1829
Alignment locationchr5:928778..930759 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:928778..930759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03550.1 vs.
Match: EWM28049.1 (sun protein [Nannochloropsis gaditana])

HSP 1 Score: 637.9 bits (1644), Expect = 3.100e-179
Identity = 346/581 (59.55%), Postives = 432/581 (74.35%), Query Frame = 0 
Query:    3 PRFISPTQAKNPREAAYLAALAADREQAFISDALSEWADAKEPSASEMGLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQRVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKLPPDPTT-DRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEALAVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVLPLAGSDTREE-----EHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHTPLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFGSDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVNEEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKEEGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHASEELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEG---GKDLMMKVLPGEGQGGAFDGGFGCALRRRS 575
            PRFI P++A++PREAAYLA LAA+R+QAFI+D L++W+  K PS+SE+GLATL+ANVACREA SLD+AI  LA     GA++ +G +R  SV+LKGRQR VLRTALAQYKYCTR PLYAIV+ AVE AK+YGGG +F +FTNALLRKL PDPT+ D+      + +  + +  V    +GD    RPLPLP+G+SE+ALA RLSYPPFLV   ++EFGK+ A  IM+A N FPP M RSR  +A AP L     + +EE     E  SA   +P    + +S + K  K  W TV +LP ALH PLPLPYTLGVV S+ L + LTQ++GWY+TNGTPAGLLARLAQGA  RV  +D A + +R+  L+VLD+CAAPGGKGLAVWD++ +GQG   ++LVMNDVN  K  RI ENL++FGL  ++ LT+GDG +L+++++  Q  S +      E+ GFD+V+LD PCSNAGVLGRRPEARWRL+D   L+ELE TQFSLLKHA EELLS T+   EIWY+TCSIL GEDEGMVE+AC+ELGLEVVV+    G+ L MKVLPGEG  GAFDGGFGCALRR++
Sbjct:  113 PRFIPPSRARSPREAAYLAVLAAERDQAFIADYLADWSRRKRPSSSEIGLATLVANVACREAASLDFAIEALA-----GAEDVRGGRR--SVKLKGRQRAVLRTALAQYKYCTRMPLYAIVNDAVELAKEYGGGIAFASFTNALLRKLHPDPTSLDKKASEADNTRVHQGENFVHGGADGD---IRPLPLPEGNSEKALATRLSYPPFLVKALVQEFGKSHAISIMKASNIFPPVMARSRIPEAKAPKLSGEAIEDKEEKGMGTEVHSAVDLSPEMAASSLSDSLKRGKASWETVESLPMALHAPLPLPYTLGVVHSDVLLQLLTQNDGWYITNGTPAGLLARLAQGAAKRVL-ADSAAEESRDPVLQVLDVCAAPGGKGLAVWDIL-QGQGRR-VSLVMNDVNGAKKARIAENLARFGLSQEVQLTVGDGASLSKKDVANQTDSFVGSV--IEQNGFDIVVLDVPCSNAGVLGRRPEARWRLKDGVFLKELETTQFSLLKHAEEELLSKTNRHAEIWYLTCSILWGEDEGMVEKACKELGLEVVVDAENEGRPLRMKVLPGEGLKGAFDGGFGCALRRKA 678
The following BLAST results are available for this feature:
BLAST of NO05G03550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28049.13.100e-17959.55sun protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03550NO05G03550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03550.1NO05G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03550.1.cds1NO05G03550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03550.1.cds2NO05G03550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03550.1 ID=NO05G03550.1|Name=NO05G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
CCCGACGGTTCCCCCCGAATGAAACCCCGCTTTATATCTCCCACTCAAGC
CAAAAATCCCCGCGAAGCAGCGTACCTAGCGGCGCTGGCCGCTGATCGTG
AGCAAGCCTTTATTTCCGATGCTCTGTCTGAATGGGCCGACGCCAAAGAG
CCCTCGGCTTCCGAAATGGGGCTTGCGACCCTAATTGCCAATGTCGCCTG
TCGAGAGGCCAACAGCTTGGACTATGCCATTGGTGTCCTGGCGAAAGGAG
GAGGGGACGGAGCAAAGGAGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTG
AGGTTGAAGGGAAGGCAGCGGGTGGTCTTGCGGACAGCGTTGGCGCAGTA
CAAGTACTGCACGCGAACCCCTCTATATGCCATTGTCGATCACGCTGTCG
AGTGTGCCAAGCAATACGGCGGCGGTCCCTCTTTCGGCGCCTTCACCAAT
GCCCTTCTTCGCAAGCTTCCCCCTGATCCTACCACTGACCGCAACGATGG
GGCGCGCCAGCACCAGCAACAGCGAGAACAACAATATCTAGTCTTTTCTG
CGGAAGAAGGTGATGGAAGCGACACCCGCCCATTGCCCCTGCCCAAGGGG
CACTCGGAAGAGGCTCTCGCGGTTCGTCTCTCCTACCCGCCCTTCCTCGT
CCACCTCTTTATAGAAGAATTCGGGAAGGCCAAAGCCAAACTAATCATGG
AGGCGGGCAATACATTTCCACCTACCATGCTTCGTTCCCGTGCTGCTGAT
GCTGCGGCCCCAGTCCTGCCACTTGCTGGTTCCGATACAAGAGAGGAGGA
GCACGAAAGTGCTTCCGCCGCTGCTCCTGTAGCAGGGCCAGCGCCAATGA
GTGGTGCTTCAAAATCACTCAAACTTCCCTGGACAACAGTAAATAATCTC
CCTCCTGCCTTGCATACCCCGCTCCCACTCCCTTACACTCTTGGTGTCGT
CCGTTCGGAGAAATTGTTTCGGCAGCTGACGCAGGACGAAGGATGGTATG
TCACCAACGGGACACCTGCTGGATTGCTGGCGCGGTTGGCGCAAGGCGCT
GTGGCACGCGTCTTTGGTAGTGATGATGCGGGCAAGGGAACGAGGGAAGG
AGGCTTGCGAGTGTTGGATTTATGTGCGGCGCCCGGAGGGAAGGGTTTGG
CAGTGTGGGATGTTATAAGGGAGGGCCAGGGGCACCATACCTTGGCGCTG
GTAATGAATGATGTGAATGAGGAGAAAACAGGGAGAATAAGGGAAAATTT
GAGTAAGTTTGGGCTTGAGGATAAAATTCATTTGACGATTGGGGATGGGT
TGACCCTCACGAGGGAGGAGTTGGGGAGGCAGATGGGATCGAATATTGAG
GGAGAAGGGGGGAAGGAGGAGGGAGGATTTGATGTTGTTATTTTGGATGC
GCCGTGCTCCAATGCGGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCTGGC
GGTTGCGTGATGAAGCATTGCTAAGAGAACTTGAGGAGACACAGTTTTCG
TTGTTGAAGCACGCGAGTGAAGAGCTTTTGTCGGGAACGAGCCCACGGGG
GGAAATATGGTATATGACGTGCTCAATTTTGAAGGGGGAGGATGAGGGGA
TGGTGGAGCGGGCGTGTCGGGAGTTGGGATTGGAGGTGGTAGTTGAGGGA
GGGAAAGATCTGATGATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGGGGC
GTTTGATGGTGGGTTTGGATGTGCCTTGCGGAGAAGGAGCTGAAGCAATA
ATGAGACCGTAGAAATCAATTTTTGTAAACATATTCACACACAATTCAGT
GCGCAAGTCAAACAAAAGGGAAATTTCGG
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protein sequence of NO05G03550.1

>NO05G03550.1-protein ID=NO05G03550.1-protein|Name=NO05G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=575bp
MKPRFISPTQAKNPREAAYLAALAADREQAFISDALSEWADAKEPSASEM
GLATLIANVACREANSLDYAIGVLAKGGGDGAKEEKGKKREKSVRLKGRQ
RVVLRTALAQYKYCTRTPLYAIVDHAVECAKQYGGGPSFGAFTNALLRKL
PPDPTTDRNDGARQHQQQREQQYLVFSAEEGDGSDTRPLPLPKGHSEEAL
AVRLSYPPFLVHLFIEEFGKAKAKLIMEAGNTFPPTMLRSRAADAAAPVL
PLAGSDTREEEHESASAAAPVAGPAPMSGASKSLKLPWTTVNNLPPALHT
PLPLPYTLGVVRSEKLFRQLTQDEGWYVTNGTPAGLLARLAQGAVARVFG
SDDAGKGTREGGLRVLDLCAAPGGKGLAVWDVIREGQGHHTLALVMNDVN
EEKTGRIRENLSKFGLEDKIHLTIGDGLTLTREELGRQMGSNIEGEGGKE
EGGFDVVILDAPCSNAGVLGRRPEARWRLRDEALLRELEETQFSLLKHAS
EELLSGTSPRGEIWYMTCSILKGEDEGMVERACRELGLEVVVEGGKDLMM
KVLPGEGQGGAFDGGFGCALRRRS*
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mRNA from alignment at chr5:928778..930759+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03550.1 ID=NO05G03550.1|Name=NO05G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp|location=Sequence derived from alignment at chr5:928778..930759+ (Nannochloropsis oceanica)
CCCGACGGTTCCCCCCGAATGAAACCCCGCTTTATATCTCCCACTCAAGC
CAAAAATCCCCGCGAAGCAGCGTACCTAGCGGCGCTGGCCGCTGATCGTG
AGCAAGCCTTTATTTCCGATGCTCTGTCTGAATGGGCCGACGCCAAAGAG
CCCTCGGCTTCCGAAATGGGGCTTGCGACCCTAATTGCCAATGTCGCCTG
TCGAGAGGCCAACAGCTTGGACTATGCCATTGGTGTCCTGGCGAAAGGAG
GAGGGGACGGAGCAAAGGAGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTG
AGGTTGAAGGGAAGGCAGCGGGTGGTCTTGCGGACAGCGTTGGCGCAGTA
CAAGTGGGTTTAAGGGAAGGGAGGAAGGGAGGGTAGGAGAGGGCAAGGGA
GCGATACGGAAGGACCATGTTTCGATGTCGATCCAAGAGAGGATGCGTGA
CCTCTATATTGCGTAGCACCGACGACTCTCCCTCCCTTCCTCTCCCTCCA
CAAAAGGTACTGCACGCGAACCCCTCTATATGCCATTGTCGATCACGCTG
TCGAGTGTGCCAAGCAATACGGCGGCGGTCCCTCTTTCGGCGCCTTCACC
AATGCCCTTCTTCGCAAGCTTCCCCCTGATCCTACCACTGACCGCAACGA
TGGGGCGCGCCAGCACCAGCAACAGCGAGAACAACAATATCTAGTCTTTT
CTGCGGAAGAAGGTGATGGAAGCGACACCCGCCCATTGCCCCTGCCCAAG
GGGCACTCGGAAGAGGCTCTCGCGGTTCGTCTCTCCTACCCGCCCTTCCT
CGTCCACCTCTTTATAGAAGAATTCGGGAAGGCCAAAGCCAAACTAATCA
TGGAGGCGGGCAATACATTTCCACCTACCATGCTTCGTTCCCGTGCTGCT
GATGCTGCGGCCCCAGTCCTGCCACTTGCTGGTTCCGATACAAGAGAGGA
GGAGCACGAAAGTGCTTCCGCCGCTGCTCCTGTAGCAGGGCCAGCGCCAA
TGAGTGGTGCTTCAAAATCACTCAAACTTCCCTGGACAACAGTAAATAAT
CTCCCTCCTGCCTTGCATACCCCGCTCCCACTCCCTTACACTCTTGGTGT
CGTCCGTTCGGAGAAATTGTTTCGGCAGCTGACGCAGGACGAAGGATGGT
ATGTCACCAACGGGACACCTGCTGGATTGCTGGCGCGGTTGGCGCAAGGC
GCTGTGGCACGCGTCTTTGGTAGTGATGATGCGGGCAAGGGAACGAGGGA
AGGAGGCTTGCGAGTGTTGGATTTATGTGCGGCGCCCGGAGGGAAGGGTT
TGGCAGTGTGGGATGTTATAAGGGAGGGCCAGGGGCACCATACCTTGGCG
CTGGTAATGAATGATGTGAATGAGGAGAAAACAGGGAGAATAAGGGAAAA
TTTGAGTAAGTTTGGGCTTGAGGATAAAATTCATTTGACGATTGGGGATG
GGTTGACCCTCACGAGGGAGGAGTTGGGGAGGCAGATGGGATCGAATATT
GAGGGAGAAGGGGGGAAGGAGGAGGGAGGATTTGATGTTGTTATTTTGGA
TGCGCCGTGCTCCAATGCGGGGGTGTTGGGGAGGCGGCCAGAGGCTCGCT
GGCGGTTGCGTGATGAAGCATTGCTAAGAGAACTTGAGGAGACACAGTTT
TCGTTGTTGAAGCACGCGAGTGAAGAGCTTTTGTCGGGAACGAGCCCACG
GGGGGAAATATGGTATATGACGTGCTCAATTTTGAAGGGGGAGGATGAGG
GGATGGTGGAGCGGGCGTGTCGGGAGTTGGGATTGGAGGTGGTAGTTGAG
GGAGGGAAAGATCTGATGATGAAGGTTTTGCCGGGGGAGGGGCAAGGAGG
GGCGTTTGATGGTGGGTTTGGATGTGCCTTGCGGAGAAGGAGCTGAAGCA
ATAATGAGACCGTAGAAATCAATTTTTGTAAACATATTCACACACAATTC
AGTGCGCAAGTCAAACAAAAGGGAAATTTCGG
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Coding sequence (CDS) from alignment at chr5:928778..930759+

>NO05G03550.1 ID=NO05G03550.1|Name=NO05G03550.1|organism=Nannochloropsis oceanica|type=CDS|length=1725bp|location=Sequence derived from alignment at chr5:928778..930759+ (Nannochloropsis oceanica)
ATGAAACCCCGCTTTATATCTCCCACTCAAGCCAAAAATCCCCGCGAAGC
AGCGTACCTAGCGGCGCTGGCCGCTGATCGTGAGCAAGCCTTTATTTCCG
ATGCTCTGTCTGAATGGGCCGACGCCAAAGAGCCCTCGGCTTCCGAAATG
GGGCTTGCGACCCTAATTGCCAATGTCGCCTGTCGAGAGGCCAACAGCTT
GGACTATGCCATTGGTGTCCTGGCGAAAGGAGGAGGGGACGGAGCAAAGG
AGGAAAAGGGGAAGAAAAGGGAAAAGTCGGTGAGGTTGAAGGGAAGGCAG
CGGGTGGTCTTGCGGACAGCGTTGGCGCAGTACAAGTACTGCACGCGAAC
CCCTCTATATGCCATTGTCGATCACGCTGTCGAGTGTGCCAAGCAATACG
GCGGCGGTCCCTCTTTCGGCGCCTTCACCAATGCCCTTCTTCGCAAGCTT
CCCCCTGATCCTACCACTGACCGCAACGATGGGGCGCGCCAGCACCAGCA
ACAGCGAGAACAACAATATCTAGTCTTTTCTGCGGAAGAAGGTGATGGAA
GCGACACCCGCCCATTGCCCCTGCCCAAGGGGCACTCGGAAGAGGCTCTC
GCGGTTCGTCTCTCCTACCCGCCCTTCCTCGTCCACCTCTTTATAGAAGA
ATTCGGGAAGGCCAAAGCCAAACTAATCATGGAGGCGGGCAATACATTTC
CACCTACCATGCTTCGTTCCCGTGCTGCTGATGCTGCGGCCCCAGTCCTG
CCACTTGCTGGTTCCGATACAAGAGAGGAGGAGCACGAAAGTGCTTCCGC
CGCTGCTCCTGTAGCAGGGCCAGCGCCAATGAGTGGTGCTTCAAAATCAC
TCAAACTTCCCTGGACAACAGTAAATAATCTCCCTCCTGCCTTGCATACC
CCGCTCCCACTCCCTTACACTCTTGGTGTCGTCCGTTCGGAGAAATTGTT
TCGGCAGCTGACGCAGGACGAAGGATGGTATGTCACCAACGGGACACCTG
CTGGATTGCTGGCGCGGTTGGCGCAAGGCGCTGTGGCACGCGTCTTTGGT
AGTGATGATGCGGGCAAGGGAACGAGGGAAGGAGGCTTGCGAGTGTTGGA
TTTATGTGCGGCGCCCGGAGGGAAGGGTTTGGCAGTGTGGGATGTTATAA
GGGAGGGCCAGGGGCACCATACCTTGGCGCTGGTAATGAATGATGTGAAT
GAGGAGAAAACAGGGAGAATAAGGGAAAATTTGAGTAAGTTTGGGCTTGA
GGATAAAATTCATTTGACGATTGGGGATGGGTTGACCCTCACGAGGGAGG
AGTTGGGGAGGCAGATGGGATCGAATATTGAGGGAGAAGGGGGGAAGGAG
GAGGGAGGATTTGATGTTGTTATTTTGGATGCGCCGTGCTCCAATGCGGG
GGTGTTGGGGAGGCGGCCAGAGGCTCGCTGGCGGTTGCGTGATGAAGCAT
TGCTAAGAGAACTTGAGGAGACACAGTTTTCGTTGTTGAAGCACGCGAGT
GAAGAGCTTTTGTCGGGAACGAGCCCACGGGGGGAAATATGGTATATGAC
GTGCTCAATTTTGAAGGGGGAGGATGAGGGGATGGTGGAGCGGGCGTGTC
GGGAGTTGGGATTGGAGGTGGTAGTTGAGGGAGGGAAAGATCTGATGATG
AAGGTTTTGCCGGGGGAGGGGCAAGGAGGGGCGTTTGATGGTGGGTTTGG
ATGTGCCTTGCGGAGAAGGAGCTGA
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Synonyms
Publications