NO05G03530, NO05G03530 (gene) Nannochloropsis oceanica

Overview
NameNO05G03530
Unique NameNO05G03530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1540
Alignment locationchr5:925707..927246 -

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Properties
Property NameValue
DescriptionEnhancer of rudimentary homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:925707..927246 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045747positive regulation of Notch signaling pathway
GO:0006221pyrimidine nucleotide biosynthetic process
GO:0007049cell cycle
GO:0009058biosynthetic process
GO:0007165signal transduction
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR035912EHR_sf
IPR000781Enh_rudimentary
Homology
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: EWM28052.1 (enhancer of rudimentary [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 3.200e-50
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 0 
Query:    1 MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 106
            MASRHTILLVQPTR A+SRTFFDFPTVYEAMDEVVKMYEKQLKQLNP+IPHITYDI+HLLRFVDDL D+SALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR
Sbjct:    1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: OAE19517.1 (hypothetical protein AXG93_4794s1290 [Marchantia polymorpha subsp. ruderalis] >PTQ31355.1 hypothetical protein MARPO_0112s0015 [Marchantia polymorpha] >PTQ31356.1 hypothetical protein MARPO_0112s0015 [Marchantia polymorpha] >PTQ31357.1 hypothetical protein MARPO_0112s0015 [Marchantia polymorpha])

HSP 1 Score: 117.9 bits (294), Expect = 2.000e-23
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 0 
Query:    1 MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            MA RHTI+L+QP    A+RTF DF TV  AMD +  +YEK+LK+LNPT+ +ITYDI+ L +F+D L D+SALVFDP    Y P+ ++W+K + +++LK+ A
Sbjct:    1 MAQRHTIILMQPIMNRATRTFMDFETVSAAMDGICGIYEKKLKELNPTVHNITYDIADLYKFIDSLTDMSALVFDPSLNAYIPYDRQWIKQRAFQHLKKLA 101
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: GAY04811.1 (enhancer of rudimentary [Pythium insidiosum])

HSP 1 Score: 116.7 bits (291), Expect = 4.400e-23
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:    3 SRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 103
            ++HTI+LVQ TR   SRT+ DF +V  AMD VVKMYE  LKQLNP + +ITYDI  L  ++D L D+SALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    7 AKHTIILVQYTRDPNSRTYLDFESVNGAMDGVVKMYEATLKQLNPNLKNITYDIQDLYNYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 106
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_006186493.1 (PREDICTED: enhancer of rudimentary homolog [Camelus ferus])

HSP 1 Score: 115.9 bits (289), Expect = 7.500e-23
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 0 
Query:    5 HTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 106
            HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L+QQA   R
Sbjct:    3 HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRQQAQQAR 103
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_002613175.1 (hypothetical protein BRAFLDRAFT_210509 [Branchiostoma floridae] >EEN69184.1 hypothetical protein BRAFLDRAFT_210509, partial [Branchiostoma floridae])

HSP 1 Score: 115.9 bits (289), Expect = 7.500e-23
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:    5 HTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 106
            HTILLVQPT    SRT+ D+ TV E M+ V K++E+ LK++NPT P ITYDIS L  F+D LAD+S LVF   T  Y+PH K+W+K KIY  L++QA   R
Sbjct:    3 HTILLVQPTGRPESRTYSDYETVTECMEGVCKIFEEHLKRVNPTSPSITYDISQLFDFIDQLADLSCLVFQKSTNTYAPHDKDWIKEKIYILLRKQAEQAR 103
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_019636636.1 (PREDICTED: enhancer of rudimentary homolog [Branchiostoma belcheri])

HSP 1 Score: 115.9 bits (289), Expect = 7.500e-23
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:    5 HTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 106
            HTILLVQPT    SRT+ D+ TV E M+ V K++E+ LK++NPT P ITYDIS L  F+D LAD+S LVF   T  Y+PH K+W+K KIY  L++QA   R
Sbjct:    3 HTILLVQPTGRPESRTYSDYETVTECMEGVCKIFEEHLKRVNPTSPSITYDISQLFDFIDQLADLSCLVFQKSTNTYAPHDKDWIKEKIYILLRKQAEQAR 103
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: CCD28179.1 (enhancer of rudimentary, partial [Plasmopara viticola])

HSP 1 Score: 115.5 bits (288), Expect = 9.800e-23
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:    3 SRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 103
            ++HTI+LVQ TR   SRT+ DF +V   MD VVKMYE +LKQLNP + +ITYDI  L  ++D L D+SALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:   10 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 109
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_005305984.1 (enhancer of rudimentary homolog isoform X1 [Chrysemys picta bellii])

HSP 1 Score: 115.5 bits (288), Expect = 9.800e-23
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 0 
Query:    1 MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            M+  HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:   21 MSMSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 121
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: ETI42506.1 (hypothetical protein F443_12384 [Phytophthora parasitica P1569] >ETL89146.1 hypothetical protein L917_11872 [Phytophthora parasitica] >KUF83399.1 Enhancer of rudimentary [Phytophthora nicotianae])

HSP 1 Score: 115.5 bits (288), Expect = 9.800e-23
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:    3 SRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 103
            ++HTI+LVQ TR   SRT+ DF +V   MD VVKMYE +LKQLNP + +ITYDI  L  ++D L D+SALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    8 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 107
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_008908714.1 (hypothetical protein PPTG_13978 [Phytophthora parasitica INRA-310] >ETK82528.1 hypothetical protein L915_12106 [Phytophthora parasitica] >ETL35912.1 hypothetical protein L916_12031 [Phytophthora parasitica] >ETM42404.1 hypothetical protein L914_11942 [Phytophthora parasitica] >ETN06212.1 hypothetical protein PPTG_13978 [Phytophthora parasitica INRA-310] >ETO71120.1 hypothetical protein F444_12484 [Phytophthora parasitica P1976] >ETP12214.1 hypothetical protein F441_12370 [Phytophthora parasitica CJ01A1] >ETP40351.1 hypothetical protein F442_12305 [Phytophthora parasitica P10297])

HSP 1 Score: 115.5 bits (288), Expect = 9.800e-23
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:    3 SRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 103
            ++HTI+LVQ TR   SRT+ DF +V   MD VVKMYE +LKQLNP + +ITYDI  L  ++D L D+SALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    7 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 106
The following BLAST results are available for this feature:
BLAST of NO05G03530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28052.13.200e-5094.29enhancer of rudimentary [Nannochloropsis gaditana][more]
OAE19517.12.000e-2352.48hypothetical protein AXG93_4794s1290 [Marchantia p... [more]
GAY04811.14.400e-2357.00enhancer of rudimentary [Pythium insidiosum][more]
XP_006186493.17.500e-2354.46PREDICTED: enhancer of rudimentary homolog [Camelu... [more]
XP_002613175.17.500e-2355.45hypothetical protein BRAFLDRAFT_210509 [Branchiost... [more]
XP_019636636.17.500e-2355.45PREDICTED: enhancer of rudimentary homolog [Branch... [more]
CCD28179.19.800e-2356.00enhancer of rudimentary, partial [Plasmopara vitic... [more]
XP_005305984.19.800e-2353.47enhancer of rudimentary homolog isoform X1 [Chryse... [more]
ETI42506.19.800e-2356.00hypothetical protein F443_12384 [Phytophthora para... [more]
XP_008908714.19.800e-2356.00hypothetical protein PPTG_13978 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003510NSK003510Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03530.1NO05G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584772gene_3162Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g9gene2513Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03530.1NO05G03530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03530 ID=NO05G03530|Name=NO05G03530|organism=Nannochloropsis oceanica|type=gene|length=1540bp
GGACGGGGGACACGGGGGGGTGAGGAGGTCAGACATGATCAACATATTTC
TCTCAAACGCATCCGTTTGCCAGCTGTGTACACAGCCTTTACCAGCTCTA
CCAGCTCCACCGGTGATGATATAGGCGTCCTCGCACAGATTGACCCTCTG
CTTGCGTGCTTAAACGGTACGATTCGGAACTCTGGGGCCTCGCCGCAGCG
AAGAAAATGAACTTGCCTCCGCAACCCGACACTCACATACGCCACACATC
ACACATACACACAAATTTGCAGGGCAAATGGCTTCTCGGCACACCATCCT
CCTGGTCCAGCCTACGCGTGTGGCGGCGTCCCGCACGTTCTTCGACTTCC
CCACGGTCTATGAGGCCATGGACGgtacgtaaagatagaaggcagcccct
ccccgtcctttctcccgtgcttccagtcccgtggtgcttgtgtgtatgct
cttccatgccttcgtgtaaggaatgaattttgctgcttcggatgtgcttg
ctttgctcggagttgcgacttcgtcggcaccatgagacccgccgagacag
agcagctccccgagcctagcttcccttctcttgcacttacttccaaaccc
acgttacctcctgagtaagagataattaaaacctgcctcctcgcttccat
tctattttggcaccaaaaaacacagAGGTAGTGAAGATGTACGAGAAACA
GCTCAAGCAACTAAACCCTACCATCCCGCATATAACCTATGACATCTCGg
tacgtcgttcttatggggtggtttgaaggcttggtcggacatgaatgtgt
gtatgcttcgtgcgttgacatcagcaatgaaatattaatatgagttcata
gatacgtatcgcaggggagaacattcctcactccattaatctaacgtctt
gtgtggtggtttgaagacatgtccagccacattaatcaaatgtttacaag
tgatgcgttgtgacacgaaaaggagaattgataaaacgttaaaaaaaaag
cttcaaactacgtatagcccgtggcttcggctccaagagcactgatcccc
catattctccacacctcatactctcgtcatgacagCACTTGCTGCGGTTC
GTGGATGACCTCGCCGACATCTCCGCCCTCGTgtaagtaccgaaaaaccc
gcttcatgtccagacctaaacagacatggatgtagtacactcctatatcg
gcacctataggcttattcttcttaccccctccctccctcagCTTTGATCC
CCGCACGAAGCAATACTCGCCGCACTCCAAAGAGTGGGTCAAGAGCAAGA
TCTACGAGAATTTGAAGCAGCAAGCCGGTGGGGGACGCTAGATGACGGAA
TGAAGGGAGGAAAGGAGGGACTGAGGGATTGTGAAGGATGGAGGAAGGGA
TGAGAATGAGCAGTGGATGAGGGGCGTGAGGTCAGGCGCCACGTTGGTCA
AGAGAGGGGGCATTAGATCGAAGAAATAGAAAGACAAGAAGAAGTAACAA
AAGATGAAGATGAATACGCTATATGCGGGTATCTGTATCT
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protein sequence of NO05G03530.1

>NO05G03530.1-protein ID=NO05G03530.1-protein|Name=NO05G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIP
HITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQ
AGGGR*
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Synonyms
Publications