NO05G03530.1, NO05G03530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03530.1
Unique NameNO05G03530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length794
Alignment locationchr5:925707..927246 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:925707..927246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03530.1 vs.
Match: EWM28052.1 (enhancer of rudimentary [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 3.200e-50
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 0 
Query:    1 MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 106
            MASRHTILLVQPTR A+SRTFFDFPTVYEAMDEVVKMYEKQLKQLNP+IPHITYDI+HLLRFVDDL D+SALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR
Sbjct:    1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
The following BLAST results are available for this feature:
BLAST of NO05G03530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28052.13.200e-5094.29enhancer of rudimentary [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03530NO05G03530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03530.1NO05G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03530.1.cds1NO05G03530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03530.1.cds2NO05G03530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03530.1.cds3NO05G03530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03530.1.cds4NO05G03530.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03530.1 ID=NO05G03530.1|Name=NO05G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=794bp
GGACGGGGGACACGGGGGGGTGAGGAGGTCAGACATGATCAACATATTTC
TCTCAAACGCATCCGTTTGCCAGCTGTGTACACAGCCTTTACCAGCTCTA
CCAGCTCCACCGGTGATGATATAGGCGTCCTCGCACAGATTGACCCTCTG
CTTGCGTGCTTAAACGGTACGATTCGGAACTCTGGGGCCTCGCCGCAGCG
AAGAAAATGAACTTGCCTCCGCAACCCGACACTCACATACGCCACACATC
ACACATACACACAAATTTGCAGGGCAAATGGCTTCTCGGCACACCATCCT
CCTGGTCCAGCCTACGCGTGTGGCGGCGTCCCGCACGTTCTTCGACTTCC
CCACGGTCTATGAGGCCATGGACGAGGTAGTGAAGATGTACGAGAAACAG
CTCAAGCAACTAAACCCTACCATCCCGCATATAACCTATGACATCTCGCA
CTTGCTGCGGTTCGTGGATGACCTCGCCGACATCTCCGCCCTCGTCTTTG
ATCCCCGCACGAAGCAATACTCGCCGCACTCCAAAGAGTGGGTCAAGAGC
AAGATCTACGAGAATTTGAAGCAGCAAGCCGGTGGGGGACGCTAGATGAC
GGAATGAAGGGAGGAAAGGAGGGACTGAGGGATTGTGAAGGATGGAGGAA
GGGATGAGAATGAGCAGTGGATGAGGGGCGTGAGGTCAGGCGCCACGTTG
GTCAAGAGAGGGGGCATTAGATCGAAGAAATAGAAAGACAAGAAGAAGTA
ACAAAAGATGAAGATGAATACGCTATATGCGGGTATCTGTATCT
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protein sequence of NO05G03530.1

>NO05G03530.1-protein ID=NO05G03530.1-protein|Name=NO05G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIP
HITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQ
AGGGR*
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mRNA from alignment at chr5:925707..927246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03530.1 ID=NO05G03530.1|Name=NO05G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at chr5:925707..927246- (Nannochloropsis oceanica)
GGACGGGGGACACGGGGGGGTGAGGAGGTCAGACATGATCAACATATTTC
TCTCAAACGCATCCGTTTGCCAGCTGTGTACACAGCCTTTACCAGCTCTA
CCAGCTCCACCGGTGATGATATAGGCGTCCTCGCACAGATTGACCCTCTG
CTTGCGTGCTTAAACGGTACGATTCGGAACTCTGGGGCCTCGCCGCAGCG
AAGAAAATGAACTTGCCTCCGCAACCCGACACTCACATACGCCACACATC
ACACATACACACAAATTTGCAGGGCAAATGGCTTCTCGGCACACCATCCT
CCTGGTCCAGCCTACGCGTGTGGCGGCGTCCCGCACGTTCTTCGACTTCC
CCACGGTCTATGAGGCCATGGACGGTACGTAAAGATAGAAGGCAGCCCCT
CCCCGTCCTTTCTCCCGTGCTTCCAGTCCCGTGGTGCTTGTGTGTATGCT
CTTCCATGCCTTCGTGTAAGGAATGAATTTTGCTGCTTCGGATGTGCTTG
CTTTGCTCGGAGTTGCGACTTCGTCGGCACCATGAGACCCGCCGAGACAG
AGCAGCTCCCCGAGCCTAGCTTCCCTTCTCTTGCACTTACTTCCAAACCC
ACGTTACCTCCTGAGTAAGAGATAATTAAAACCTGCCTCCTCGCTTCCAT
TCTATTTTGGCACCAAAAAACACAGAGGTAGTGAAGATGTACGAGAAACA
GCTCAAGCAACTAAACCCTACCATCCCGCATATAACCTATGACATCTCGG
TACGTCGTTCTTATGGGGTGGTTTGAAGGCTTGGTCGGACATGAATGTGT
GTATGCTTCGTGCGTTGACATCAGCAATGAAATATTAATATGAGTTCATA
GATACGTATCGCAGGGGAGAACATTCCTCACTCCATTAATCTAACGTCTT
GTGTGGTGGTTTGAAGACATGTCCAGCCACATTAATCAAATGTTTACAAG
TGATGCGTTGTGACACGAAAAGGAGAATTGATAAAACGTTAAAAAAAAAG
CTTCAAACTACGTATAGCCCGTGGCTTCGGCTCCAAGAGCACTGATCCCC
CATATTCTCCACACCTCATACTCTCGTCATGACAGCACTTGCTGCGGTTC
GTGGATGACCTCGCCGACATCTCCGCCCTCGTGTAAGTACCGAAAAACCC
GCTTCATGTCCAGACCTAAACAGACATGGATGTAGTACACTCCTATATCG
GCACCTATAGGCTTATTCTTCTTACCCCCTCCCTCCCTCAGCTTTGATCC
CCGCACGAAGCAATACTCGCCGCACTCCAAAGAGTGGGTCAAGAGCAAGA
TCTACGAGAATTTGAAGCAGCAAGCCGGTGGGGGACGCTAGATGACGGAA
TGAAGGGAGGAAAGGAGGGACTGAGGGATTGTGAAGGATGGAGGAAGGGA
TGAGAATGAGCAGTGGATGAGGGGCGTGAGGTCAGGCGCCACGTTGGTCA
AGAGAGGGGGCATTAGATCGAAGAAATAGAAAGACAAGAAGAAGTAACAA
AAGATGAAGATGAATACGCTATATGCGGGTATCTGTATCT
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Coding sequence (CDS) from alignment at chr5:925707..927246-

>NO05G03530.1 ID=NO05G03530.1|Name=NO05G03530.1|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at chr5:925707..927246- (Nannochloropsis oceanica)
ATGGCTTCTCGGCACACCATCCTCCTGGTCCAGCCTACGCGTGTGGCGGC
GTCCCGCACGTTCTTCGACTTCCCCACGGTCTATGAGGCCATGGACGAGG
TAGTGAAGATGTACGAGAAACAGCTCAAGCAACTAAACCCTACCATCCCG
CATATAACCTATGACATCTCGCACTTGCTGCGGTTCGTGGATGACCTCGC
CGACATCTCCGCCCTCGTCTTTGATCCCCGCACGAAGCAATACTCGCCGC
ACTCCAAAGAGTGGGTCAAGAGCAAGATCTACGAGAATTTGAAGCAGCAA
GCCGGTGGGGGACGCTAG
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Synonyms
Publications